Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47057 * 2 1 4 4 C 1.34821 * 126.58812 * 125.24752 * 3 2 1 5 5 C 1.36601 * 106.83266 * 180.13026 * 4 3 2 6 6 C 1.47524 * 125.76628 * 179.89680 * 5 4 3 7 7 O 1.21597 * 120.00224 * 352.66973 * 6 5 4 8 8 N 1.34771 * 119.99980 * 172.66806 * 6 5 4 9 9 C 1.46926 * 120.63369 * 352.71478 * 8 6 5 10 10 C 1.53190 * 108.77954 * 233.58905 * 9 8 6 11 11 C 1.53042 * 109.31087 * 305.35950 * 10 9 8 12 12 H 1.08999 * 109.46067 * 181.38175 * 11 10 9 13 13 C 1.53002 * 109.46073 * 301.36199 * 11 10 9 14 14 C 1.53046 * 109.53433 * 61.36434 * 11 10 9 15 15 H 1.09005 * 109.49633 * 58.58618 * 14 11 10 16 16 C 1.53001 * 109.49602 * 178.67854 * 14 11 10 17 17 N 1.46495 * 109.47414 * 184.83863 * 16 14 11 18 18 C 1.36938 * 120.00468 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99688 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00228 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99789 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47514 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47074 * 120.00109 * 22 20 18 25 25 H 1.48497 * 109.46911 * 239.99493 * 22 20 18 26 26 C 1.46935 * 120.63263 * 172.69027 * 8 6 5 27 27 N 1.34392 * 108.46350 * 359.63540 * 5 4 3 28 28 N 1.28762 * 109.52484 * 0.22533 * 27 5 4 29 29 H 1.08995 * 109.47040 * 59.99520 * 1 2 3 30 30 H 1.08999 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46805 * 299.99545 * 1 2 3 32 32 H 1.09003 * 109.47129 * 240.00074 * 2 1 3 33 33 H 1.09002 * 109.47304 * 120.00748 * 2 1 3 34 34 H 1.07994 * 126.58607 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.58241 * 353.37630 * 9 8 6 36 36 H 1.09003 * 109.58584 * 113.65394 * 9 8 6 37 37 H 1.09000 * 109.49739 * 65.31154 * 10 9 8 38 38 H 1.08994 * 109.49691 * 185.41269 * 10 9 8 39 39 H 1.08997 * 109.47521 * 59.99871 * 13 11 10 40 40 H 1.09005 * 109.46623 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46795 * 299.99523 * 13 11 10 42 42 H 1.08993 * 109.47388 * 304.84594 * 16 14 11 43 43 H 1.09004 * 109.46975 * 64.84508 * 16 14 11 44 44 H 0.97004 * 119.99614 * 0.02562 * 17 16 14 45 45 H 0.97006 * 119.99626 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.58676 * 246.19975 * 26 8 6 47 47 H 1.08999 * 109.58034 * 6.63141 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8752 1.9306 0.8841 5 6 3.0502 3.2323 0.5087 6 6 3.9075 4.2191 1.1926 7 8 4.4295 3.9387 2.2544 8 7 4.1121 5.4314 0.6405 9 6 3.6222 5.7304 -0.7120 10 6 4.7898 6.2521 -1.5554 11 6 5.4360 7.4429 -0.8435 12 1 6.2517 7.8314 -1.4532 13 6 4.3900 8.5394 -0.6325 14 6 5.9830 6.9927 0.5131 15 1 6.7102 6.1942 0.3653 16 6 6.6578 8.1761 1.2097 17 7 7.2815 7.7194 2.4541 18 6 7.9487 8.6096 3.2526 19 1 8.0156 9.6483 2.9646 20 6 8.5401 8.1767 4.4314 21 7 8.4591 6.9106 4.7820 22 14 9.4497 9.3912 5.5208 23 1 9.3961 10.7426 4.9078 24 1 8.8106 9.4293 6.8607 25 1 10.8660 8.9670 5.6599 26 6 4.8289 6.4795 1.3799 27 7 2.3140 3.4605 -0.5922 28 7 1.6886 2.3844 -0.9224 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 3.3332 1.4371 1.7285 35 1 3.2215 4.8232 -1.1643 36 1 2.8403 6.4880 -0.6583 37 1 5.5282 5.4605 -1.6836 38 1 4.4212 6.5680 -2.5312 39 1 3.5740 8.1509 -0.0232 40 1 4.8502 9.3878 -0.1259 41 1 4.0009 8.8610 -1.5986 42 1 7.4202 8.5970 0.5543 43 1 5.9119 8.9382 1.4356 44 1 7.2217 6.7863 2.7125 45 1 8.8727 6.6080 5.6057 46 1 4.1473 7.2999 1.6039 47 1 5.2245 6.0664 2.3078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133204219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = 55.926368 kcal Electronic energy + Delta-G solvation = -27702.230292 eV Core-core repulsion = 23921.865172 eV Total energy + Delta-G solvation = -3780.365120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.32502 -41.24829 -39.20167 -36.72162 -36.31744 -34.83576 -33.48230 -32.37827 -31.79932 -31.00795 -28.70256 -27.38511 -26.05613 -25.61710 -24.82812 -23.88699 -22.76990 -22.47830 -21.08935 -19.66614 -18.93357 -18.39815 -17.56560 -17.24720 -17.08039 -16.75414 -16.17944 -16.01920 -15.82875 -15.64837 -15.34504 -15.20311 -14.84468 -14.53944 -14.46620 -14.15434 -13.82723 -13.72903 -13.46767 -13.30126 -13.02990 -12.92655 -12.86746 -12.65994 -12.45952 -12.34391 -12.13374 -12.05151 -11.88626 -11.86310 -11.63869 -11.39479 -11.31209 -11.21656 -10.92852 -10.77712 -10.38557 -9.55804 -8.97716 -7.92041 -5.22222 0.12440 0.55902 1.09469 1.46657 1.48648 1.58750 1.92693 2.17035 2.57157 3.08036 3.35188 3.40645 3.65668 3.77736 3.87534 3.88964 3.94472 4.00472 4.10986 4.19303 4.27987 4.30419 4.34134 4.41373 4.49851 4.59023 4.67924 4.75512 4.80836 4.82176 4.87209 4.92304 4.97226 5.12048 5.15650 5.19862 5.25054 5.27885 5.31946 5.42434 5.46700 5.51205 5.57788 5.66112 6.28765 6.35017 6.82259 7.09059 7.34126 8.10652 8.33360 9.31687 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002987 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.169982 B = 9372.553511 C =10748.145109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.345 5.345 4 C 0.107 3.893 5 C -0.119 4.119 6 C 0.590 3.410 7 O -0.578 6.578 8 N -0.593 5.593 9 C 0.084 3.916 10 C -0.120 4.120 11 C -0.079 4.079 12 H 0.081 0.919 13 C -0.148 4.148 14 C -0.089 4.089 15 H 0.050 0.950 16 C 0.161 3.839 17 N -0.748 5.748 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.971 5.971 22 Si 0.976 3.024 23 H -0.263 1.263 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.130 3.870 27 N -0.216 5.216 28 N -0.081 5.081 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.230 0.770 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.075 0.925 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 -13.763 -16.534 28.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.130 5.130 4 C -0.051 4.051 5 C -0.258 4.258 6 C 0.377 3.623 7 O -0.457 6.457 8 N -0.324 5.324 9 C -0.038 4.038 10 C -0.158 4.158 11 C -0.098 4.098 12 H 0.100 0.900 13 C -0.205 4.205 14 C -0.108 4.108 15 H 0.069 0.931 16 C 0.034 3.966 17 N -0.390 5.390 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.007 3.993 27 N -0.089 5.089 28 N -0.061 5.061 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.246 0.754 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.093 0.907 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.831 -13.452 -17.226 28.850 hybrid contribution 1.373 -0.075 2.066 2.482 sum -17.458 -13.527 -15.160 26.788 Atomic orbital electron populations 1.22081 0.92438 1.05005 1.02701 1.22600 0.97103 0.73887 1.07704 1.50897 1.30266 1.13214 1.18660 1.23766 0.92146 0.93061 0.96095 1.21252 1.08645 0.95775 1.00156 1.17311 0.79693 0.81448 0.83805 1.90842 1.51948 1.78603 1.24291 1.48000 1.55077 1.11441 1.17857 1.22687 0.96615 1.04498 0.80021 1.21928 0.97318 0.97092 0.99506 1.21073 0.98752 0.96284 0.93711 0.90042 1.21948 0.98304 0.97681 1.02587 1.21528 0.95845 0.97263 0.96210 0.93127 1.20851 0.94328 0.94820 0.86588 1.42690 1.64669 1.08807 1.22874 1.19700 1.25040 0.91926 1.00787 0.90321 1.25652 1.03326 0.97961 1.00308 1.69881 1.51110 1.15800 1.25412 0.85024 0.77481 0.78609 0.78350 1.18726 1.22123 1.22066 1.21470 0.93594 0.89458 0.94759 1.74342 1.05676 1.18503 1.10358 1.81853 1.20297 0.90980 1.12978 0.92276 0.87219 0.92773 0.86472 0.84468 0.75368 0.85514 0.90234 0.92751 0.87620 0.92851 0.92930 0.90318 0.95767 0.95046 0.79738 0.94135 0.90706 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 10.12 71.98 0.73 -0.15 16 2 C 0.11 0.55 7.26 86.38 0.63 1.18 16 3 N -0.34 -5.35 3.69 -347.09 -1.28 -6.63 16 4 C 0.11 2.06 11.28 83.85 0.95 3.01 16 5 C -0.12 -3.22 6.69 40.82 0.27 -2.94 16 6 C 0.59 20.58 7.67 86.69 0.67 21.25 16 7 O -0.58 -24.84 16.30 -4.02 -0.07 -24.90 16 8 N -0.59 -19.29 2.97 -822.66 -2.45 -21.73 16 9 C 0.08 2.08 5.61 86.36 0.48 2.56 16 10 C -0.12 -2.67 5.63 30.67 0.17 -2.50 16 11 C -0.08 -2.03 2.71 -10.76 -0.03 -2.06 16 12 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.15 -3.36 8.11 71.98 0.58 -2.78 16 14 C -0.09 -3.14 2.15 -10.71 -0.02 -3.16 16 15 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 16 C 0.16 6.74 5.19 86.38 0.45 7.19 16 17 N -0.75 -40.67 5.38 -343.47 -1.85 -42.52 16 18 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 21 N -0.97 -63.20 13.06 21.65 0.28 -62.92 16 22 Si 0.98 48.15 29.55 68.60 2.03 50.17 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 25 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 26 C 0.13 4.85 5.06 86.36 0.44 5.28 16 27 N -0.22 -5.47 8.79 -50.00 -0.44 -5.91 16 28 N -0.08 -1.78 13.65 37.02 0.51 -1.27 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.26 16 33 H 0.14 -0.07 8.08 -2.39 -0.02 -0.09 16 34 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.13 3.13 4.12 -35.99 -0.15 2.98 16 36 H 0.08 1.80 6.70 -2.39 -0.02 1.78 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.26 4.98 -2.39 -0.01 1.25 16 40 H 0.05 1.30 6.57 -2.38 -0.02 1.29 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.03 1.29 6.72 -2.38 -0.02 1.27 16 44 H 0.37 22.08 6.89 -92.71 -0.64 21.44 16 45 H 0.25 15.69 8.31 -92.70 -0.77 14.92 16 46 H 0.07 2.66 6.69 -2.39 -0.02 2.65 16 47 H 0.06 2.66 6.20 -2.39 -0.01 2.65 16 Total: -1.00 -80.97 370.26 3.57 -77.40 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.21 Total: 29.23 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.62 Total: 9.09 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -5.22 Total: -140.99 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.17 kcal Total: -80.97 3.57 -77.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.327 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds