Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46932 * 2 1 4 4 C 1.34810 * 126.59280 * 125.00429 * 3 2 1 5 5 C 1.36600 * 106.83878 * 179.76094 * 4 3 2 6 6 C 1.47521 * 125.76740 * 180.21678 * 5 4 3 7 7 O 1.21599 * 120.00484 * 7.30764 * 6 5 4 8 8 N 1.34775 * 119.99934 * 187.30334 * 6 5 4 9 9 C 1.46932 * 120.62735 * 7.08853 * 8 6 5 10 10 C 1.53626 * 108.53942 * 126.36945 * 9 8 6 11 11 C 1.53041 * 109.24544 * 54.85786 * 10 9 8 12 12 H 1.08993 * 109.46074 * 178.49251 * 11 10 9 13 13 C 1.52998 * 109.44747 * 58.52140 * 11 10 9 14 14 C 1.53039 * 109.53360 * 298.51015 * 11 10 9 15 15 H 1.09002 * 109.50073 * 301.40796 * 14 11 10 16 16 C 1.53002 * 109.52339 * 181.33296 * 14 11 10 17 17 N 1.46495 * 109.47311 * 175.14540 * 16 14 11 18 18 C 1.36936 * 120.00070 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00286 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00020 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00199 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00152 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47067 * 90.00171 * 22 20 18 24 24 H 1.48507 * 109.46880 * 210.00186 * 22 20 18 25 25 H 1.48498 * 109.46905 * 329.99794 * 22 20 18 26 26 C 1.46919 * 120.63485 * 187.37185 * 8 6 5 27 27 N 1.34394 * 108.45642 * 0.24056 * 5 4 3 28 28 N 1.28760 * 109.52922 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.47794 * 59.99888 * 1 2 3 30 30 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47029 * 299.99464 * 1 2 3 32 32 H 1.08997 * 109.46816 * 240.00394 * 2 1 3 33 33 H 1.08994 * 109.46955 * 120.00261 * 2 1 3 34 34 H 1.08004 * 126.57784 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.58586 * 246.19696 * 9 8 6 36 36 H 1.08996 * 109.58952 * 6.63011 * 9 8 6 37 37 H 1.08998 * 109.63329 * 294.86318 * 10 9 8 38 38 H 1.08998 * 109.43159 * 174.72636 * 10 9 8 39 39 H 1.08999 * 109.47457 * 299.94068 * 13 11 10 40 40 H 1.08993 * 109.47189 * 59.94187 * 13 11 10 41 41 H 1.08998 * 109.46831 * 179.97438 * 13 11 10 42 42 H 1.09007 * 109.46953 * 295.14658 * 16 14 11 43 43 H 1.08994 * 109.47176 * 55.14360 * 16 14 11 44 44 H 0.97006 * 120.00289 * 0.02562 * 17 16 14 45 45 H 0.96992 * 120.00253 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58848 * 353.36727 * 26 8 6 47 47 H 1.09000 * 109.59464 * 113.79924 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0546 3.2309 0.5053 6 6 3.9166 4.2159 1.1856 7 8 4.6423 3.8633 2.0954 8 7 3.8999 5.5068 0.7987 9 6 2.9211 5.9794 -0.1899 10 6 2.1714 7.1828 0.4017 11 6 3.1846 8.2431 0.8389 12 1 2.6554 9.1099 1.2347 13 6 4.0293 8.6672 -0.3643 14 6 4.0962 7.6636 1.9230 15 1 3.4926 7.3384 2.7703 16 6 5.0876 8.7342 2.3834 17 7 5.8820 8.2163 3.5000 18 6 6.8413 9.0024 4.0805 19 1 7.0120 10.0044 3.7154 20 6 7.5937 8.5118 5.1388 21 7 8.5154 9.2675 5.6972 22 14 7.2980 6.7789 5.7708 23 1 8.1698 5.8282 5.0351 24 1 7.6143 6.7202 7.2206 25 1 5.8750 6.4110 5.5593 26 6 4.8642 6.4669 1.3528 27 7 2.3162 3.4596 -0.5940 28 7 1.6853 2.3855 -0.9200 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3268 1.4394 1.7331 35 1 3.4380 6.2797 -1.1013 36 1 2.2138 5.1810 -0.4144 37 1 1.5859 6.8620 1.2633 38 1 1.5075 7.6035 -0.3535 39 1 4.5591 7.8007 -0.7599 40 1 3.3802 9.0799 -1.1365 41 1 4.7508 9.4228 -0.0534 42 1 5.7491 8.9961 1.5576 43 1 4.5414 9.6204 2.7064 44 1 5.7290 7.3161 3.8277 45 1 9.0409 8.9249 6.4369 46 1 5.4395 5.9903 2.1465 47 1 5.5363 6.8061 0.5646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133204220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = 58.624474 kcal Electronic energy + Delta-G solvation = -27849.303720 eV Core-core repulsion = 24069.055598 eV Total energy + Delta-G solvation = -3780.248121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34126 -41.28448 -39.24451 -36.84609 -36.36899 -34.86523 -33.65730 -32.40858 -32.03636 -31.15124 -28.75960 -27.55885 -26.05787 -25.61105 -24.56092 -23.91431 -22.77951 -22.49513 -21.19499 -19.93636 -19.19185 -18.40615 -17.63445 -17.20676 -17.13068 -16.76645 -16.24768 -16.09718 -15.93689 -15.75449 -15.20807 -15.15879 -14.99255 -14.61955 -14.55058 -14.18026 -13.88101 -13.78692 -13.52171 -13.36980 -13.30940 -12.99777 -12.97797 -12.67416 -12.51025 -12.30445 -12.17174 -12.09471 -11.91629 -11.85483 -11.66862 -11.44081 -11.33115 -11.28368 -10.98583 -10.79948 -10.40174 -9.58964 -9.29196 -8.04623 -5.36497 0.11223 0.53790 1.08253 1.35343 1.38424 1.44157 1.89331 2.13869 2.45383 3.06143 3.27267 3.33627 3.51572 3.70643 3.83317 3.84903 3.92009 3.98985 4.01016 4.08705 4.25981 4.27373 4.31010 4.37976 4.47394 4.54052 4.64584 4.74495 4.77697 4.79052 4.85402 4.90761 4.94266 5.08062 5.13840 5.19177 5.23183 5.25263 5.29600 5.40416 5.45077 5.55224 5.63947 5.75204 6.20308 6.30931 6.79913 7.05245 7.06123 7.83554 8.00811 9.16986 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.003429 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.345905 B = 8164.583624 C = 9683.061591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.345 5.345 4 C 0.108 3.892 5 C -0.120 4.120 6 C 0.593 3.407 7 O -0.578 6.578 8 N -0.593 5.593 9 C 0.083 3.917 10 C -0.120 4.120 11 C -0.079 4.079 12 H 0.082 0.918 13 C -0.150 4.150 14 C -0.093 4.093 15 H 0.059 0.941 16 C 0.163 3.837 17 N -0.761 5.761 18 C -0.229 4.229 19 H 0.063 0.937 20 C -0.058 4.058 21 N -0.981 5.981 22 Si 0.946 3.054 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.264 1.264 26 C 0.123 3.877 27 N -0.216 5.216 28 N -0.082 5.082 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.060 0.940 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.300 -20.527 -17.402 34.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.131 5.131 4 C -0.050 4.050 5 C -0.260 4.260 6 C 0.380 3.620 7 O -0.458 6.458 8 N -0.323 5.323 9 C -0.039 4.039 10 C -0.158 4.158 11 C -0.098 4.098 12 H 0.100 0.900 13 C -0.207 4.207 14 C -0.113 4.113 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.407 5.407 18 C -0.360 4.360 19 H 0.081 0.919 20 C -0.250 4.250 21 N -0.632 5.632 22 Si 0.774 3.226 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.189 1.189 26 C 0.000 4.000 27 N -0.089 5.089 28 N -0.062 5.062 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.195 0.805 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.662 -20.253 -18.195 34.792 hybrid contribution 1.065 -0.870 1.825 2.286 sum -20.597 -21.123 -16.370 33.740 Atomic orbital electron populations 1.22082 0.92430 1.04985 1.02750 1.22594 0.97115 0.73908 1.07664 1.50905 1.30428 1.13169 1.18557 1.23780 0.92179 0.92990 0.96083 1.21260 1.08852 0.95815 1.00028 1.17261 0.81060 0.81990 0.81676 1.90809 1.43760 1.79971 1.31249 1.47997 1.34206 1.07312 1.42828 1.22795 0.91753 0.99154 0.90161 1.21998 0.97419 0.94804 1.01578 1.21062 0.95620 0.98322 0.94821 0.89956 1.21962 1.00065 1.01285 0.97399 1.21597 0.96691 0.94598 0.98431 0.92249 1.20852 0.91789 0.94856 0.88861 1.42865 1.43050 1.15225 1.39552 1.19071 1.09355 0.96921 1.10646 0.91863 1.25369 0.98633 1.01629 0.99364 1.69855 1.27069 1.38310 1.27930 0.85544 0.78488 0.81149 0.77407 1.20835 1.21595 1.18897 1.21570 0.90886 0.88963 0.98551 1.74346 1.05616 1.18162 1.10776 1.81875 1.20721 0.90819 1.12763 0.92280 0.87319 0.92659 0.86605 0.84412 0.75270 0.90195 0.85489 0.92507 0.87824 0.92673 0.90456 0.93011 0.94514 0.95174 0.80524 0.93289 0.92102 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 10.11 71.98 0.73 0.07 16 2 C 0.11 0.40 7.26 86.38 0.63 1.02 16 3 N -0.35 -4.73 3.69 -347.09 -1.28 -6.01 16 4 C 0.11 1.81 11.28 83.85 0.95 2.76 16 5 C -0.12 -2.93 6.69 40.82 0.27 -2.66 16 6 C 0.59 18.57 7.67 86.69 0.67 19.23 16 7 O -0.58 -22.17 16.30 -4.03 -0.07 -22.24 16 8 N -0.59 -17.32 2.97 -821.82 -2.44 -19.75 16 9 C 0.08 1.87 5.64 86.51 0.49 2.36 16 10 C -0.12 -2.40 5.64 30.82 0.17 -2.22 16 11 C -0.08 -1.85 2.71 -10.77 -0.03 -1.88 16 12 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 13 C -0.15 -3.19 8.11 71.98 0.58 -2.60 16 14 C -0.09 -2.98 2.15 -10.71 -0.02 -3.00 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C 0.16 6.40 5.19 86.38 0.45 6.85 16 17 N -0.76 -38.07 5.18 -343.46 -1.78 -39.85 16 18 C -0.23 -13.66 10.47 84.03 0.88 -12.78 16 19 H 0.06 4.05 8.06 -2.91 -0.02 4.02 16 20 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 21 N -0.98 -64.91 13.97 21.65 0.30 -64.61 16 22 Si 0.95 49.37 27.74 68.60 1.90 51.27 16 23 H -0.28 -14.60 7.11 99.48 0.71 -13.90 16 24 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 25 H -0.26 -13.08 6.52 99.48 0.65 -12.43 16 26 C 0.12 4.10 5.06 86.37 0.44 4.53 16 27 N -0.22 -5.04 8.79 -50.00 -0.44 -5.48 16 28 N -0.08 -1.66 13.64 37.02 0.51 -1.15 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.14 -0.29 8.08 -2.39 -0.02 -0.31 16 34 H 0.23 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.08 1.64 6.68 -2.39 -0.02 1.63 16 36 H 0.13 2.86 4.12 -36.38 -0.15 2.71 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.20 4.96 -2.39 -0.01 1.19 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.23 6.57 -2.39 -0.02 1.22 16 42 H 0.04 1.43 6.73 -2.38 -0.02 1.42 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.36 18.10 4.75 -92.70 -0.44 17.66 16 45 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 46 H 0.06 2.47 6.20 -2.39 -0.01 2.46 16 47 H 0.08 2.53 6.69 -2.39 -0.02 2.51 16 Total: -1.00 -81.31 367.15 3.72 -77.59 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.35 Total: 21.71 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.67 Total: 8.53 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -5.13 Total: -136.86 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.07 Total: -22.24 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.90 Total: 51.27 kcal Total: -81.31 3.72 -77.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.217 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds