Wall clock time and date at job start Fri Apr 10 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46884 * 2 1 4 4 C 1.53001 * 109.46975 * 119.99454 * 2 1 3 5 5 C 1.52999 * 109.47071 * 184.99828 * 4 2 1 6 6 H 1.09003 * 109.47315 * 305.00271 * 5 4 2 7 7 C 1.53001 * 109.47328 * 185.00124 * 5 4 2 8 8 N 1.46504 * 109.46785 * 65.00324 * 5 4 2 9 9 C 1.34782 * 119.99748 * 204.99781 * 8 5 4 10 10 O 1.21560 * 119.99912 * 0.02562 * 9 8 5 11 11 C 1.47820 * 119.99838 * 180.02562 * 9 8 5 12 12 C 1.39445 * 120.00173 * 180.02562 * 11 9 8 13 13 N 1.32027 * 119.97897 * 179.97438 * 12 11 9 14 14 C 1.32792 * 119.98952 * 359.97438 * 13 12 11 15 15 N 1.38403 * 119.99202 * 179.97438 * 14 13 12 16 16 C 1.46506 * 119.99857 * 185.00474 * 15 14 13 17 17 C 1.46499 * 120.00149 * 4.72700 * 15 14 13 18 18 C 1.39838 * 120.00833 * 0.26253 * 14 13 12 19 19 N 1.31481 * 120.02056 * 359.46981 * 18 14 13 20 20 N 1.46489 * 109.47125 * 239.99419 * 2 1 3 21 21 C 1.36939 * 119.99789 * 85.00101 * 20 2 1 22 22 H 1.08000 * 119.99990 * 359.97438 * 21 20 2 23 23 C 1.38821 * 120.00069 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47187 * 89.99858 * 25 23 21 27 27 H 1.48495 * 109.46844 * 210.00030 * 25 23 21 28 28 H 1.48504 * 109.47055 * 330.00011 * 25 23 21 29 29 H 1.08991 * 109.47170 * 60.00443 * 1 2 3 30 30 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47535 * 299.99975 * 1 2 3 32 32 H 1.09004 * 109.46894 * 64.99990 * 4 2 1 33 33 H 1.08995 * 109.47801 * 305.00490 * 4 2 1 34 34 H 1.09003 * 109.47043 * 300.00314 * 7 5 4 35 35 H 1.08996 * 109.46707 * 60.00048 * 7 5 4 36 36 H 1.09000 * 109.47328 * 180.02562 * 7 5 4 37 37 H 0.96998 * 119.99988 * 25.00293 * 8 5 4 38 38 H 1.07995 * 120.01304 * 359.97438 * 12 11 9 39 39 H 1.08999 * 109.46892 * 269.72625 * 16 15 14 40 40 H 1.09000 * 109.46803 * 29.71798 * 16 15 14 41 41 H 1.09000 * 109.47214 * 149.72592 * 16 15 14 42 42 H 1.09004 * 109.46973 * 180.27857 * 17 15 14 43 43 H 1.08995 * 109.47424 * 300.27245 * 17 15 14 44 44 H 1.08998 * 109.47492 * 60.27670 * 17 15 14 45 45 H 1.08000 * 119.99201 * 179.74656 * 18 14 13 46 46 H 0.97004 * 120.00735 * 264.99964 * 20 2 1 47 47 H 0.96999 * 119.99708 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9923 0.3869 7 6 4.0852 -1.4381 2.4926 8 7 3.9479 0.7895 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9374 0.4323 0.5721 11 6 5.5480 2.6288 1.2675 12 6 6.8030 3.0678 0.8472 13 7 7.1478 4.3320 1.0085 14 6 6.2992 5.1850 1.5703 15 7 6.6608 6.5102 1.7398 16 6 5.7706 7.4263 2.4572 17 6 7.9363 6.9953 1.2072 18 6 5.0426 4.7432 1.9960 19 7 4.6968 3.4855 1.8309 20 7 2.0183 -0.6907 -1.1960 21 6 2.1491 -0.0076 -2.3756 22 1 1.8919 1.0402 -2.4243 23 6 2.6113 -0.6622 -3.5092 24 7 2.9243 -1.9393 -3.4500 25 14 2.7904 0.2698 -5.1182 26 1 4.1531 0.8539 -5.2029 27 1 2.5793 -0.6613 -6.2556 28 1 1.7811 1.3577 -5.1750 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -1.7714 1.2057 33 1 1.6054 -0.2617 2.1370 34 1 3.6545 -1.0591 3.4195 35 1 3.8001 -2.4817 2.3596 36 1 5.1714 -1.3609 2.5388 37 1 3.3284 1.4129 1.9028 38 1 7.4928 2.3740 0.3900 39 1 5.0876 7.8973 1.7503 40 1 5.1983 6.8699 3.1995 41 1 6.3635 8.1933 2.9555 42 1 8.0483 8.0542 1.4405 43 1 8.7552 6.4353 1.6588 44 1 7.9547 6.8576 0.1261 45 1 4.3542 5.4362 2.4566 46 1 2.2490 -1.6319 -1.1525 47 1 3.2477 -2.3965 -4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134395366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:56 Heat of formation + Delta-G solvation = 6.098832 kcal Electronic energy + Delta-G solvation = -27399.371105 eV Core-core repulsion = 23616.845300 eV Total energy + Delta-G solvation = -3782.525804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27600 -40.57331 -38.38988 -37.87508 -36.08568 -35.22060 -33.96912 -32.49392 -31.36520 -30.38373 -29.34486 -27.60271 -27.28438 -25.66337 -25.24518 -24.03916 -22.52937 -21.68741 -21.14600 -19.49129 -19.08909 -18.71103 -18.21369 -17.12411 -16.79831 -16.63115 -16.20055 -15.97620 -15.65631 -15.60305 -15.41284 -15.30855 -14.75650 -14.48042 -14.38594 -14.17733 -13.59365 -13.48973 -13.36012 -13.33505 -13.16470 -12.94830 -12.85948 -12.79852 -12.64980 -12.57122 -12.41784 -12.23797 -12.18289 -11.81351 -11.55406 -11.40742 -11.26616 -11.13349 -10.91224 -10.19708 -9.98339 -8.93534 -8.80716 -7.91199 -5.16223 -0.44294 0.07368 1.40911 1.44313 1.50858 1.70305 1.78788 2.22018 2.56309 2.81064 3.08481 3.21379 3.38094 3.42860 3.82027 3.92774 4.01283 4.05640 4.15866 4.22599 4.37798 4.43339 4.50037 4.54946 4.56601 4.71706 4.75207 4.80970 4.85959 4.89959 4.92212 4.95779 5.03789 5.07973 5.11946 5.25520 5.36630 5.44073 5.51964 5.63818 5.65055 5.67802 5.93142 6.28289 6.32316 6.58147 6.79728 7.29317 7.37842 8.18189 8.38682 9.32616 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.003610 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.969202 B = 7753.388705 C = 8843.155721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.037 0.963 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.050 0.950 7 C -0.150 4.150 8 N -0.687 5.687 9 C 0.575 3.425 10 O -0.580 6.580 11 C -0.069 4.069 12 C 0.163 3.837 13 N -0.525 5.525 14 C 0.364 3.636 15 N -0.592 5.592 16 C 0.077 3.923 17 C 0.094 3.906 18 C 0.006 3.994 19 N -0.381 5.381 20 N -0.730 5.730 21 C -0.226 4.226 22 H 0.066 0.934 23 C -0.077 4.077 24 N -0.967 5.967 25 Si 0.960 3.040 26 H -0.297 1.297 27 H -0.292 1.292 28 H -0.269 1.269 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.414 0.586 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.211 0.789 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 20.433 19.811 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.055 0.945 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.068 0.932 7 C -0.208 4.208 8 N -0.337 5.337 9 C 0.361 3.639 10 O -0.460 6.460 11 C -0.207 4.207 12 C 0.002 3.998 13 N -0.249 5.249 14 C 0.122 3.878 15 N -0.302 5.302 16 C -0.064 4.064 17 C -0.048 4.048 18 C -0.169 4.169 19 N -0.097 5.097 20 N -0.371 5.371 21 C -0.358 4.358 22 H 0.084 0.916 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.790 3.210 26 H -0.225 1.225 27 H -0.219 1.219 28 H -0.194 1.194 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.251 0.749 38 H 0.189 0.811 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.227 0.773 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.279 20.169 19.347 28.274 hybrid contribution 0.303 -0.089 -1.450 1.484 sum 4.582 20.080 17.897 27.286 Atomic orbital electron populations 1.22288 0.97542 1.00965 1.00649 1.20496 0.92760 0.95037 0.86118 0.94519 1.22074 0.92613 1.02393 0.98462 1.20938 0.95841 0.80604 0.98666 0.93152 1.22079 1.00438 1.00335 0.97975 1.45683 1.15696 1.11606 1.60761 1.17840 0.82507 0.86092 0.77462 1.90774 1.52945 1.56382 1.45867 1.21376 0.95306 0.94864 1.09179 1.23395 0.94248 0.91529 0.90607 1.68150 1.34019 1.02764 1.19946 1.19998 0.90738 0.87494 0.89614 1.46645 1.22151 1.04241 1.57213 1.22258 0.94387 0.92998 0.96754 1.21784 0.83495 1.00938 0.98632 1.23810 0.95479 0.93304 1.04311 1.68070 1.31591 1.02979 1.07030 1.42575 1.78222 1.10084 1.06191 1.19479 1.34136 0.93642 0.88558 0.91618 1.25412 1.03527 0.96852 1.01096 1.69795 1.53035 1.09991 1.29075 0.85324 0.77450 0.77735 0.80465 1.22493 1.21890 1.19378 0.95250 0.93654 0.90552 0.90098 0.87702 0.90116 0.90745 0.94275 0.74926 0.81079 0.90896 0.89403 0.87840 0.87157 0.92722 0.93355 0.77295 0.79723 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.49 71.98 0.68 -4.62 16 2 C 0.16 6.38 2.84 44.99 0.13 6.51 16 3 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16 4 C -0.12 -3.57 4.29 30.59 0.13 -3.44 16 5 C 0.14 4.99 2.52 44.99 0.11 5.11 16 6 H 0.05 2.35 7.05 -2.39 -0.02 2.34 16 7 C -0.15 -4.25 9.48 71.98 0.68 -3.56 16 8 N -0.69 -22.89 4.44 -445.41 -1.98 -24.86 16 9 C 0.58 22.12 7.77 86.78 0.67 22.79 16 10 O -0.58 -27.07 15.99 -3.91 -0.06 -27.13 16 11 C -0.07 -2.24 6.74 41.76 0.28 -1.96 16 12 C 0.16 5.10 10.76 84.95 0.91 6.01 16 13 N -0.53 -14.33 9.71 -191.75 -1.86 -16.20 16 14 C 0.36 7.76 7.37 133.32 0.98 8.74 16 15 N -0.59 -8.00 3.37 -753.50 -2.54 -10.54 16 16 C 0.08 0.33 10.04 127.77 1.28 1.61 16 17 C 0.09 1.08 10.19 127.77 1.30 2.38 16 18 C 0.01 0.12 10.34 85.13 0.88 1.00 16 19 N -0.38 -10.18 9.69 -183.80 -1.78 -11.97 16 20 N -0.73 -37.73 4.49 -322.95 -1.45 -39.18 16 21 C -0.23 -13.17 9.93 84.04 0.83 -12.33 16 22 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 23 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.97 -62.35 13.06 21.65 0.28 -62.06 16 25 Si 0.96 49.36 29.55 68.60 2.03 51.39 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 28 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 11.62 7.94 -92.71 -0.74 10.89 16 38 H 0.17 5.44 7.63 -2.91 -0.02 5.42 16 39 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.09 0.20 6.36 -2.39 -0.02 0.18 16 41 H 0.10 -0.01 7.92 -2.39 -0.02 -0.03 16 42 H 0.11 0.47 7.79 -2.38 -0.02 0.45 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.21 2.22 6.25 -2.91 -0.02 2.20 16 46 H 0.37 20.72 7.80 -92.71 -0.72 20.00 16 47 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.90 390.89 1.52 -80.38 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.47 Total: 36.14 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 9.36 Total: 24.03 kcal Atomic # 7 Polarization: -155.48 SS G_CDS: -9.33 Total: -164.81 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -81.90 1.52 -80.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134395366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds