Wall clock time and date at job start Fri Apr 10 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47057 * 2 1 4 4 C 1.34821 * 126.58812 * 125.24752 * 3 2 1 5 5 C 1.36601 * 106.83266 * 180.13026 * 4 3 2 6 6 C 1.47524 * 125.76628 * 179.89680 * 5 4 3 7 7 O 1.21597 * 120.00224 * 352.66973 * 6 5 4 8 8 N 1.34771 * 119.99980 * 172.66806 * 6 5 4 9 9 C 1.46926 * 120.63369 * 352.71478 * 8 6 5 10 10 C 1.53190 * 108.77954 * 233.58905 * 9 8 6 11 11 C 1.53042 * 109.31087 * 305.35950 * 10 9 8 12 12 H 1.08999 * 109.46067 * 181.38175 * 11 10 9 13 13 C 1.53002 * 109.46073 * 301.36199 * 11 10 9 14 14 C 1.53046 * 109.53433 * 61.36434 * 11 10 9 15 15 H 1.09005 * 109.49633 * 58.58618 * 14 11 10 16 16 C 1.53001 * 109.49602 * 178.67854 * 14 11 10 17 17 N 1.46495 * 109.47414 * 184.83863 * 16 14 11 18 18 C 1.36938 * 120.00468 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99688 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00228 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99789 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47514 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47074 * 120.00109 * 22 20 18 25 25 H 1.48497 * 109.46911 * 239.99493 * 22 20 18 26 26 C 1.46935 * 120.63263 * 172.69027 * 8 6 5 27 27 N 1.34392 * 108.46350 * 359.63540 * 5 4 3 28 28 N 1.28762 * 109.52484 * 0.22533 * 27 5 4 29 29 H 1.08995 * 109.47040 * 59.99520 * 1 2 3 30 30 H 1.08999 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46805 * 299.99545 * 1 2 3 32 32 H 1.09003 * 109.47129 * 240.00074 * 2 1 3 33 33 H 1.09002 * 109.47304 * 120.00748 * 2 1 3 34 34 H 1.07994 * 126.58607 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.58241 * 353.37630 * 9 8 6 36 36 H 1.09003 * 109.58584 * 113.65394 * 9 8 6 37 37 H 1.09000 * 109.49739 * 65.31154 * 10 9 8 38 38 H 1.08994 * 109.49691 * 185.41269 * 10 9 8 39 39 H 1.08997 * 109.47521 * 59.99871 * 13 11 10 40 40 H 1.09005 * 109.46623 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46795 * 299.99523 * 13 11 10 42 42 H 1.08993 * 109.47388 * 304.84594 * 16 14 11 43 43 H 1.09004 * 109.46975 * 64.84508 * 16 14 11 44 44 H 0.97004 * 119.99614 * 0.02562 * 17 16 14 45 45 H 0.97006 * 119.99626 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.58676 * 246.19975 * 26 8 6 47 47 H 1.08999 * 109.58034 * 6.63141 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8752 1.9306 0.8841 5 6 3.0502 3.2323 0.5087 6 6 3.9075 4.2191 1.1926 7 8 4.4295 3.9387 2.2544 8 7 4.1121 5.4314 0.6405 9 6 3.6222 5.7304 -0.7120 10 6 4.7898 6.2521 -1.5554 11 6 5.4360 7.4429 -0.8435 12 1 6.2517 7.8314 -1.4532 13 6 4.3900 8.5394 -0.6325 14 6 5.9830 6.9927 0.5131 15 1 6.7102 6.1942 0.3653 16 6 6.6578 8.1761 1.2097 17 7 7.2815 7.7194 2.4541 18 6 7.9487 8.6096 3.2526 19 1 8.0156 9.6483 2.9646 20 6 8.5401 8.1767 4.4314 21 7 8.4591 6.9106 4.7820 22 14 9.4497 9.3912 5.5208 23 1 9.3961 10.7426 4.9078 24 1 8.8106 9.4293 6.8607 25 1 10.8660 8.9670 5.6599 26 6 4.8289 6.4795 1.3799 27 7 2.3140 3.4605 -0.5922 28 7 1.6886 2.3844 -0.9224 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 3.3332 1.4371 1.7285 35 1 3.2215 4.8232 -1.1643 36 1 2.8403 6.4880 -0.6583 37 1 5.5282 5.4605 -1.6836 38 1 4.4212 6.5680 -2.5312 39 1 3.5740 8.1509 -0.0232 40 1 4.8502 9.3878 -0.1259 41 1 4.0009 8.8610 -1.5986 42 1 7.4202 8.5970 0.5543 43 1 5.9119 8.9382 1.4356 44 1 7.2217 6.7863 2.7125 45 1 8.8727 6.6080 5.6057 46 1 4.1473 7.2999 1.6039 47 1 5.2245 6.0664 2.3078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133204219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:43 Heat of formation + Delta-G solvation = 80.861003 kcal Electronic energy + Delta-G solvation = -27701.149045 eV Core-core repulsion = 23921.865172 eV Total energy + Delta-G solvation = -3779.283873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44562 -39.98797 -37.86475 -35.82591 -34.78720 -33.39320 -31.78929 -31.60911 -30.66769 -29.59264 -27.51948 -25.82307 -24.99934 -24.70402 -23.08805 -22.80212 -22.00257 -21.03835 -19.94829 -18.39604 -17.43270 -16.96672 -16.57452 -16.31171 -15.94271 -15.08349 -14.97452 -14.86220 -14.79200 -14.61370 -14.09216 -13.65622 -13.45008 -13.38204 -13.07371 -12.87044 -12.85311 -12.68527 -12.42301 -12.34387 -12.20963 -11.78762 -11.55650 -11.14264 -11.05926 -10.90227 -10.76608 -10.72965 -10.62156 -10.35873 -10.14197 -10.05435 -9.91631 -9.64104 -9.49185 -9.42656 -8.77990 -8.28194 -6.80621 -5.65183 -2.94284 0.94124 1.60705 1.75108 3.12947 3.36466 3.49966 3.54986 3.57654 3.92063 4.04220 4.30141 4.48365 4.57374 4.66896 4.77464 4.93583 4.95075 5.01649 5.07728 5.08180 5.21809 5.32062 5.42149 5.51135 5.55118 5.66517 5.71604 5.78411 5.83477 5.95528 6.06063 6.09040 6.12304 6.15489 6.21114 6.28652 6.46498 6.47851 6.50951 6.69278 6.82118 6.89119 7.01037 7.57178 7.77835 7.79720 8.33304 8.52828 9.63765 10.22890 10.57230 11.57257 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002987 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.169982 B = 9372.553511 C =10748.145109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.361 5.361 4 C 0.092 3.908 5 C -0.091 4.091 6 C 0.596 3.404 7 O -0.529 6.529 8 N -0.593 5.593 9 C 0.085 3.915 10 C -0.127 4.127 11 C -0.085 4.085 12 H 0.071 0.929 13 C -0.152 4.152 14 C -0.101 4.101 15 H 0.073 0.927 16 C 0.160 3.840 17 N -0.733 5.733 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.120 3.880 27 N -0.205 5.205 28 N -0.070 5.070 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.070 0.930 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.078 -13.568 -14.667 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.147 5.147 4 C -0.065 4.065 5 C -0.230 4.230 6 C 0.381 3.619 7 O -0.405 6.405 8 N -0.325 5.325 9 C -0.039 4.039 10 C -0.165 4.165 11 C -0.105 4.105 12 H 0.090 0.910 13 C -0.209 4.209 14 C -0.121 4.121 15 H 0.091 0.909 16 C 0.032 3.968 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.001 4.001 27 N -0.078 5.078 28 N -0.050 5.050 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.222 0.778 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.570 -13.279 -15.274 26.802 hybrid contribution 1.090 -0.033 1.557 1.901 sum -16.480 -13.312 -13.717 25.238 Atomic orbital electron populations 1.22086 0.92742 1.03669 1.04063 1.22042 0.96864 0.76238 1.05173 1.50562 1.31629 1.12263 1.20222 1.23427 0.92965 0.94087 0.95971 1.21586 1.07359 0.95158 0.98908 1.16847 0.79918 0.80916 0.84238 1.90879 1.49844 1.77596 1.22173 1.47919 1.55641 1.12021 1.16901 1.22479 0.95990 1.03727 0.81686 1.21940 0.98031 0.98145 0.98434 1.21088 0.97978 0.95164 0.96226 0.91039 1.21981 0.99041 0.98736 1.01158 1.21674 0.96775 0.99327 0.94281 0.90851 1.20685 0.94308 0.93330 0.88432 1.42441 1.64408 1.09693 1.21251 1.19252 1.25869 0.91241 1.00579 0.91221 1.24751 1.01676 0.96139 0.98512 1.69695 1.49523 1.13633 1.24963 0.86143 0.79333 0.80199 0.80680 1.20636 1.21939 1.21988 1.21797 0.93180 0.89051 0.96091 1.74418 1.05422 1.17590 1.10395 1.81944 1.20246 0.90618 1.12183 0.90730 0.89900 0.91649 0.88348 0.87612 0.77785 0.86077 0.91459 0.91899 0.91005 0.92388 0.91916 0.93202 0.96198 0.95909 0.78084 0.93620 0.91216 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.12 37.16 0.38 -0.27 16 2 C 0.12 0.48 7.26 -4.04 -0.03 0.45 16 3 N -0.36 -3.15 3.69 -61.06 -0.23 -3.37 16 4 C 0.09 0.94 11.28 -16.83 -0.19 0.75 16 5 C -0.09 -1.23 6.69 -83.55 -0.56 -1.79 16 6 C 0.60 9.96 7.67 -12.48 -0.10 9.86 16 7 O -0.53 -10.67 16.30 5.28 0.09 -10.58 16 8 N -0.59 -9.38 2.97 -173.99 -0.52 -9.90 16 9 C 0.08 1.09 5.61 -3.71 -0.02 1.07 16 10 C -0.13 -1.54 5.63 -26.61 -0.15 -1.69 16 11 C -0.09 -1.16 2.71 -90.57 -0.25 -1.41 16 12 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.15 -1.90 8.11 37.16 0.30 -1.60 16 14 C -0.10 -1.75 2.15 -90.50 -0.19 -1.94 16 15 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.16 3.32 5.19 -4.04 -0.02 3.30 16 17 N -0.73 -19.28 5.38 -59.91 -0.32 -19.60 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.03 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 22 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 C 0.12 2.14 5.06 -3.71 -0.02 2.12 16 27 N -0.21 -2.68 8.79 32.85 0.29 -2.39 16 28 N -0.07 -0.82 13.65 60.35 0.82 0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 0.18 8.08 -51.93 -0.42 -0.24 16 34 H 0.21 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 1.56 4.12 -77.89 -0.32 1.24 16 36 H 0.07 0.82 6.70 -51.93 -0.35 0.48 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.74 4.98 -51.93 -0.26 0.48 16 40 H 0.06 0.84 6.57 -51.93 -0.34 0.49 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.47 6.72 -51.93 -0.35 0.12 16 44 H 0.38 10.83 6.89 -40.82 -0.28 10.55 16 45 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 47 H 0.10 2.23 6.20 -51.93 -0.32 1.91 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -35.60 370.26 -6.86 -42.46 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.19 Total: 6.95 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.09 Total: 1.30 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.77 Total: -63.76 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.60 -6.86 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.324 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds