Wall clock time and date at job start Fri Apr 10 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47333 * 2 1 4 4 C 1.34813 * 126.59697 * 124.99579 * 3 2 1 5 5 C 1.36593 * 106.84116 * 180.02562 * 4 3 2 6 6 C 1.47521 * 125.77290 * 179.97438 * 5 4 3 7 7 O 1.21602 * 119.99846 * 353.27680 * 6 5 4 8 8 N 1.34777 * 120.00537 * 173.27598 * 6 5 4 9 9 C 1.46930 * 120.62768 * 354.28525 * 8 6 5 10 10 C 1.53189 * 108.77891 * 126.40891 * 9 8 6 11 11 C 1.53039 * 109.31040 * 54.63220 * 10 9 8 12 12 H 1.08999 * 109.46484 * 58.65850 * 11 10 9 13 13 C 1.53001 * 109.44797 * 178.62097 * 11 10 9 14 14 C 1.53046 * 109.53988 * 298.63346 * 11 10 9 15 15 H 1.09002 * 109.49760 * 301.41552 * 14 11 10 16 16 C 1.53001 * 109.52334 * 181.33432 * 14 11 10 17 17 N 1.46496 * 109.46758 * 175.14571 * 16 14 11 18 18 C 1.36945 * 119.99849 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99984 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00044 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99917 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99805 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47149 * 90.00159 * 22 20 18 24 24 H 1.48503 * 109.46959 * 209.99873 * 22 20 18 25 25 H 1.48494 * 109.47157 * 330.00127 * 22 20 18 26 26 C 1.46923 * 120.63222 * 174.29861 * 8 6 5 27 27 N 1.34403 * 108.45863 * 0.24345 * 5 4 3 28 28 N 1.28763 * 109.52218 * 359.58832 * 27 5 4 29 29 H 1.08996 * 109.47156 * 300.00265 * 1 2 3 30 30 H 1.09007 * 109.46825 * 59.99940 * 1 2 3 31 31 H 1.08999 * 109.47681 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47156 * 239.99735 * 2 1 3 33 33 H 1.08998 * 109.47108 * 120.00085 * 2 1 3 34 34 H 1.08000 * 126.57825 * 0.02562 * 4 3 2 35 35 H 1.08999 * 109.58433 * 6.61792 * 9 8 6 36 36 H 1.09002 * 109.69819 * 246.26473 * 9 8 6 37 37 H 1.08999 * 109.49680 * 294.68009 * 10 9 8 38 38 H 1.08996 * 109.52437 * 174.59897 * 10 9 8 39 39 H 1.09001 * 109.47214 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47342 * 300.06448 * 13 11 10 41 41 H 1.09000 * 109.47035 * 60.06064 * 13 11 10 42 42 H 1.08997 * 109.47245 * 295.14401 * 16 14 11 43 43 H 1.09002 * 109.47146 * 55.15110 * 16 14 11 44 44 H 0.96998 * 120.00693 * 0.02562 * 17 16 14 45 45 H 0.97003 * 119.99847 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.58728 * 113.80528 * 26 8 6 47 47 H 1.09001 * 109.58860 * 353.37361 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0500 3.2324 0.5088 6 6 3.9063 4.2196 1.1932 7 8 4.4330 3.9371 2.2522 8 7 4.1050 5.4346 0.6448 9 6 3.5795 5.7480 -0.6911 10 6 2.7388 7.0255 -0.6031 11 6 3.5793 8.1426 0.0197 12 1 4.4691 8.3091 -0.5873 13 6 2.7537 9.4294 0.0775 14 6 3.9963 7.7403 1.4362 15 1 3.1070 7.5497 2.0370 16 6 4.8085 8.8712 2.0707 17 7 5.1081 8.5345 3.4646 18 6 5.8297 9.4034 4.2389 19 1 6.1781 10.3367 3.8219 20 6 6.1141 9.0842 5.5596 21 7 6.8081 9.9192 6.3036 22 14 5.5120 7.4696 6.2807 23 1 6.5383 6.4181 6.0656 24 1 5.2721 7.6366 7.7366 25 1 4.2471 7.0705 5.6131 26 6 4.8513 6.4709 1.3713 27 7 2.3088 3.4622 -0.5887 28 7 1.6878 2.3846 -0.9218 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3266 1.4395 1.7333 35 1 2.9573 4.9244 -1.0413 36 1 4.4065 5.9018 -1.3843 37 1 1.8613 6.8416 0.0169 38 1 2.4221 7.3227 -1.6028 39 1 3.3521 10.2255 0.5206 40 1 2.4565 9.7161 -0.9313 41 1 1.8640 9.2633 0.6849 42 1 5.7400 9.0025 1.5203 43 1 4.2324 9.7959 2.0361 44 1 4.7955 7.6961 3.8391 45 1 7.0072 9.6959 7.2264 46 1 5.7834 6.6845 0.8481 47 1 5.0681 6.1244 2.3818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133204222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:49 Heat of formation + Delta-G solvation = 57.429455 kcal Electronic energy + Delta-G solvation = -27743.847188 eV Core-core repulsion = 23963.547246 eV Total energy + Delta-G solvation = -3780.299941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.35476 -41.14814 -39.16649 -36.85023 -36.36028 -35.05350 -33.69589 -32.42236 -32.06981 -31.17585 -29.26274 -27.59112 -25.64171 -25.26768 -24.54380 -23.46934 -22.71627 -22.52435 -21.39866 -20.37003 -19.63355 -18.54439 -17.53030 -17.20701 -17.14016 -16.71853 -16.28952 -15.95273 -15.81848 -15.54491 -15.26403 -15.17404 -14.87081 -14.62631 -14.43821 -14.25697 -14.06657 -13.80553 -13.49962 -13.36623 -13.30146 -12.99181 -12.89140 -12.69187 -12.63156 -12.42197 -12.20786 -12.16997 -11.90057 -11.86481 -11.66146 -11.40372 -11.34933 -11.24427 -11.00839 -10.67392 -10.41596 -9.65648 -9.28666 -8.04875 -5.36633 0.10999 0.51898 1.07453 1.34566 1.37944 1.43138 1.89437 2.13613 2.44955 3.04432 3.27094 3.32953 3.50693 3.69886 3.81656 3.85155 3.91469 3.98828 4.00180 4.08158 4.22968 4.26597 4.31263 4.37316 4.51453 4.59024 4.63228 4.73966 4.76343 4.79789 4.88026 4.93565 4.94853 5.05540 5.12789 5.17670 5.21832 5.23586 5.31103 5.44115 5.46197 5.57068 5.65244 5.75132 6.20075 6.30311 6.79734 7.04921 7.05845 7.83234 8.00483 9.16787 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.003465 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.558043 B = 8077.863743 C = 9593.430386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.344 5.344 4 C 0.109 3.891 5 C -0.120 4.120 6 C 0.593 3.407 7 O -0.578 6.578 8 N -0.593 5.593 9 C 0.067 3.933 10 C -0.114 4.114 11 C -0.079 4.079 12 H 0.083 0.917 13 C -0.145 4.145 14 C -0.092 4.092 15 H 0.058 0.942 16 C 0.160 3.840 17 N -0.761 5.761 18 C -0.229 4.229 19 H 0.064 0.936 20 C -0.058 4.058 21 N -0.981 5.981 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.265 1.265 26 C 0.122 3.878 27 N -0.216 5.216 28 N -0.080 5.080 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.232 0.768 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.039 0.961 44 H 0.361 0.639 45 H 0.258 0.742 46 H 0.077 0.923 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.827 -23.036 -20.662 34.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.130 5.130 4 C -0.049 4.049 5 C -0.259 4.259 6 C 0.380 3.620 7 O -0.458 6.458 8 N -0.324 5.324 9 C -0.055 4.055 10 C -0.152 4.152 11 C -0.098 4.098 12 H 0.102 0.898 13 C -0.203 4.203 14 C -0.112 4.112 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.407 5.407 18 C -0.360 4.360 19 H 0.082 0.918 20 C -0.250 4.250 21 N -0.632 5.632 22 Si 0.774 3.226 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.190 1.190 26 C 0.000 4.000 27 N -0.089 5.089 28 N -0.060 5.060 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.194 0.806 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.301 -22.731 -21.361 34.743 hybrid contribution 0.632 -0.674 2.045 2.244 sum -14.669 -23.405 -19.315 33.705 Atomic orbital electron populations 1.22088 0.92599 1.04992 1.02670 1.22599 0.96980 0.73872 1.07784 1.50900 1.30410 1.13194 1.18505 1.23782 0.92116 0.93019 0.96000 1.21264 1.08598 0.95814 1.00215 1.17269 0.79662 0.81545 0.83523 1.90807 1.52076 1.78862 1.24028 1.48012 1.53790 1.11328 1.19219 1.22972 0.99476 1.01575 0.81483 1.21863 0.97596 0.93354 1.02402 1.21101 0.99482 0.95793 0.93449 0.89837 1.21860 0.99470 0.96450 1.02483 1.21622 0.97780 0.93728 0.98055 0.92361 1.20902 0.96659 0.95988 0.83027 1.42857 1.66035 1.21588 1.10189 1.19070 1.24314 0.99627 0.92950 0.91846 1.25362 1.01213 1.01318 0.97082 1.69856 1.46226 1.38570 1.08504 0.85550 0.78871 0.80632 0.77564 1.20788 1.21578 1.18987 1.21564 0.94451 0.86958 0.97072 1.74055 1.05930 1.18179 1.10707 1.81879 1.20362 0.90829 1.12914 0.92850 0.92301 0.87252 0.86377 0.84362 0.75159 0.84028 0.90629 0.92732 0.87928 0.92978 0.90508 0.93400 0.95116 0.94269 0.80585 0.93286 0.90469 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.12 71.98 0.73 0.02 16 2 C 0.11 0.38 7.26 86.38 0.63 1.00 16 3 N -0.34 -4.66 3.69 -347.12 -1.28 -5.95 16 4 C 0.11 1.81 11.28 83.85 0.95 2.75 16 5 C -0.12 -2.92 6.74 40.81 0.28 -2.64 16 6 C 0.59 18.63 7.68 86.69 0.67 19.29 16 7 O -0.58 -22.13 16.31 -4.04 -0.07 -22.20 16 8 N -0.59 -17.49 2.97 -822.66 -2.45 -19.93 16 9 C 0.07 1.52 6.32 86.36 0.55 2.07 16 10 C -0.11 -2.36 5.36 30.67 0.16 -2.19 16 11 C -0.08 -1.89 2.23 -10.76 -0.02 -1.91 16 12 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.15 -3.27 8.82 71.98 0.63 -2.63 16 14 C -0.09 -2.96 1.92 -10.71 -0.02 -2.99 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C 0.16 6.34 5.41 86.38 0.47 6.80 16 17 N -0.76 -38.13 5.18 -343.46 -1.78 -39.90 16 18 C -0.23 -13.65 10.47 84.03 0.88 -12.77 16 19 H 0.06 4.06 8.06 -2.91 -0.02 4.04 16 20 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 21 N -0.98 -64.94 13.97 21.65 0.30 -64.64 16 22 Si 0.95 49.39 27.74 68.60 1.90 51.29 16 23 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 25 H -0.26 -13.12 6.52 99.48 0.65 -12.47 16 26 C 0.12 4.11 5.50 86.36 0.48 4.58 16 27 N -0.22 -5.04 8.70 -50.00 -0.44 -5.48 16 28 N -0.08 -1.61 13.65 37.02 0.51 -1.11 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.14 -0.33 8.08 -2.39 -0.02 -0.35 16 34 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.14 3.21 3.65 -93.13 -0.34 2.87 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.31 6.30 -2.39 -0.02 1.29 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 1.55 6.15 -2.39 -0.01 1.53 16 44 H 0.36 18.10 4.75 -92.71 -0.44 17.66 16 45 H 0.26 16.28 8.31 -92.71 -0.77 15.50 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.06 2.52 6.24 -2.39 -0.01 2.50 16 Total: -1.00 -81.47 373.00 3.68 -77.78 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.15 Total: 21.87 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.83 Total: 8.25 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -5.13 Total: -137.00 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.20 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.90 Total: 51.29 kcal Total: -81.47 3.68 -77.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133204222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.214 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds