Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36596 * 126.57845 * 2 1 4 4 C 1.47523 * 125.76966 * 359.97438 * 3 2 1 5 5 O 1.21593 * 120.00173 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99662 * 180.02562 * 4 3 2 7 7 C 1.48146 * 127.83986 * 0.02562 * 6 4 3 8 8 C 1.54392 * 104.62026 * 140.41734 * 7 6 4 9 9 H 1.08992 * 110.43549 * 142.78251 * 8 7 6 10 10 C 1.52995 * 110.34092 * 264.99846 * 8 7 6 11 11 C 1.54290 * 104.95738 * 23.86560 * 8 7 6 12 12 C 1.52995 * 110.34298 * 241.02555 * 11 8 7 13 13 C 1.52992 * 110.34238 * 118.87205 * 11 8 7 14 14 N 1.46499 * 109.47267 * 180.02562 * 13 11 8 15 15 C 1.36935 * 119.99938 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47028 * 60.00888 * 19 17 15 21 21 H 1.48503 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47412 * 300.00497 * 19 17 15 23 23 C 1.48150 * 127.83647 * 180.02562 * 6 4 3 24 24 N 1.34400 * 108.45567 * 180.23981 * 3 2 1 25 25 N 1.28763 * 109.52433 * 359.58857 * 24 3 2 26 26 N 1.34817 * 126.58032 * 179.97438 * 2 1 3 27 27 C 1.46498 * 126.59502 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47138 * 90.00241 * 1 2 3 29 29 H 1.09004 * 109.47152 * 210.00114 * 1 2 3 30 30 H 1.09003 * 109.47581 * 330.00154 * 1 2 3 31 31 H 1.08999 * 110.40740 * 21.63044 * 7 6 4 32 32 H 1.08999 * 110.40914 * 259.19976 * 7 6 4 33 33 H 1.09000 * 109.47248 * 175.53249 * 10 8 7 34 34 H 1.08998 * 109.47323 * 295.53265 * 10 8 7 35 35 H 1.09005 * 109.47428 * 55.53483 * 10 8 7 36 36 H 1.09000 * 109.47035 * 298.52751 * 12 11 8 37 37 H 1.09000 * 109.47068 * 58.52622 * 12 11 8 38 38 H 1.09004 * 109.47243 * 178.52700 * 12 11 8 39 39 H 1.09004 * 109.47330 * 59.99913 * 13 11 8 40 40 H 1.09005 * 109.47124 * 300.00117 * 13 11 8 41 41 H 0.96999 * 119.99984 * 359.97438 * 14 13 11 42 42 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.40411 * 100.79819 * 23 6 4 44 44 H 1.08998 * 110.40803 * 338.37176 * 23 6 4 45 45 H 1.09001 * 109.47164 * 89.99954 * 27 26 2 46 46 H 1.09000 * 109.47063 * 210.00300 * 27 26 2 47 47 H 1.09002 * 109.47179 * 329.99611 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4987 -0.0010 7 6 4.2585 3.3822 -0.0016 8 6 4.7372 4.4993 -0.9538 9 1 5.6585 4.9474 -0.5819 10 6 4.9487 3.9424 -2.3630 11 6 3.5969 5.5386 -0.9534 12 6 3.0241 5.7003 -2.3628 13 6 4.1033 6.8835 -0.4287 14 7 3.0066 7.8549 -0.4358 15 6 3.2242 9.1364 -0.0052 16 1 4.2032 9.4300 0.3438 17 6 2.1852 10.0569 -0.0125 18 7 0.9908 9.6978 -0.4329 19 14 2.4819 11.8049 0.5756 20 1 3.5288 12.4391 -0.2653 21 1 1.2219 12.5836 0.4690 22 1 2.9306 11.7816 1.9909 23 6 2.5291 4.9586 -0.0010 24 7 3.5983 0.6789 -0.0053 25 7 3.6298 -0.6084 0.0001 26 7 2.3104 -1.0826 0.0005 27 6 1.8864 -2.4849 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 4.5625 2.4056 -0.3782 32 1 4.6529 3.5432 1.0017 33 1 5.2092 4.7560 -3.0399 34 1 5.7563 3.2105 -2.3470 35 1 4.0314 3.4639 -2.7062 36 1 3.8044 6.0610 -3.0330 37 1 2.6564 4.7377 -2.7182 38 1 2.2034 6.4173 -2.3415 39 1 4.9108 7.2420 -1.0672 40 1 4.4726 6.7606 0.5895 41 1 2.1264 7.5902 -0.7456 42 1 0.2647 10.3409 -0.4376 43 1 2.6534 5.3657 1.0024 44 1 1.5285 5.1712 -0.3772 45 1 1.7816 -2.8329 -1.0271 46 1 2.6329 -3.0902 0.5148 47 1 0.9292 -2.5750 0.5142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180973055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = 57.950611 kcal Electronic energy + Delta-G solvation = -28050.432740 eV Core-core repulsion = 24270.155397 eV Total energy + Delta-G solvation = -3780.277342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33858 -41.31497 -39.36311 -36.54307 -35.90562 -34.49982 -33.32185 -33.04664 -31.23288 -29.61972 -28.40660 -28.31131 -27.07237 -26.61098 -25.17854 -24.01997 -22.35140 -22.06542 -20.75953 -19.83349 -19.22786 -18.29557 -17.57769 -17.09370 -17.00044 -16.58728 -16.41332 -15.66669 -15.41961 -15.34604 -15.16760 -14.76198 -14.70330 -14.54078 -14.21750 -14.07811 -14.01138 -13.81394 -13.65467 -13.24520 -13.15160 -13.08939 -12.95996 -12.73335 -12.57838 -12.49192 -12.41458 -12.15410 -11.99152 -11.89885 -11.47597 -11.35358 -11.18579 -11.18182 -11.06023 -10.88523 -10.28644 -9.70167 -8.94117 -7.90219 -5.18407 0.08351 0.56320 1.10327 1.48724 1.51977 1.57886 1.87441 2.15945 2.59140 3.07955 3.33267 3.42874 3.55614 3.59997 3.60225 3.73785 3.83227 4.16797 4.27456 4.30671 4.32116 4.35640 4.36557 4.52314 4.57099 4.62208 4.66168 4.71328 4.75480 4.81540 4.85587 4.87778 4.91386 5.03055 5.06332 5.08751 5.15062 5.21867 5.25853 5.38384 5.45340 5.50543 5.54051 5.60408 6.31387 6.47938 6.78877 7.06019 7.38085 8.14953 8.37940 9.33282 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002922 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.751823 B = 9581.267257 C =10266.482410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.126 4.126 4 C 0.614 3.386 5 O -0.569 6.569 6 N -0.605 5.605 7 C 0.100 3.900 8 C -0.089 4.089 9 H 0.104 0.896 10 C -0.134 4.134 11 C -0.066 4.066 12 C -0.121 4.121 13 C 0.168 3.832 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.279 1.279 23 C 0.128 3.872 24 N -0.215 5.215 25 N -0.089 5.089 26 N -0.351 5.351 27 C 0.072 3.928 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -28.803 -0.950 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.266 4.266 4 C 0.403 3.597 5 O -0.449 6.449 6 N -0.336 5.336 7 C -0.022 4.022 8 C -0.109 4.109 9 H 0.122 0.878 10 C -0.191 4.191 11 C -0.067 4.067 12 C -0.178 4.178 13 C 0.042 3.958 14 N -0.385 5.385 15 C -0.373 4.373 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.802 3.198 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.205 1.205 23 C 0.005 3.995 24 N -0.088 5.088 25 N -0.069 5.069 26 N -0.137 5.137 27 C -0.066 4.066 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.785 -29.099 -0.880 29.503 hybrid contribution -1.445 1.497 0.298 2.102 sum 3.339 -27.602 -0.582 27.809 Atomic orbital electron populations 1.20815 0.82537 1.06160 1.05626 1.22243 0.97327 0.85824 0.95350 1.21011 0.89915 0.94665 1.21001 1.16635 0.84277 0.82721 0.76112 1.90756 1.16572 1.83903 1.53648 1.48745 1.08300 1.05728 1.70841 1.22915 0.77633 1.01479 1.00176 1.22151 0.97794 0.93845 0.97101 0.87777 1.21833 1.01327 1.01035 0.94918 1.21576 0.95186 0.94643 0.95339 1.21746 1.00466 1.00366 0.95226 1.20862 0.90467 0.87149 0.97341 1.42607 1.09639 1.08273 1.78017 1.19610 0.95769 0.88329 1.33597 0.90496 1.25553 0.95625 1.02322 1.03434 1.69823 1.01685 1.35488 1.55169 0.85221 0.76239 0.80059 0.78292 1.20315 1.22449 1.20505 1.22255 0.99176 0.78654 0.99424 1.74494 1.19191 1.04512 1.10599 1.81876 0.97858 1.03206 1.23942 1.50572 1.05169 1.09253 1.48708 1.22735 1.04192 0.73035 1.06670 0.87809 0.86617 0.89363 0.86912 0.90603 0.91669 0.91063 0.93809 0.91325 0.92566 0.94886 0.95163 0.95733 0.79282 0.94159 0.91775 0.92461 0.87265 0.86882 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.57 71.24 0.68 -0.59 16 2 C 0.13 2.63 7.02 41.72 0.29 2.92 16 3 C -0.13 -3.47 6.87 40.82 0.28 -3.19 16 4 C 0.61 20.49 7.91 86.69 0.69 21.17 16 5 O -0.57 -21.66 14.98 -4.01 -0.06 -21.72 16 6 N -0.61 -19.63 3.32 -811.70 -2.69 -22.32 16 7 C 0.10 2.67 6.22 86.54 0.54 3.21 16 8 C -0.09 -2.31 3.31 -9.89 -0.03 -2.34 16 9 H 0.10 2.39 7.71 -2.39 -0.02 2.37 16 10 C -0.13 -3.05 7.92 71.98 0.57 -2.48 16 11 C -0.07 -2.21 0.73 -51.28 -0.04 -2.25 16 12 C -0.12 -4.13 7.07 71.98 0.51 -3.63 16 13 C 0.17 6.71 4.87 86.38 0.42 7.13 16 14 N -0.74 -38.12 5.13 -343.45 -1.76 -39.89 16 15 C -0.24 -13.62 9.99 84.04 0.84 -12.78 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 18 N -0.97 -61.02 13.06 21.65 0.28 -60.73 16 19 Si 0.97 47.10 29.55 68.60 2.03 49.12 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 C 0.13 4.70 5.71 86.53 0.49 5.20 16 24 N -0.22 -5.77 9.36 -49.99 -0.47 -6.24 16 25 N -0.09 -2.07 13.78 37.02 0.51 -1.56 16 26 N -0.35 -5.62 4.03 -355.10 -1.43 -7.05 16 27 C 0.07 0.25 11.33 127.77 1.45 1.70 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.12 0.58 7.18 -2.38 -0.02 0.56 16 30 H 0.09 1.77 6.43 -2.39 -0.02 1.75 16 31 H 0.11 2.90 5.16 -2.39 -0.01 2.89 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.44 6.84 -2.39 -0.02 1.43 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.10 6.76 -2.38 -0.02 1.08 16 36 H 0.07 2.16 6.89 -2.39 -0.02 2.14 16 37 H 0.06 1.80 6.71 -2.39 -0.02 1.78 16 38 H 0.03 1.34 6.78 -2.38 -0.02 1.32 16 39 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.02 0.98 8.10 -2.38 -0.02 0.96 16 41 H 0.37 20.74 6.19 -92.71 -0.57 20.17 16 42 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.06 2.52 7.83 -2.39 -0.02 2.50 16 44 H 0.06 2.42 7.60 -2.39 -0.02 2.41 16 45 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.13 -0.28 7.16 -2.39 -0.02 -0.29 16 Total: -1.00 -77.26 370.89 3.98 -73.27 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.42 Total: 27.11 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 7.16 Total: 10.00 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -5.56 Total: -137.79 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.26 3.98 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180973055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.225 kcal (2) G-P(sol) polarization free energy of solvation -77.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds