Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48508 * 109.46872 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21568 * 120.00236 * 359.97438 * 18 17 2 20 20 C 1.47822 * 120.00287 * 180.02562 * 18 17 2 21 21 C 1.39451 * 120.00743 * 179.72615 * 20 18 17 22 22 N 1.32020 * 119.98097 * 179.75350 * 21 20 18 23 23 C 1.32787 * 119.99003 * 0.51495 * 22 21 20 24 24 N 1.38405 * 119.99454 * 179.71155 * 23 22 21 25 25 C 1.46505 * 120.00024 * 185.02538 * 24 23 22 26 26 C 1.46499 * 120.00305 * 5.02078 * 24 23 22 27 27 C 1.39852 * 120.00734 * 359.73769 * 23 22 21 28 28 N 1.31480 * 120.01774 * 359.97438 * 27 23 22 29 29 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 30 30 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 33 33 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 34 34 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 35 35 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 38 38 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 39 39 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 40 40 H 1.08000 * 120.00447 * 359.97438 * 21 20 18 41 41 H 1.08998 * 109.47079 * 89.99594 * 25 24 23 42 42 H 1.08997 * 109.46798 * 209.99834 * 25 24 23 43 43 H 1.08997 * 109.46548 * 330.00081 * 25 24 23 44 44 H 1.09005 * 109.46965 * 89.99607 * 26 24 23 45 45 H 1.08995 * 109.47641 * 209.99786 * 26 24 23 46 46 H 1.09003 * 109.46944 * 330.00505 * 26 24 23 47 47 H 1.08001 * 119.98391 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 8.1707 -0.0585 1.1840 15 1 7.5318 -0.7668 3.4139 16 1 8.5570 -2.3469 1.8866 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8584 1.1613 2.4117 20 6 2.6401 -0.7151 3.5640 21 6 2.7787 -0.0182 4.7639 22 7 3.2146 -0.6420 5.8427 23 6 3.5305 -1.9304 5.7822 24 7 3.9931 -2.5831 6.9116 25 6 4.4456 -3.9735 6.8204 26 6 4.0304 -1.8836 8.1983 27 6 3.3963 -2.6276 4.5774 28 7 2.9569 -2.0080 3.5042 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6055 -0.2618 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.6264 -0.6888 -3.4656 35 1 5.1509 -1.1487 -2.6696 36 1 3.7722 -2.2743 -2.6698 37 1 3.6646 -2.0586 0.2387 38 1 5.6745 -3.1228 2.6790 39 1 2.2489 -1.6319 1.1527 40 1 2.5262 1.0308 4.8115 41 1 5.5117 -3.9945 6.5942 42 1 4.2657 -4.4771 7.7702 43 1 3.8961 -4.4831 6.0290 44 1 3.0857 -2.0338 8.7210 45 1 4.8469 -2.2782 8.8030 46 1 4.1861 -0.8182 8.0283 47 1 3.6530 -3.6756 4.5288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134395367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = 45.012231 kcal Electronic energy + Delta-G solvation = -28787.377574 eV Core-core repulsion = 25006.539182 eV Total energy + Delta-G solvation = -3780.838393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62775 -38.94360 -36.91285 -36.39841 -34.08194 -33.58154 -32.06861 -30.89169 -29.87926 -28.40178 -28.37371 -26.28001 -25.86418 -23.66007 -23.54340 -22.65397 -20.99959 -20.10775 -19.60972 -17.54432 -17.31128 -17.03196 -16.75453 -15.60587 -15.41358 -14.77072 -14.64238 -14.43425 -14.26201 -14.01293 -13.73705 -13.54237 -13.32475 -12.83079 -12.73719 -12.59122 -12.55644 -12.28618 -12.05967 -11.99623 -11.78900 -11.66461 -11.57955 -10.97138 -10.87910 -10.80377 -10.67944 -10.59383 -10.28951 -10.16794 -9.80911 -9.71045 -9.58625 -9.48003 -8.85785 -8.44223 -8.24317 -7.40825 -6.80527 -5.64733 -2.90796 1.22686 1.81905 2.92750 3.43365 3.50166 3.50734 3.52539 3.91285 4.54016 4.65306 4.66067 4.83434 4.89090 5.13937 5.19142 5.24621 5.31129 5.48210 5.54432 5.58816 5.63626 5.66806 5.68255 5.70610 5.77479 5.86729 5.97677 6.03554 6.08268 6.09849 6.22826 6.32627 6.44026 6.48479 6.61171 6.65943 6.69894 6.85694 6.93850 7.13568 7.29204 7.34028 7.80843 7.93382 8.24623 8.48066 8.53400 9.01767 9.62331 10.18214 10.54045 11.53507 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.005486 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.239690 B = 5102.851030 C = 6655.234076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.046 0.954 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.231 4.231 10 H 0.063 0.937 11 C -0.005 4.005 12 N -0.903 5.903 13 Si 0.888 3.112 14 H -0.284 1.284 15 H -0.298 1.298 16 H -0.295 1.295 17 N -0.678 5.678 18 C 0.594 3.406 19 O -0.567 6.567 20 C -0.033 4.033 21 C 0.149 3.851 22 N -0.517 5.517 23 C 0.357 3.643 24 N -0.608 5.608 25 C 0.093 3.907 26 C 0.098 3.902 27 C 0.014 3.986 28 N -0.313 5.313 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.381 0.619 38 H 0.246 0.754 39 H 0.414 0.586 40 H 0.171 0.829 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -2.514 5.763 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.064 0.936 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.363 4.363 10 H 0.081 0.919 11 C -0.202 4.202 12 N -0.551 5.551 13 Si 0.720 3.280 14 H -0.209 1.209 15 H -0.226 1.226 16 H -0.222 1.222 17 N -0.329 5.329 18 C 0.380 3.620 19 O -0.447 6.447 20 C -0.173 4.173 21 C -0.012 4.012 22 N -0.239 5.239 23 C 0.118 3.882 24 N -0.322 5.322 25 C -0.050 4.050 26 C -0.045 4.045 27 C -0.158 4.158 28 N -0.028 5.028 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.216 0.784 38 H 0.056 0.944 39 H 0.254 0.746 40 H 0.188 0.812 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.593 -1.678 5.922 9.774 hybrid contribution 1.442 -0.474 0.574 1.623 sum -6.150 -2.152 6.495 9.201 Atomic orbital electron populations 1.22208 0.96307 1.01629 1.01877 1.20837 0.92490 0.97735 0.84640 0.89904 1.22205 0.97870 1.00615 0.96485 1.20267 0.89679 0.95829 0.88314 0.93614 1.22423 1.01444 1.00312 0.98122 1.42445 1.18641 1.40066 1.34615 1.19111 0.93321 1.13241 1.10601 0.91864 1.24558 0.97592 0.99052 0.98966 1.69700 1.36517 1.23963 1.24914 0.86407 0.85691 0.77439 0.78451 1.20897 1.22591 1.22230 1.45788 1.64246 1.14951 1.07930 1.17379 0.76552 0.85452 0.82622 1.90690 1.53124 1.15386 1.85461 1.21639 1.07614 0.92569 0.95512 1.23302 0.90448 1.00404 0.87057 1.67958 1.17733 1.07292 1.30934 1.19645 0.90617 0.89825 0.88096 1.46016 1.67431 1.12588 1.06175 1.21778 0.99994 0.80419 1.02855 1.21578 1.00531 0.98818 0.83619 1.23058 1.04459 1.01235 0.87094 1.68256 1.00879 1.07601 1.26081 0.92395 0.92176 0.92814 0.90898 0.91743 0.94716 0.92969 0.93656 0.78365 0.94359 0.74641 0.81221 0.92535 0.91036 0.90492 0.93477 0.91908 0.90244 0.81987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.15 2.49 2.58 -67.93 -0.17 2.31 16 3 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.13 -2.07 4.43 -26.73 -0.12 -2.19 16 5 C 0.17 3.23 2.89 -67.93 -0.20 3.04 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 8 N -0.71 -16.50 3.84 -53.42 -0.21 -16.71 16 9 C -0.23 -6.15 9.93 -15.06 -0.15 -6.30 16 10 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 11 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 12 N -0.90 -24.00 12.01 55.49 0.67 -23.33 16 13 Si 0.89 22.49 29.55 -169.99 -5.02 17.46 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 16 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 17 N -0.68 -13.05 3.79 -54.75 -0.21 -13.26 16 18 C 0.59 12.58 7.77 -12.34 -0.10 12.48 16 19 O -0.57 -12.75 15.99 5.31 0.08 -12.67 16 20 C -0.03 -0.68 6.74 -82.88 -0.56 -1.24 16 21 C 0.15 2.86 10.76 -17.02 -0.18 2.67 16 22 N -0.52 -9.45 9.22 -11.96 -0.11 -9.56 16 23 C 0.36 6.14 7.37 -155.00 -1.14 5.00 16 24 N -0.61 -8.27 3.37 -189.51 -0.64 -8.90 16 25 C 0.09 0.95 10.28 59.85 0.62 1.56 16 26 C 0.10 1.10 10.50 59.85 0.63 1.73 16 27 C 0.01 0.25 10.42 -17.10 -0.18 0.07 16 28 N -0.31 -6.37 8.64 -9.44 -0.08 -6.46 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.38 9.10 5.70 -40.82 -0.23 8.87 16 38 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.41 8.33 5.85 -40.82 -0.24 8.09 16 40 H 0.17 3.01 7.63 -52.49 -0.40 2.61 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.08 0.76 5.98 -51.93 -0.31 0.45 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.55 8.07 -51.93 -0.42 0.14 16 46 H 0.08 1.02 7.30 -51.93 -0.38 0.64 16 47 H 0.16 2.60 6.02 -52.49 -0.32 2.28 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -30.78 383.73 -7.98 -38.76 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.30 Total: 14.39 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -0.94 Total: 14.49 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -0.58 Total: -78.22 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.78 -7.98 -38.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134395367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.775 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds