Wall clock time and date at job start Fri Apr 10 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46932 * 2 1 4 4 C 1.34810 * 126.59280 * 125.00429 * 3 2 1 5 5 C 1.36600 * 106.83878 * 179.76094 * 4 3 2 6 6 C 1.47521 * 125.76740 * 180.21678 * 5 4 3 7 7 O 1.21599 * 120.00484 * 7.30764 * 6 5 4 8 8 N 1.34775 * 119.99934 * 187.30334 * 6 5 4 9 9 C 1.46932 * 120.62735 * 7.08853 * 8 6 5 10 10 C 1.53626 * 108.53942 * 126.36945 * 9 8 6 11 11 C 1.53041 * 109.24544 * 54.85786 * 10 9 8 12 12 H 1.08993 * 109.46074 * 178.49251 * 11 10 9 13 13 C 1.52998 * 109.44747 * 58.52140 * 11 10 9 14 14 C 1.53039 * 109.53360 * 298.51015 * 11 10 9 15 15 H 1.09002 * 109.50073 * 301.40796 * 14 11 10 16 16 C 1.53002 * 109.52339 * 181.33296 * 14 11 10 17 17 N 1.46495 * 109.47311 * 175.14540 * 16 14 11 18 18 C 1.36936 * 120.00070 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00286 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00020 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00199 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00152 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47067 * 90.00171 * 22 20 18 24 24 H 1.48507 * 109.46880 * 210.00186 * 22 20 18 25 25 H 1.48498 * 109.46905 * 329.99794 * 22 20 18 26 26 C 1.46919 * 120.63485 * 187.37185 * 8 6 5 27 27 N 1.34394 * 108.45642 * 0.24056 * 5 4 3 28 28 N 1.28760 * 109.52922 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.47794 * 59.99888 * 1 2 3 30 30 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47029 * 299.99464 * 1 2 3 32 32 H 1.08997 * 109.46816 * 240.00394 * 2 1 3 33 33 H 1.08994 * 109.46955 * 120.00261 * 2 1 3 34 34 H 1.08004 * 126.57784 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.58586 * 246.19696 * 9 8 6 36 36 H 1.08996 * 109.58952 * 6.63011 * 9 8 6 37 37 H 1.08998 * 109.63329 * 294.86318 * 10 9 8 38 38 H 1.08998 * 109.43159 * 174.72636 * 10 9 8 39 39 H 1.08999 * 109.47457 * 299.94068 * 13 11 10 40 40 H 1.08993 * 109.47189 * 59.94187 * 13 11 10 41 41 H 1.08998 * 109.46831 * 179.97438 * 13 11 10 42 42 H 1.09007 * 109.46953 * 295.14658 * 16 14 11 43 43 H 1.08994 * 109.47176 * 55.14360 * 16 14 11 44 44 H 0.97006 * 120.00289 * 0.02562 * 17 16 14 45 45 H 0.96992 * 120.00253 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58848 * 353.36727 * 26 8 6 47 47 H 1.09000 * 109.59464 * 113.79924 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0546 3.2309 0.5053 6 6 3.9166 4.2159 1.1856 7 8 4.6423 3.8633 2.0954 8 7 3.8999 5.5068 0.7987 9 6 2.9211 5.9794 -0.1899 10 6 2.1714 7.1828 0.4017 11 6 3.1846 8.2431 0.8389 12 1 2.6554 9.1099 1.2347 13 6 4.0293 8.6672 -0.3643 14 6 4.0962 7.6636 1.9230 15 1 3.4926 7.3384 2.7703 16 6 5.0876 8.7342 2.3834 17 7 5.8820 8.2163 3.5000 18 6 6.8413 9.0024 4.0805 19 1 7.0120 10.0044 3.7154 20 6 7.5937 8.5118 5.1388 21 7 8.5154 9.2675 5.6972 22 14 7.2980 6.7789 5.7708 23 1 8.1698 5.8282 5.0351 24 1 7.6143 6.7202 7.2206 25 1 5.8750 6.4110 5.5593 26 6 4.8642 6.4669 1.3528 27 7 2.3162 3.4596 -0.5940 28 7 1.6853 2.3855 -0.9200 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3268 1.4394 1.7331 35 1 3.4380 6.2797 -1.1013 36 1 2.2138 5.1810 -0.4144 37 1 1.5859 6.8620 1.2633 38 1 1.5075 7.6035 -0.3535 39 1 4.5591 7.8007 -0.7599 40 1 3.3802 9.0799 -1.1365 41 1 4.7508 9.4228 -0.0534 42 1 5.7491 8.9961 1.5576 43 1 4.5414 9.6204 2.7064 44 1 5.7290 7.3161 3.8277 45 1 9.0409 8.9249 6.4369 46 1 5.4395 5.9903 2.1465 47 1 5.5363 6.8061 0.5646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133204220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:45 Heat of formation + Delta-G solvation = 84.322841 kcal Electronic energy + Delta-G solvation = -27848.189355 eV Core-core repulsion = 24069.055598 eV Total energy + Delta-G solvation = -3779.133757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.54661 -40.12724 -38.00873 -35.91734 -34.98410 -33.51255 -31.87283 -31.70151 -30.82601 -29.97289 -27.65437 -26.09028 -25.09508 -24.83479 -23.01457 -22.77642 -22.08423 -21.00499 -20.11695 -18.56683 -17.55560 -17.37203 -16.66824 -16.46020 -16.08314 -15.31806 -15.04896 -14.95913 -14.83206 -14.60697 -14.19042 -13.81905 -13.63828 -13.40348 -13.22570 -12.95102 -12.91923 -12.61379 -12.54303 -12.50191 -12.35064 -11.82535 -11.66153 -11.46215 -11.17497 -11.09472 -10.89651 -10.75673 -10.70235 -10.47681 -10.23431 -10.10054 -10.01367 -9.71798 -9.54302 -9.47838 -8.79922 -8.42536 -7.13363 -5.68549 -3.03475 0.84515 1.49323 1.66155 2.99020 3.22154 3.49153 3.54436 3.56989 3.83888 3.93572 4.22954 4.37874 4.49926 4.66528 4.69451 4.81840 4.85636 4.93067 4.96348 4.97929 5.12032 5.20918 5.30175 5.40187 5.48098 5.55552 5.62191 5.65037 5.74232 5.78265 5.88086 5.94931 5.99595 6.01894 6.11420 6.13121 6.30531 6.36302 6.39172 6.52221 6.66895 6.76201 6.87862 7.42726 7.66938 8.07842 8.17619 8.50647 9.30267 10.03228 10.22953 11.49820 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.003429 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.345905 B = 8164.583624 C = 9683.061591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.360 5.360 4 C 0.092 3.908 5 C -0.093 4.093 6 C 0.598 3.402 7 O -0.536 6.536 8 N -0.593 5.593 9 C 0.084 3.916 10 C -0.127 4.127 11 C -0.085 4.085 12 H 0.074 0.926 13 C -0.153 4.153 14 C -0.106 4.106 15 H 0.073 0.927 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.118 3.882 27 N -0.204 5.204 28 N -0.068 5.068 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.096 0.904 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.958 -18.251 -15.913 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.146 5.146 4 C -0.064 4.064 5 C -0.232 4.232 6 C 0.383 3.617 7 O -0.412 6.412 8 N -0.324 5.324 9 C -0.039 4.039 10 C -0.166 4.166 11 C -0.104 4.104 12 H 0.092 0.908 13 C -0.210 4.210 14 C -0.125 4.125 15 H 0.091 0.909 16 C 0.037 3.963 17 N -0.403 5.403 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.218 1.218 25 H -0.202 1.202 26 C -0.003 4.003 27 N -0.078 5.078 28 N -0.048 5.048 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.222 0.778 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.195 0.805 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.244 -17.966 -16.637 31.143 hybrid contribution 0.400 -1.551 1.459 2.167 sum -18.844 -19.518 -15.178 31.087 Atomic orbital electron populations 1.22092 0.92673 1.03736 1.04084 1.22058 0.96920 0.76159 1.05209 1.50575 1.31684 1.12267 1.20057 1.23413 0.93068 0.94010 0.95932 1.21528 1.07574 0.95142 0.98915 1.16848 0.81265 0.81482 0.82105 1.90848 1.41852 1.79238 1.29273 1.47926 1.34216 1.07635 1.42664 1.22612 0.92163 0.98642 0.90519 1.22020 0.97778 0.95765 1.01000 1.21072 0.95878 0.97739 0.95687 0.90798 1.21990 1.00058 1.01694 0.97289 1.21735 0.97372 0.95768 0.97639 0.90871 1.20670 0.91513 0.93712 0.90398 1.42792 1.43369 1.15626 1.38522 1.19048 1.09167 0.97673 1.11264 0.89237 1.24653 0.98291 0.97661 0.98516 1.69707 1.25524 1.36268 1.26920 0.86585 0.78096 0.85972 0.78190 1.20896 1.21832 1.20181 1.21805 0.90457 0.88724 0.99363 1.74416 1.05347 1.17255 1.10742 1.81959 1.20601 0.90374 1.11834 0.90676 0.89854 0.91650 0.88281 0.87611 0.77832 0.91229 0.85954 0.91891 0.90854 0.92400 0.93032 0.91744 0.95011 0.95288 0.80513 0.93155 0.88607 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.11 37.16 0.38 -0.18 16 2 C 0.12 0.42 7.26 -4.04 -0.03 0.39 16 3 N -0.36 -2.91 3.69 -61.06 -0.23 -3.13 16 4 C 0.09 0.87 11.28 -16.84 -0.19 0.68 16 5 C -0.09 -1.18 6.69 -83.55 -0.56 -1.73 16 6 C 0.60 9.38 7.67 -12.48 -0.10 9.29 16 7 O -0.54 -10.12 16.30 5.28 0.09 -10.04 16 8 N -0.59 -8.79 2.97 -173.73 -0.52 -9.30 16 9 C 0.08 1.01 5.64 -3.48 -0.02 0.99 16 10 C -0.13 -1.43 5.64 -26.39 -0.15 -1.58 16 11 C -0.08 -1.08 2.71 -90.58 -0.25 -1.32 16 12 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 13 C -0.15 -1.80 8.11 37.16 0.30 -1.50 16 14 C -0.11 -1.71 2.15 -90.50 -0.19 -1.90 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.16 3.24 5.19 -4.04 -0.02 3.22 16 17 N -0.76 -18.75 5.18 -59.91 -0.31 -19.06 16 18 C -0.24 -7.07 10.47 -15.06 -0.16 -7.22 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.94 -30.25 13.97 55.49 0.78 -29.48 16 22 Si 0.88 23.45 27.74 -169.99 -4.71 18.73 16 23 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.28 -7.08 6.52 56.52 0.37 -6.71 16 26 C 0.12 1.96 5.06 -3.71 -0.02 1.94 16 27 N -0.20 -2.52 8.79 32.85 0.29 -2.23 16 28 N -0.07 -0.75 13.64 60.35 0.82 0.08 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.11 0.12 8.08 -51.93 -0.42 -0.30 16 34 H 0.20 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.07 0.79 6.68 -51.93 -0.35 0.45 16 36 H 0.12 1.48 4.12 -78.20 -0.32 1.16 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.69 4.96 -51.93 -0.26 0.43 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 42 H 0.03 0.62 6.73 -51.93 -0.35 0.27 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.36 9.01 4.75 -40.82 -0.19 8.81 16 45 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 46 H 0.10 1.90 6.20 -51.93 -0.32 1.57 16 47 H 0.07 1.19 6.69 -51.93 -0.35 0.84 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -36.39 367.15 -6.50 -42.89 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.14 Total: 4.91 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.10 Total: 1.10 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: 0.84 Total: -63.13 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.71 Total: 18.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.39 -6.50 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.215 kcal (2) G-P(sol) polarization free energy of solvation -36.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds