Wall clock time and date at job start Fri Apr 10 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 C 1.50697 * 109.46933 * 120.00261 * 2 1 3 5 5 O 1.21286 * 120.00197 * 340.22092 * 4 2 1 6 6 N 1.34778 * 120.00073 * 160.22305 * 4 2 1 7 7 C 1.46924 * 120.62923 * 355.74301 * 6 4 2 8 8 C 1.53190 * 108.78130 * 233.62956 * 7 6 4 9 9 C 1.53039 * 109.31271 * 305.37078 * 8 7 6 10 10 C 1.53355 * 109.60657 * 61.37138 * 9 8 7 11 11 H 1.08996 * 109.47589 * 58.54978 * 10 9 8 12 12 N 1.46502 * 109.68238 * 178.74854 * 10 9 8 13 13 C 1.35311 * 125.86813 * 34.74655 * 12 10 9 14 14 C 1.35353 * 106.17136 * 180.02562 * 13 12 10 15 15 C 1.50704 * 126.74579 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47307 * 95.00604 * 15 14 13 17 17 C 1.36935 * 120.00160 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.38822 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31610 * 119.99558 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00061 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47347 * 59.99605 * 21 19 17 23 23 H 1.48493 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47027 * 299.99937 * 21 19 17 25 25 N 1.33765 * 106.49953 * 0.02562 * 14 13 12 26 26 N 1.28637 * 108.88378 * 359.73276 * 25 14 13 27 27 C 1.46924 * 120.63184 * 175.77302 * 6 4 2 28 28 H 1.09002 * 109.47222 * 300.00253 * 1 2 3 29 29 H 1.09008 * 109.46676 * 59.99584 * 1 2 3 30 30 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46912 * 240.00185 * 2 1 3 32 32 H 1.09001 * 109.47574 * 302.63378 * 3 2 1 33 33 H 1.09010 * 109.46827 * 62.62967 * 3 2 1 34 34 H 1.08998 * 109.47193 * 182.62603 * 3 2 1 35 35 H 1.09006 * 109.58663 * 353.42524 * 7 6 4 36 36 H 1.09007 * 109.58586 * 113.84406 * 7 6 4 37 37 H 1.09010 * 109.49353 * 65.31912 * 8 7 6 38 38 H 1.08996 * 109.50240 * 185.41254 * 8 7 6 39 39 H 1.09003 * 109.45714 * 181.37716 * 9 8 7 40 40 H 1.08998 * 109.45820 * 301.33929 * 9 8 7 41 41 H 1.07994 * 126.91535 * 0.02562 * 13 12 10 42 42 H 1.09008 * 109.46951 * 214.99708 * 15 14 13 43 43 H 1.08997 * 109.47484 * 334.99507 * 15 14 13 44 44 H 0.97003 * 120.00066 * 359.97438 * 16 15 14 45 45 H 0.97006 * 119.99776 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.58441 * 246.15389 * 27 6 4 47 47 H 1.09005 * 109.58570 * 6.43623 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3026 -0.8533 2.1886 6 7 3.2925 -1.1871 1.2661 7 6 4.1578 -1.1047 0.0816 8 6 4.6979 -2.5033 -0.2328 9 6 5.3865 -3.0713 1.0103 10 6 4.3697 -3.1916 2.1520 11 1 3.5482 -3.8368 1.8406 12 7 5.0201 -3.7630 3.3338 13 6 6.3004 -3.5485 3.7158 14 6 6.4801 -4.2639 4.8506 15 6 7.7428 -4.3556 5.6682 16 7 7.6918 -3.3768 6.7569 17 6 8.7367 -3.2756 7.6362 18 1 9.5982 -3.9177 7.5273 19 6 8.6886 -2.3477 8.6676 20 7 7.6390 -1.5649 8.8000 21 14 10.1137 -2.2102 9.8674 22 1 11.3522 -1.8597 9.1270 23 1 9.8184 -1.1531 10.8676 24 1 10.3030 -3.5091 10.5620 25 7 5.3166 -4.8734 5.1038 26 7 4.4707 -4.5520 4.1895 27 6 3.8268 -1.7996 2.4901 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6387 1.9698 -0.8654 33 1 1.7157 1.9425 0.9127 34 1 3.1290 1.4428 -0.0471 35 1 3.5815 -0.7362 -0.7670 36 1 4.9890 -0.4287 0.2826 37 1 3.8734 -3.1552 -0.5219 38 1 5.4164 -2.4407 -1.0501 39 1 5.7931 -4.0565 0.7820 40 1 6.1951 -2.4061 1.3134 41 1 7.0316 -2.9308 3.2158 42 1 7.8334 -5.3586 6.0854 43 1 8.6033 -4.1475 5.0324 44 1 6.9182 -2.7998 6.8546 45 1 7.6055 -0.9162 9.5204 46 1 4.6309 -1.1803 2.8875 47 1 3.0325 -1.8873 3.2315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185873837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:13 Heat of formation + Delta-G solvation = 73.677453 kcal Electronic energy + Delta-G solvation = -27253.381676 eV Core-core repulsion = 23473.786301 eV Total energy + Delta-G solvation = -3779.595375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.01206 -40.79883 -38.19335 -35.33905 -34.90478 -34.21536 -32.73877 -31.81086 -30.29997 -29.85462 -27.60555 -26.40935 -25.86524 -24.68995 -23.20769 -22.79773 -22.14945 -20.67607 -20.47533 -19.13992 -17.98851 -17.39219 -16.85382 -16.61203 -16.00153 -15.58064 -14.99544 -14.86212 -14.63575 -14.54210 -14.44339 -14.13753 -13.66615 -13.57165 -13.40607 -13.13303 -12.98650 -12.69601 -12.62541 -12.42403 -12.22583 -11.90060 -11.86627 -11.70721 -11.56149 -11.32143 -11.29348 -11.18265 -10.86120 -10.77079 -10.40503 -10.12010 -10.06856 -9.90413 -9.70273 -9.14308 -8.85276 -8.79436 -6.88859 -5.70723 -3.00489 1.80435 2.14948 2.25321 2.72106 2.95210 3.48048 3.52428 3.53808 3.86637 3.99270 4.16862 4.19359 4.32172 4.39457 4.53072 4.60252 4.63684 4.68103 4.73877 4.86280 4.99258 5.11853 5.14356 5.17775 5.21029 5.27249 5.31641 5.36254 5.40148 5.45124 5.49858 5.55116 5.61078 5.66597 5.70707 5.83056 5.90042 5.94593 6.20754 6.43585 6.68280 6.78200 6.83141 6.90513 7.73205 7.77627 8.46365 8.88033 9.57950 10.14055 10.50001 11.51927 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.002612 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.357258 B =10718.141733 C =11396.894913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.519 3.481 5 O -0.529 6.529 6 N -0.611 5.611 7 C 0.099 3.901 8 C -0.130 4.130 9 C -0.131 4.131 10 C 0.138 3.862 11 H 0.113 0.887 12 N -0.295 5.295 13 C -0.044 4.044 14 C -0.004 4.004 15 C 0.233 3.767 16 N -0.726 5.726 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.285 1.285 25 N -0.253 5.253 26 N -0.093 5.093 27 C 0.102 3.898 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.186 0.814 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.081 0.919 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 3.853 -28.878 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.307 3.693 5 O -0.404 6.404 6 N -0.346 5.346 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.170 4.170 10 C 0.034 3.966 11 H 0.131 0.869 12 N -0.089 5.089 13 C -0.194 4.194 14 C -0.142 4.142 15 C 0.104 3.896 16 N -0.370 5.370 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 N -0.120 5.120 26 N -0.072 5.072 27 C -0.022 4.022 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.203 0.797 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.688 3.004 -27.865 29.995 hybrid contribution 1.534 0.912 0.343 1.817 sum -9.155 3.916 -27.522 29.268 Atomic orbital electron populations 1.21667 0.92264 1.02785 1.02658 1.21339 0.98468 0.97518 0.96112 1.21780 1.01379 0.93687 1.03311 1.20828 0.80524 0.78189 0.89711 1.90746 1.55089 1.56971 1.37587 1.48033 1.13419 1.60166 1.12950 1.21963 0.94900 0.97615 0.87915 1.21907 1.01194 0.96335 0.97418 1.21997 0.97804 1.03516 0.93654 1.21887 0.96714 0.95773 0.82181 0.86899 1.47232 1.09176 1.32696 1.19782 1.23298 0.88368 1.07041 1.00697 1.22476 0.97088 0.98711 0.95922 1.18940 0.87404 0.94720 0.88548 1.42300 1.22253 1.41809 1.30687 1.19183 0.96744 1.15694 1.05530 0.90949 1.24765 0.97893 0.98988 0.99283 1.69674 1.29189 1.25038 1.34104 0.86233 0.81637 0.77222 0.80867 1.21263 1.21747 1.21185 1.75110 0.99817 1.20390 1.16680 1.78314 1.22072 1.08669 0.98102 1.21882 1.00956 0.91404 0.87965 0.91361 0.91795 0.92228 0.88762 0.91108 0.91739 0.91981 0.88730 0.90465 0.90736 0.89095 0.89886 0.89869 0.79653 0.94356 0.94538 0.78094 0.93458 0.90034 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.66 37.16 0.32 -0.60 16 2 C -0.11 -0.71 2.41 -91.77 -0.22 -0.93 16 3 C -0.14 -0.75 9.05 37.16 0.34 -0.41 16 4 C 0.52 5.26 6.85 -10.99 -0.08 5.19 16 5 O -0.53 -7.88 15.45 5.55 0.09 -7.79 16 6 N -0.61 -5.14 2.97 -172.76 -0.51 -5.65 16 7 C 0.10 0.43 5.71 -3.71 -0.02 0.41 16 8 C -0.13 -0.50 6.08 -26.61 -0.16 -0.66 16 9 C -0.13 -0.84 4.79 -26.53 -0.13 -0.97 16 10 C 0.14 1.40 3.29 -67.65 -0.22 1.18 16 11 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 12 N -0.29 -4.29 3.26 -54.49 -0.18 -4.47 16 13 C -0.04 -0.67 10.63 -17.05 -0.18 -0.85 16 14 C 0.00 -0.08 6.62 -82.78 -0.55 -0.63 16 15 C 0.23 4.98 6.82 -5.20 -0.04 4.95 16 16 N -0.73 -19.31 5.59 -61.08 -0.34 -19.65 16 17 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 21 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 N -0.25 -5.35 12.41 33.29 0.41 -4.93 16 26 N -0.09 -1.74 13.16 60.35 0.79 -0.94 16 27 C 0.10 1.11 6.04 -3.71 -0.02 1.09 16 28 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.36 6.36 -51.93 -0.33 0.03 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.06 0.27 7.44 -51.93 -0.39 -0.11 16 35 H 0.09 0.23 5.30 -51.93 -0.28 -0.05 16 36 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.50 7.26 -51.93 -0.38 0.12 16 41 H 0.19 2.16 7.35 -52.49 -0.39 1.78 16 42 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.39 11.11 7.66 -40.82 -0.31 10.79 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.11 1.51 7.00 -51.93 -0.36 1.15 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -37.18 379.34 -6.99 -44.17 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.46 Total: 3.97 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.20 Total: 0.25 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: 0.90 Total: -64.05 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.18 -6.99 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185873837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.849 kcal (2) G-P(sol) polarization free energy of solvation -37.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds