Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48508 * 109.46872 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21568 * 120.00236 * 359.97438 * 18 17 2 20 20 C 1.47822 * 120.00287 * 180.02562 * 18 17 2 21 21 C 1.39451 * 120.00743 * 179.72615 * 20 18 17 22 22 N 1.32020 * 119.98097 * 179.75350 * 21 20 18 23 23 C 1.32787 * 119.99003 * 0.51495 * 22 21 20 24 24 N 1.38405 * 119.99454 * 179.71155 * 23 22 21 25 25 C 1.46505 * 120.00024 * 185.02538 * 24 23 22 26 26 C 1.46499 * 120.00305 * 5.02078 * 24 23 22 27 27 C 1.39852 * 120.00734 * 359.73769 * 23 22 21 28 28 N 1.31480 * 120.01774 * 359.97438 * 27 23 22 29 29 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 30 30 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 33 33 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 34 34 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 35 35 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 38 38 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 39 39 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 40 40 H 1.08000 * 120.00447 * 359.97438 * 21 20 18 41 41 H 1.08998 * 109.47079 * 89.99594 * 25 24 23 42 42 H 1.08997 * 109.46798 * 209.99834 * 25 24 23 43 43 H 1.08997 * 109.46548 * 330.00081 * 25 24 23 44 44 H 1.09005 * 109.46965 * 89.99607 * 26 24 23 45 45 H 1.08995 * 109.47641 * 209.99786 * 26 24 23 46 46 H 1.09003 * 109.46944 * 330.00505 * 26 24 23 47 47 H 1.08001 * 119.98391 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 8.1707 -0.0585 1.1840 15 1 7.5318 -0.7668 3.4139 16 1 8.5570 -2.3469 1.8866 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8584 1.1613 2.4117 20 6 2.6401 -0.7151 3.5640 21 6 2.7787 -0.0182 4.7639 22 7 3.2146 -0.6420 5.8427 23 6 3.5305 -1.9304 5.7822 24 7 3.9931 -2.5831 6.9116 25 6 4.4456 -3.9735 6.8204 26 6 4.0304 -1.8836 8.1983 27 6 3.3963 -2.6276 4.5774 28 7 2.9569 -2.0080 3.5042 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6055 -0.2618 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.6264 -0.6888 -3.4656 35 1 5.1509 -1.1487 -2.6696 36 1 3.7722 -2.2743 -2.6698 37 1 3.6646 -2.0586 0.2387 38 1 5.6745 -3.1228 2.6790 39 1 2.2489 -1.6319 1.1527 40 1 2.5262 1.0308 4.8115 41 1 5.5117 -3.9945 6.5942 42 1 4.2657 -4.4771 7.7702 43 1 3.8961 -4.4831 6.0290 44 1 3.0857 -2.0338 8.7210 45 1 4.8469 -2.2782 8.8030 46 1 4.1861 -0.8182 8.0283 47 1 3.6530 -3.6756 4.5288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134395367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = 25.561606 kcal Electronic energy + Delta-G solvation = -28788.221017 eV Core-core repulsion = 25006.539182 eV Total energy + Delta-G solvation = -3781.681835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02858 -40.43556 -38.31700 -37.72982 -35.72450 -35.00804 -33.84999 -32.36295 -31.29122 -30.10081 -29.30867 -27.57284 -27.10704 -25.47989 -25.03634 -23.91731 -22.35509 -21.61060 -21.14009 -19.03924 -18.97498 -18.55431 -18.07744 -17.09700 -16.60935 -16.55459 -16.05492 -15.87648 -15.57039 -15.43119 -15.32813 -15.18253 -14.66431 -14.30609 -14.12297 -14.06855 -13.54111 -13.42816 -13.28169 -13.24006 -13.16177 -12.92522 -12.86976 -12.77681 -12.59310 -12.31356 -12.23495 -12.11505 -12.03975 -11.68091 -11.53383 -11.36003 -11.07855 -10.98447 -10.81362 -9.88585 -9.77768 -8.70954 -8.62593 -7.70887 -4.93626 -0.21767 0.39025 1.37492 1.42488 1.46477 1.82326 1.96669 2.47082 2.61032 3.07749 3.37688 3.42954 3.56887 3.57750 3.86566 4.05092 4.17584 4.21217 4.23236 4.30067 4.43619 4.44684 4.49717 4.61484 4.64792 4.74627 4.76357 4.87835 4.91260 4.91748 4.92297 4.97195 5.11905 5.17660 5.19577 5.27519 5.41048 5.46702 5.66353 5.68639 5.77699 5.83858 6.10199 6.46204 6.56086 6.74357 7.04983 7.45160 7.55672 8.29275 8.56685 9.45679 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.005486 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.239690 B = 5102.851030 C = 6655.234076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.059 0.941 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.026 0.974 7 C -0.152 4.152 8 N -0.717 5.717 9 C -0.235 4.235 10 H 0.048 0.952 11 C -0.040 4.040 12 N -0.902 5.902 13 Si 0.926 3.074 14 H -0.287 1.287 15 H -0.314 1.314 16 H -0.293 1.293 17 N -0.673 5.673 18 C 0.586 3.414 19 O -0.593 6.593 20 C -0.065 4.065 21 C 0.147 3.853 22 N -0.526 5.526 23 C 0.358 3.642 24 N -0.601 5.601 25 C 0.084 3.916 26 C 0.092 3.908 27 C 0.005 3.995 28 N -0.330 5.330 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.377 0.623 38 H 0.243 0.757 39 H 0.410 0.590 40 H 0.175 0.825 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -3.881 5.815 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.077 0.923 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.361 5.361 9 C -0.368 4.368 10 H 0.066 0.934 11 C -0.237 4.237 12 N -0.551 5.551 13 Si 0.760 3.240 14 H -0.213 1.213 15 H -0.243 1.243 16 H -0.220 1.220 17 N -0.323 5.323 18 C 0.372 3.628 19 O -0.475 6.475 20 C -0.205 4.205 21 C -0.014 4.014 22 N -0.250 5.250 23 C 0.116 3.884 24 N -0.313 5.313 25 C -0.058 4.058 26 C -0.050 4.050 27 C -0.169 4.169 28 N -0.045 5.045 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.212 0.788 38 H 0.053 0.947 39 H 0.249 0.751 40 H 0.192 0.808 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.273 -3.058 5.954 10.642 hybrid contribution 1.708 -0.102 0.665 1.835 sum -6.565 -3.161 6.619 9.844 Atomic orbital electron populations 1.22103 0.93698 1.02628 1.02447 1.21030 0.94487 0.96356 0.84317 0.92325 1.22124 0.94935 1.01439 0.97228 1.20481 0.92122 0.94318 0.87790 0.95580 1.22262 0.99960 1.00788 0.98192 1.42466 1.17620 1.40231 1.35734 1.19138 0.94602 1.12561 1.10532 0.93422 1.24922 0.99176 0.99875 0.99678 1.69753 1.36534 1.23987 1.24796 0.85802 0.84276 0.76986 0.76934 1.21257 1.24250 1.22021 1.45855 1.63619 1.14628 1.08204 1.17610 0.76479 0.85323 0.83400 1.90649 1.54589 1.16302 1.85981 1.21617 1.09894 0.93132 0.95830 1.23398 0.90202 1.00710 0.87113 1.68031 1.18623 1.07923 1.30420 1.19908 0.89726 0.89554 0.89173 1.46462 1.65290 1.13724 1.05803 1.22072 0.99874 0.78719 1.05138 1.21773 1.02634 0.97772 0.82807 1.23408 1.04322 1.02031 0.87101 1.68170 1.01490 1.07598 1.27220 0.94138 0.89292 0.91533 0.87160 0.90737 0.91281 0.95391 0.93365 0.78829 0.94699 0.75112 0.80797 0.92543 0.87405 0.90144 0.91877 0.88855 0.92143 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.48 71.98 0.68 -3.26 16 2 C 0.14 4.69 2.58 44.99 0.12 4.80 16 3 H 0.06 2.22 7.58 -2.39 -0.02 2.21 16 4 C -0.12 -3.44 4.43 30.60 0.14 -3.30 16 5 C 0.16 6.05 2.89 44.99 0.13 6.18 16 6 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 7 C -0.15 -5.08 9.49 71.98 0.68 -4.39 16 8 N -0.72 -33.28 3.84 -322.93 -1.24 -34.52 16 9 C -0.24 -12.73 9.93 84.04 0.83 -11.89 16 10 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 11 C -0.04 -2.20 5.50 84.86 0.47 -1.74 16 12 N -0.90 -48.08 12.01 21.65 0.26 -47.82 16 13 Si 0.93 46.75 29.55 68.60 2.03 48.77 16 14 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 15 H -0.31 -16.53 7.11 99.48 0.71 -15.82 16 16 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 17 N -0.67 -26.28 3.79 -445.41 -1.69 -27.97 16 18 C 0.59 25.66 7.77 86.78 0.67 26.33 16 19 O -0.59 -27.79 15.99 -3.93 -0.06 -27.85 16 20 C -0.07 -2.79 6.74 41.76 0.28 -2.51 16 21 C 0.15 5.81 10.76 84.96 0.91 6.73 16 22 N -0.53 -19.40 9.22 -191.74 -1.77 -21.17 16 23 C 0.36 12.10 7.37 133.33 0.98 13.08 16 24 N -0.60 -15.12 3.37 -753.49 -2.54 -17.66 16 25 C 0.08 1.48 10.28 127.77 1.31 2.79 16 26 C 0.09 1.85 10.50 127.77 1.34 3.20 16 27 C 0.01 0.20 10.42 85.14 0.89 1.08 16 28 N -0.33 -13.65 8.64 -183.79 -1.59 -15.23 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.38 18.03 5.70 -92.71 -0.53 17.50 16 38 H 0.24 12.83 8.31 -92.70 -0.77 12.06 16 39 H 0.41 16.66 5.85 -92.71 -0.54 16.11 16 40 H 0.18 6.49 7.63 -2.91 -0.02 6.47 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.11 1.16 8.07 -2.39 -0.02 1.14 16 43 H 0.08 1.39 5.98 -2.39 -0.01 1.38 16 44 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.09 1.32 8.07 -2.39 -0.02 1.31 16 46 H 0.06 1.48 7.30 -2.39 -0.02 1.46 16 47 H 0.18 5.60 6.02 -2.91 -0.02 5.59 16 Total: -1.00 -68.17 383.73 2.75 -65.41 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -0.09 Total: 40.95 kcal Atomic # 6 Polarization: 27.64 SS G_CDS: 9.44 Total: 37.08 kcal Atomic # 7 Polarization: -155.81 SS G_CDS: -8.57 Total: -164.37 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -68.17 2.75 -65.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134395367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.973 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds