Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 125.96038 * 2 1 4 4 C 1.33245 * 109.82877 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52476 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47003 * 90.00407 * 5 4 3 7 7 O 1.21283 * 119.99917 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00170 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.63162 * 0.02562 * 8 6 5 10 10 C 1.53194 * 108.77810 * 126.41044 * 9 8 6 11 11 C 1.53039 * 109.31296 * 54.63472 * 10 9 8 12 12 H 1.09002 * 109.46304 * 58.65534 * 11 10 9 13 13 C 1.52998 * 109.45211 * 178.62445 * 11 10 9 14 14 C 1.53048 * 109.53789 * 298.63567 * 11 10 9 15 15 H 1.08992 * 109.50009 * 301.38170 * 14 11 10 16 16 C 1.53000 * 109.49591 * 181.31348 * 14 11 10 17 17 N 1.46499 * 109.46840 * 174.99920 * 16 14 11 18 18 C 1.36936 * 120.00002 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00140 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00367 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00444 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46864 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47259 * 119.99588 * 22 20 18 25 25 H 1.48495 * 109.47205 * 239.99955 * 22 20 18 26 26 C 1.46924 * 120.63090 * 180.02562 * 8 6 5 27 27 N 1.30704 * 108.94746 * 0.26466 * 4 3 2 28 28 N 1.34435 * 125.96320 * 179.97438 * 2 1 3 29 29 H 0.97001 * 126.82297 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.46686 * 90.02529 * 1 2 3 31 31 H 1.08999 * 109.46800 * 210.02367 * 1 2 3 32 32 H 1.08994 * 109.47025 * 330.02607 * 1 2 3 33 33 H 1.08996 * 109.47505 * 330.00585 * 5 4 3 34 34 H 1.09000 * 109.47115 * 210.00149 * 5 4 3 35 35 H 1.08996 * 109.58425 * 6.62062 * 9 8 6 36 36 H 1.09003 * 109.58651 * 246.19576 * 9 8 6 37 37 H 1.09004 * 109.49424 * 294.68550 * 10 9 8 38 38 H 1.09000 * 109.50014 * 174.58892 * 10 9 8 39 39 H 1.08991 * 109.47291 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46726 * 300.06023 * 13 11 10 41 41 H 1.09003 * 109.47085 * 60.05635 * 13 11 10 42 42 H 1.09002 * 109.47398 * 295.00246 * 16 14 11 43 43 H 1.09001 * 109.47194 * 55.00427 * 16 14 11 44 44 H 0.97000 * 120.00420 * 0.02562 * 17 16 14 45 45 H 0.96996 * 120.00586 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.58890 * 113.80483 * 26 8 6 47 47 H 1.08995 * 109.59190 * 353.37934 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1309 1.9362 1.4209 7 8 4.5123 1.4482 2.3429 8 7 6.1704 2.7579 1.6669 9 6 6.9291 3.3572 0.5606 10 6 6.9684 4.8762 0.7554 11 6 7.5260 5.1941 2.1446 12 1 8.5247 4.7682 2.2413 13 6 7.5987 6.7111 2.3296 14 6 6.6100 4.5935 3.2136 15 1 5.6052 5.0009 3.1023 16 6 7.1505 4.9397 4.6024 17 7 6.2116 4.4681 5.6233 18 6 6.4856 4.6677 6.9500 19 1 7.3937 5.1732 7.2438 20 6 5.5963 4.2204 7.9174 21 7 4.4894 3.6049 7.5595 22 14 5.9697 4.4934 9.7273 23 1 7.2664 5.2043 9.8634 24 1 4.8904 5.3104 10.3377 25 1 6.0496 3.1821 10.4194 26 6 6.5665 3.0716 3.0466 27 7 3.6195 -0.6167 -0.0048 28 7 2.2965 -1.0881 0.0005 29 1 2.0094 -2.0147 0.0006 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4702 2.5468 -0.5142 34 1 5.5744 1.1507 -0.5131 35 1 6.4419 3.1226 -0.3858 36 1 7.9452 2.9627 0.5585 37 1 5.9599 5.2805 0.6669 38 1 7.6084 5.3241 -0.0048 39 1 7.9963 6.9379 3.3188 40 1 8.2511 7.1390 1.5684 41 1 6.6000 7.1371 2.2334 42 1 8.1171 4.4570 4.7469 43 1 7.2676 6.0201 4.6878 44 1 5.3959 4.0144 5.3595 45 1 3.8677 3.2926 8.2354 46 1 7.5530 2.6538 3.2475 47 1 5.8401 2.6487 3.7405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132830740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = 22.440186 kcal Electronic energy + Delta-G solvation = -27448.522145 eV Core-core repulsion = 23666.704955 eV Total energy + Delta-G solvation = -3781.817190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19790 -41.30840 -39.19113 -36.61909 -35.11910 -34.68995 -33.50862 -33.38163 -31.77889 -30.86976 -29.17249 -28.60005 -27.12608 -25.02241 -24.40044 -22.75029 -22.55563 -21.90576 -20.99628 -19.91769 -19.15499 -18.89890 -18.24623 -17.12071 -16.75619 -16.57342 -16.50106 -15.64339 -15.53117 -15.38981 -15.23147 -14.99703 -14.61075 -14.45054 -14.22135 -14.07087 -14.02274 -13.66440 -13.62863 -13.15557 -13.05460 -13.04303 -12.79220 -12.76901 -12.61101 -12.56818 -12.13215 -11.96430 -11.90588 -11.75194 -11.34800 -11.24388 -11.14172 -11.12610 -10.97598 -10.80713 -10.45091 -9.63345 -9.00792 -7.95501 -5.26063 0.53155 1.43405 1.45943 1.56027 1.56228 1.60271 1.71644 2.16754 2.54295 2.98017 3.37492 3.48143 3.56920 3.73922 3.83331 3.86639 3.91558 4.10656 4.22410 4.30163 4.34346 4.36061 4.45585 4.61566 4.64090 4.68392 4.72640 4.78199 4.83087 4.88256 4.98534 5.00340 5.03384 5.12227 5.17204 5.20971 5.27390 5.29494 5.35027 5.46834 5.49178 5.57691 5.62530 6.18485 6.25002 6.41780 7.04238 7.15527 7.30005 8.07402 8.29301 9.28394 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003460 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.878729 B = 8089.944845 C =10204.508151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.570 5.570 4 C 0.234 3.766 5 C -0.037 4.037 6 C 0.510 3.490 7 O -0.591 6.591 8 N -0.605 5.605 9 C 0.096 3.904 10 C -0.123 4.123 11 C -0.079 4.079 12 H 0.085 0.915 13 C -0.145 4.145 14 C -0.087 4.087 15 H 0.048 0.952 16 C 0.156 3.844 17 N -0.749 5.749 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.977 3.023 23 H -0.261 1.261 24 H -0.292 1.292 25 H -0.295 1.295 26 C 0.129 3.871 27 N -0.337 5.337 28 N -0.475 5.475 29 H 0.455 0.545 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.369 0.631 45 H 0.249 0.751 46 H 0.070 0.930 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -3.442 -26.400 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.301 5.301 4 C -0.050 4.050 5 C -0.079 4.079 6 C 0.298 3.702 7 O -0.471 6.471 8 N -0.337 5.337 9 C -0.025 4.025 10 C -0.161 4.161 11 C -0.098 4.098 12 H 0.103 0.897 13 C -0.202 4.202 14 C -0.107 4.107 15 H 0.066 0.934 16 C 0.030 3.970 17 N -0.392 5.392 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.625 5.625 22 Si 0.806 3.194 23 H -0.185 1.185 24 H -0.220 1.220 25 H -0.222 1.222 26 C 0.006 3.994 27 N -0.167 5.167 28 N -0.195 5.195 29 H 0.303 0.697 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.200 0.800 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.907 -3.655 -25.814 26.087 hybrid contribution -0.887 -0.908 1.769 2.177 sum 0.021 -4.563 -24.044 24.473 Atomic orbital electron populations 1.20643 0.80139 1.06171 1.06354 1.25246 0.98347 0.82072 0.93708 1.70295 1.01810 1.31395 1.26558 1.23748 0.93526 0.90190 0.97515 1.20060 0.94081 0.99855 0.93887 1.20943 0.79390 0.78262 0.91563 1.90768 1.54322 1.53688 1.48329 1.48204 1.31273 1.46383 1.07855 1.22258 0.97652 0.93587 0.88972 1.21999 1.02419 0.95075 0.96625 1.21101 0.98587 0.96356 0.93734 0.89711 1.21855 1.01788 0.94532 1.02068 1.21556 0.99637 0.94148 0.95354 0.93383 1.20941 0.92150 0.96940 0.86989 1.42716 1.24016 1.70031 1.02396 1.19726 1.03797 1.29799 0.84170 0.90183 1.25681 0.97098 1.01834 1.02722 1.69892 1.13008 1.46217 1.33398 0.85011 0.77728 0.76890 0.79772 1.18456 1.21950 1.22230 1.21343 0.99715 0.95682 0.82709 1.77817 0.98820 1.12484 1.27577 1.47849 1.03288 1.10955 1.57455 0.69658 0.86292 0.87261 0.88890 0.83308 0.83186 0.86347 0.88895 0.92160 0.86686 0.93429 0.90036 0.93651 0.95905 0.94790 0.79998 0.94205 0.91139 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.28 6.42 8.24 138.22 1.14 7.56 16 3 N -0.57 -17.18 11.19 -179.73 -2.01 -19.19 16 4 C 0.23 7.00 6.63 138.63 0.92 7.92 16 5 C -0.04 -0.86 4.67 29.10 0.14 -0.72 16 6 C 0.51 17.09 7.69 87.66 0.67 17.77 16 7 O -0.59 -27.92 15.45 -3.04 -0.05 -27.97 16 8 N -0.60 -17.19 2.97 -818.96 -2.43 -19.62 16 9 C 0.10 1.49 6.34 86.36 0.55 2.04 16 10 C -0.12 -1.92 5.36 30.67 0.16 -1.75 16 11 C -0.08 -1.75 2.23 -10.77 -0.02 -1.78 16 12 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 13 C -0.15 -3.08 8.82 71.98 0.63 -2.45 16 14 C -0.09 -2.97 1.92 -10.72 -0.02 -2.99 16 15 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.16 6.52 5.41 86.38 0.47 6.99 16 17 N -0.75 -41.40 5.38 -343.45 -1.85 -43.25 16 18 C -0.24 -14.44 9.99 84.03 0.84 -13.60 16 19 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 20 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 21 N -0.97 -64.94 13.06 21.65 0.28 -64.65 16 22 Si 0.98 48.78 29.55 68.60 2.03 50.81 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 25 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 26 C 0.13 4.70 5.52 86.35 0.48 5.18 16 27 N -0.34 -9.98 12.80 -51.34 -0.66 -10.64 16 28 N -0.48 -10.45 7.45 -50.70 -0.38 -10.83 16 29 H 0.45 6.08 8.96 -213.09 -1.91 4.17 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.15 2.49 7.69 -2.39 -0.02 2.48 16 34 H 0.15 2.30 7.94 -2.39 -0.02 2.28 16 35 H 0.12 1.03 5.93 -2.39 -0.01 1.02 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.17 6.29 -2.39 -0.02 1.15 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.03 1.39 6.14 -2.39 -0.01 1.38 16 44 H 0.37 22.55 6.90 -92.71 -0.64 21.91 16 45 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.04 2.16 6.21 -2.39 -0.01 2.14 16 Total: -1.00 -94.43 377.91 0.55 -93.88 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -1.55 Total: 31.92 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 7.17 Total: 19.54 kcal Atomic # 7 Polarization: -161.13 SS G_CDS: -7.04 Total: -168.18 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -94.43 0.55 -93.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132830740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.321 kcal (2) G-P(sol) polarization free energy of solvation -94.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds