Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36596 * 126.57845 * 2 1 4 4 C 1.47523 * 125.76966 * 359.97438 * 3 2 1 5 5 O 1.21593 * 120.00173 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99662 * 180.02562 * 4 3 2 7 7 C 1.48146 * 127.83986 * 0.02562 * 6 4 3 8 8 C 1.54392 * 104.62026 * 140.41734 * 7 6 4 9 9 H 1.08992 * 110.43549 * 142.78251 * 8 7 6 10 10 C 1.52995 * 110.34092 * 264.99846 * 8 7 6 11 11 C 1.54290 * 104.95738 * 23.86560 * 8 7 6 12 12 C 1.52995 * 110.34298 * 241.02555 * 11 8 7 13 13 C 1.52992 * 110.34238 * 118.87205 * 11 8 7 14 14 N 1.46499 * 109.47267 * 180.02562 * 13 11 8 15 15 C 1.36935 * 119.99938 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47028 * 60.00888 * 19 17 15 21 21 H 1.48503 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47412 * 300.00497 * 19 17 15 23 23 C 1.48150 * 127.83647 * 180.02562 * 6 4 3 24 24 N 1.34400 * 108.45567 * 180.23981 * 3 2 1 25 25 N 1.28763 * 109.52433 * 359.58857 * 24 3 2 26 26 N 1.34817 * 126.58032 * 179.97438 * 2 1 3 27 27 C 1.46498 * 126.59502 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47138 * 90.00241 * 1 2 3 29 29 H 1.09004 * 109.47152 * 210.00114 * 1 2 3 30 30 H 1.09003 * 109.47581 * 330.00154 * 1 2 3 31 31 H 1.08999 * 110.40740 * 21.63044 * 7 6 4 32 32 H 1.08999 * 110.40914 * 259.19976 * 7 6 4 33 33 H 1.09000 * 109.47248 * 175.53249 * 10 8 7 34 34 H 1.08998 * 109.47323 * 295.53265 * 10 8 7 35 35 H 1.09005 * 109.47428 * 55.53483 * 10 8 7 36 36 H 1.09000 * 109.47035 * 298.52751 * 12 11 8 37 37 H 1.09000 * 109.47068 * 58.52622 * 12 11 8 38 38 H 1.09004 * 109.47243 * 178.52700 * 12 11 8 39 39 H 1.09004 * 109.47330 * 59.99913 * 13 11 8 40 40 H 1.09005 * 109.47124 * 300.00117 * 13 11 8 41 41 H 0.96999 * 119.99984 * 359.97438 * 14 13 11 42 42 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.40411 * 100.79819 * 23 6 4 44 44 H 1.08998 * 110.40803 * 338.37176 * 23 6 4 45 45 H 1.09001 * 109.47164 * 89.99954 * 27 26 2 46 46 H 1.09000 * 109.47063 * 210.00300 * 27 26 2 47 47 H 1.09002 * 109.47179 * 329.99611 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4987 -0.0010 7 6 4.2585 3.3822 -0.0016 8 6 4.7372 4.4993 -0.9538 9 1 5.6585 4.9474 -0.5819 10 6 4.9487 3.9424 -2.3630 11 6 3.5969 5.5386 -0.9534 12 6 3.0241 5.7003 -2.3628 13 6 4.1033 6.8835 -0.4287 14 7 3.0066 7.8549 -0.4358 15 6 3.2242 9.1364 -0.0052 16 1 4.2032 9.4300 0.3438 17 6 2.1852 10.0569 -0.0125 18 7 0.9908 9.6978 -0.4329 19 14 2.4819 11.8049 0.5756 20 1 3.5288 12.4391 -0.2653 21 1 1.2219 12.5836 0.4690 22 1 2.9306 11.7816 1.9909 23 6 2.5291 4.9586 -0.0010 24 7 3.5983 0.6789 -0.0053 25 7 3.6298 -0.6084 0.0001 26 7 2.3104 -1.0826 0.0005 27 6 1.8864 -2.4849 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 4.5625 2.4056 -0.3782 32 1 4.6529 3.5432 1.0017 33 1 5.2092 4.7560 -3.0399 34 1 5.7563 3.2105 -2.3470 35 1 4.0314 3.4639 -2.7062 36 1 3.8044 6.0610 -3.0330 37 1 2.6564 4.7377 -2.7182 38 1 2.2034 6.4173 -2.3415 39 1 4.9108 7.2420 -1.0672 40 1 4.4726 6.7606 0.5895 41 1 2.1264 7.5902 -0.7456 42 1 0.2647 10.3409 -0.4376 43 1 2.6534 5.3657 1.0024 44 1 1.5285 5.1712 -0.3772 45 1 1.7816 -2.8329 -1.0271 46 1 2.6329 -3.0902 0.5148 47 1 0.9292 -2.5750 0.5142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180973055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = 81.896162 kcal Electronic energy + Delta-G solvation = -28049.394383 eV Core-core repulsion = 24270.155397 eV Total energy + Delta-G solvation = -3779.238985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46436 -40.03130 -38.05616 -35.30010 -34.63164 -32.98737 -32.52584 -31.38908 -29.61697 -28.68785 -27.79430 -27.08448 -25.53008 -25.32145 -23.55068 -22.73986 -21.28696 -20.99609 -19.64928 -18.43678 -17.66589 -16.87297 -16.70554 -15.98329 -15.75040 -15.53264 -14.55148 -14.45553 -14.20937 -14.02765 -13.94624 -13.84291 -13.50080 -13.34510 -13.22378 -13.01488 -12.87007 -12.83339 -12.45029 -12.37205 -11.90611 -11.86543 -11.53938 -11.22969 -11.13714 -10.97624 -10.85955 -10.73904 -10.48038 -10.27560 -10.17996 -10.13931 -9.87070 -9.79737 -9.52515 -9.33289 -8.80982 -8.43666 -6.84867 -5.69685 -2.98001 0.89971 1.60790 1.75736 3.06477 3.32417 3.48706 3.52949 3.54026 3.97939 4.03417 4.31590 4.46509 4.52190 4.64126 4.77301 4.82667 4.89556 5.02790 5.10280 5.17958 5.35253 5.40337 5.54599 5.58221 5.64053 5.67158 5.69087 5.76275 5.92739 6.02234 6.08478 6.13947 6.15701 6.19979 6.24468 6.29567 6.37008 6.41430 6.54989 6.71118 6.79502 6.87482 6.97256 7.66858 7.75740 7.78181 8.26059 8.49205 9.60342 10.18570 10.53303 11.53068 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002922 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.751823 B = 9581.267257 C =10266.482410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.095 4.095 4 C 0.619 3.381 5 O -0.539 6.539 6 N -0.603 5.603 7 C 0.096 3.904 8 C -0.098 4.098 9 H 0.087 0.913 10 C -0.139 4.139 11 C -0.075 4.075 12 C -0.131 4.131 13 C 0.168 3.832 14 N -0.730 5.730 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.122 3.878 24 N -0.199 5.199 25 N -0.073 5.073 26 N -0.366 5.366 27 C 0.088 3.912 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.021 0.979 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -26.487 -0.962 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.234 4.234 4 C 0.406 3.594 5 O -0.416 6.416 6 N -0.334 5.334 7 C -0.027 4.027 8 C -0.117 4.117 9 H 0.105 0.895 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.188 4.188 13 C 0.040 3.960 14 N -0.375 5.375 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C 0.000 4.000 24 N -0.072 5.072 25 N -0.053 5.053 26 N -0.152 5.152 27 C -0.053 4.053 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.379 -26.725 -0.896 26.953 hybrid contribution -1.020 0.958 0.287 1.428 sum 2.359 -25.767 -0.610 25.882 Atomic orbital electron populations 1.20733 0.84583 1.05408 1.04724 1.21910 0.96259 0.86269 0.97199 1.21202 0.88872 0.95333 1.18027 1.16223 0.84627 0.81654 0.76902 1.90782 1.15382 1.83176 1.52304 1.48698 1.07225 1.06725 1.70799 1.22816 0.79117 1.01060 0.99679 1.22145 0.98649 0.95006 0.95936 0.89486 1.21878 1.01105 1.00546 0.96101 1.21709 0.94322 0.95464 0.96145 1.21849 1.01322 1.00859 0.94759 1.20714 0.91712 0.86637 0.96918 1.42401 1.08782 1.08050 1.78302 1.19170 0.95617 0.87194 1.34998 0.91314 1.24724 0.95713 0.98235 1.02280 1.69647 1.00859 1.34455 1.53168 0.86284 0.76615 0.84878 0.78494 1.21362 1.21775 1.21361 1.22529 1.00313 0.76934 1.00221 1.74568 1.19037 1.03727 1.09898 1.81988 0.96018 1.03753 1.23511 1.50244 1.06509 1.07694 1.50801 1.22151 1.02404 0.76117 1.04662 0.88951 0.90766 0.86799 0.87735 0.91281 0.92056 0.93149 0.92687 0.92479 0.93451 0.91537 0.95945 0.96165 0.78036 0.93499 0.90262 0.89530 0.89287 0.88113 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.57 36.00 0.34 -0.40 16 2 C 0.12 1.30 7.02 -81.88 -0.57 0.73 16 3 C -0.09 -1.32 6.87 -83.55 -0.57 -1.89 16 4 C 0.62 10.04 7.91 -12.48 -0.10 9.94 16 5 O -0.54 -9.79 14.98 5.28 0.08 -9.71 16 6 N -0.60 -9.56 3.32 -170.53 -0.57 -10.12 16 7 C 0.10 1.32 6.22 -2.41 -0.01 1.31 16 8 C -0.10 -1.33 3.31 -89.22 -0.30 -1.62 16 9 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 10 C -0.14 -1.72 7.92 37.15 0.29 -1.43 16 11 C -0.08 -1.25 0.73 -153.11 -0.11 -1.36 16 12 C -0.13 -2.20 7.07 37.16 0.26 -1.93 16 13 C 0.17 3.35 4.87 -4.05 -0.02 3.33 16 14 N -0.73 -18.34 5.13 -59.91 -0.31 -18.64 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 19 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.12 2.14 5.71 -2.41 -0.01 2.13 16 24 N -0.20 -2.76 9.36 32.85 0.31 -2.45 16 25 N -0.07 -0.91 13.78 60.35 0.83 -0.08 16 26 N -0.37 -3.39 4.03 -63.59 -0.26 -3.65 16 27 C 0.09 0.32 11.33 59.85 0.68 1.00 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.33 7.18 -51.93 -0.37 -0.04 16 30 H 0.11 1.15 6.43 -51.93 -0.33 0.82 16 31 H 0.10 1.40 5.16 -51.93 -0.27 1.14 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.75 6.84 -51.93 -0.36 0.39 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.73 6.76 -51.93 -0.35 0.38 16 36 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 37 H 0.05 0.75 6.71 -51.93 -0.35 0.40 16 38 H 0.07 1.29 6.78 -51.93 -0.35 0.94 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.38 10.19 6.19 -40.82 -0.25 9.94 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 1.47 7.83 -51.93 -0.41 1.07 16 44 H 0.09 1.70 7.60 -51.93 -0.39 1.30 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.10 0.13 7.16 -51.93 -0.37 -0.24 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -34.42 370.89 -6.06 -40.48 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.07 Total: 6.21 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.37 Total: 2.46 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.73 Total: -62.68 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.42 -6.06 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180973055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.379 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds