Wall clock time and date at job start Fri Apr 10 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 C 1.50697 * 109.46933 * 120.00261 * 2 1 3 5 5 O 1.21286 * 120.00197 * 340.22092 * 4 2 1 6 6 N 1.34778 * 120.00073 * 160.22305 * 4 2 1 7 7 C 1.46924 * 120.62923 * 355.74301 * 6 4 2 8 8 C 1.53190 * 108.78130 * 233.62956 * 7 6 4 9 9 C 1.53039 * 109.31271 * 305.37078 * 8 7 6 10 10 C 1.53355 * 109.60657 * 61.37138 * 9 8 7 11 11 H 1.08996 * 109.47589 * 58.54978 * 10 9 8 12 12 N 1.46502 * 109.68238 * 178.74854 * 10 9 8 13 13 C 1.35311 * 125.86813 * 34.74655 * 12 10 9 14 14 C 1.35353 * 106.17136 * 180.02562 * 13 12 10 15 15 C 1.50704 * 126.74579 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47307 * 95.00604 * 15 14 13 17 17 C 1.36935 * 120.00160 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.38822 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31610 * 119.99558 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00061 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47347 * 59.99605 * 21 19 17 23 23 H 1.48493 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47027 * 299.99937 * 21 19 17 25 25 N 1.33765 * 106.49953 * 0.02562 * 14 13 12 26 26 N 1.28637 * 108.88378 * 359.73276 * 25 14 13 27 27 C 1.46924 * 120.63184 * 175.77302 * 6 4 2 28 28 H 1.09002 * 109.47222 * 300.00253 * 1 2 3 29 29 H 1.09008 * 109.46676 * 59.99584 * 1 2 3 30 30 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46912 * 240.00185 * 2 1 3 32 32 H 1.09001 * 109.47574 * 302.63378 * 3 2 1 33 33 H 1.09010 * 109.46827 * 62.62967 * 3 2 1 34 34 H 1.08998 * 109.47193 * 182.62603 * 3 2 1 35 35 H 1.09006 * 109.58663 * 353.42524 * 7 6 4 36 36 H 1.09007 * 109.58586 * 113.84406 * 7 6 4 37 37 H 1.09010 * 109.49353 * 65.31912 * 8 7 6 38 38 H 1.08996 * 109.50240 * 185.41254 * 8 7 6 39 39 H 1.09003 * 109.45714 * 181.37716 * 9 8 7 40 40 H 1.08998 * 109.45820 * 301.33929 * 9 8 7 41 41 H 1.07994 * 126.91535 * 0.02562 * 13 12 10 42 42 H 1.09008 * 109.46951 * 214.99708 * 15 14 13 43 43 H 1.08997 * 109.47484 * 334.99507 * 15 14 13 44 44 H 0.97003 * 120.00066 * 359.97438 * 16 15 14 45 45 H 0.97006 * 119.99776 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.58441 * 246.15389 * 27 6 4 47 47 H 1.09005 * 109.58570 * 6.43623 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3026 -0.8533 2.1886 6 7 3.2925 -1.1871 1.2661 7 6 4.1578 -1.1047 0.0816 8 6 4.6979 -2.5033 -0.2328 9 6 5.3865 -3.0713 1.0103 10 6 4.3697 -3.1916 2.1520 11 1 3.5482 -3.8368 1.8406 12 7 5.0201 -3.7630 3.3338 13 6 6.3004 -3.5485 3.7158 14 6 6.4801 -4.2639 4.8506 15 6 7.7428 -4.3556 5.6682 16 7 7.6918 -3.3768 6.7569 17 6 8.7367 -3.2756 7.6362 18 1 9.5982 -3.9177 7.5273 19 6 8.6886 -2.3477 8.6676 20 7 7.6390 -1.5649 8.8000 21 14 10.1137 -2.2102 9.8674 22 1 11.3522 -1.8597 9.1270 23 1 9.8184 -1.1531 10.8676 24 1 10.3030 -3.5091 10.5620 25 7 5.3166 -4.8734 5.1038 26 7 4.4707 -4.5520 4.1895 27 6 3.8268 -1.7996 2.4901 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6387 1.9698 -0.8654 33 1 1.7157 1.9425 0.9127 34 1 3.1290 1.4428 -0.0471 35 1 3.5815 -0.7362 -0.7670 36 1 4.9890 -0.4287 0.2826 37 1 3.8734 -3.1552 -0.5219 38 1 5.4164 -2.4407 -1.0501 39 1 5.7931 -4.0565 0.7820 40 1 6.1951 -2.4061 1.3134 41 1 7.0316 -2.9308 3.2158 42 1 7.8334 -5.3586 6.0854 43 1 8.6033 -4.1475 5.0324 44 1 6.9182 -2.7998 6.8546 45 1 7.6055 -0.9162 9.5204 46 1 4.6309 -1.1803 2.8875 47 1 3.0325 -1.8873 3.2315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185873837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:13 Heat of formation + Delta-G solvation = 46.472967 kcal Electronic energy + Delta-G solvation = -27254.561351 eV Core-core repulsion = 23473.786301 eV Total energy + Delta-G solvation = -3780.775050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.34470 -41.53565 -38.97629 -36.86247 -35.93861 -35.21073 -33.82535 -33.23284 -31.64324 -31.22603 -28.07666 -27.70721 -27.02697 -25.57497 -24.79647 -23.77751 -23.12148 -22.08678 -21.34875 -19.79879 -19.34457 -18.68359 -18.02552 -17.63266 -16.85945 -16.68280 -16.34645 -16.00134 -15.63402 -15.53564 -15.38706 -15.10020 -15.03853 -14.68375 -14.35433 -14.20254 -14.01005 -13.67935 -13.56005 -13.22301 -13.09122 -12.93998 -12.76960 -12.70712 -12.60432 -12.42489 -12.22703 -12.13134 -12.05328 -11.94949 -11.86730 -11.80364 -11.70985 -11.20090 -10.94744 -10.78852 -10.26559 -9.84945 -9.02729 -7.93162 -5.24056 0.54481 1.17196 1.43077 1.49482 1.50480 1.53924 1.59925 1.94255 2.59637 3.11877 3.28672 3.38085 3.46260 3.54308 3.66984 3.85581 3.89417 3.95064 3.97778 4.04616 4.12680 4.18828 4.23254 4.38232 4.43419 4.51215 4.57600 4.64486 4.73823 4.75757 4.85473 4.86218 4.88923 4.94272 4.98751 5.03805 5.11422 5.16796 5.23996 5.27613 5.30838 5.34580 5.50673 5.64801 6.24598 6.25785 7.03772 7.32435 7.48074 8.03871 8.29862 9.30671 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.002612 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.357258 B =10718.141733 C =11396.894913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.508 3.492 5 O -0.592 6.592 6 N -0.604 5.604 7 C 0.090 3.910 8 C -0.121 4.121 9 C -0.126 4.126 10 C 0.135 3.865 11 H 0.109 0.891 12 N -0.279 5.279 13 C -0.013 4.013 14 C -0.037 4.037 15 C 0.236 3.764 16 N -0.740 5.740 17 C -0.244 4.244 18 H 0.086 0.914 19 C -0.080 4.080 20 N -0.975 5.975 21 Si 0.981 3.019 22 H -0.269 1.269 23 H -0.299 1.299 24 H -0.279 1.279 25 N -0.298 5.298 26 N -0.120 5.120 27 C 0.107 3.893 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.230 0.770 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.369 0.631 45 H 0.250 0.750 46 H 0.080 0.920 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 4.606 -32.919 33.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.199 4.199 4 C 0.299 3.701 5 O -0.471 6.471 6 N -0.337 5.337 7 C -0.031 4.031 8 C -0.160 4.160 9 C -0.164 4.164 10 C 0.033 3.967 11 H 0.127 0.873 12 N -0.073 5.073 13 C -0.164 4.164 14 C -0.176 4.176 15 C 0.109 3.891 16 N -0.383 5.383 17 C -0.375 4.375 18 H 0.104 0.896 19 C -0.271 4.271 20 N -0.625 5.625 21 Si 0.809 3.191 22 H -0.195 1.195 23 H -0.225 1.225 24 H -0.205 1.205 25 N -0.164 5.164 26 N -0.098 5.098 27 C -0.019 4.019 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.144 0.856 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.246 0.754 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.200 0.800 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.427 3.713 -31.988 33.287 hybrid contribution 0.779 0.663 1.475 1.795 sum -7.648 4.376 -30.512 31.759 Atomic orbital electron populations 1.21688 0.93026 1.02093 1.02684 1.21428 0.97826 0.98122 0.95164 1.21803 1.02353 0.92603 1.03136 1.21730 0.80480 0.77655 0.90243 1.90722 1.56921 1.59426 1.40070 1.48177 1.13487 1.58860 1.13227 1.22398 0.95150 0.98700 0.86829 1.21943 1.01819 0.95450 0.96775 1.22098 0.96994 1.04528 0.92793 1.22306 0.98029 0.94633 0.81754 0.87296 1.47600 1.09019 1.30990 1.19722 1.23756 0.88811 1.04956 0.98922 1.22365 0.96410 1.01066 0.97762 1.18986 0.89570 0.92782 0.87801 1.42526 1.21220 1.42546 1.31975 1.19681 0.97310 1.15031 1.05476 0.89574 1.25683 1.00721 0.99199 1.01548 1.69864 1.31605 1.26154 1.34914 0.85105 0.78790 0.76940 0.78266 1.19474 1.22535 1.20513 1.75033 1.00896 1.22215 1.18295 1.78218 1.22260 1.10431 0.98914 1.21603 0.99361 0.92226 0.88673 0.94117 0.88895 0.93344 0.84955 0.88628 0.94318 0.90544 0.85822 0.88880 0.90660 0.85630 0.89282 0.88600 0.75406 0.95374 0.91494 0.79992 0.94127 0.90139 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.66 71.98 0.62 -1.14 16 2 C -0.10 -1.09 2.41 -11.54 -0.03 -1.12 16 3 C -0.14 -1.10 9.05 71.98 0.65 -0.45 16 4 C 0.51 10.26 6.85 87.66 0.60 10.86 16 5 O -0.59 -19.08 15.45 -3.05 -0.05 -19.13 16 6 N -0.60 -9.34 2.97 -818.89 -2.43 -11.78 16 7 C 0.09 0.40 5.71 86.36 0.49 0.89 16 8 C -0.12 -0.35 6.08 30.67 0.19 -0.17 16 9 C -0.13 -1.14 4.79 30.73 0.15 -0.99 16 10 C 0.13 2.59 3.29 45.17 0.15 2.74 16 11 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 12 N -0.28 -8.04 3.26 -326.30 -1.06 -9.10 16 13 C -0.01 -0.37 10.63 83.49 0.89 0.52 16 14 C -0.04 -1.46 6.62 41.60 0.28 -1.18 16 15 C 0.24 10.04 6.82 85.64 0.58 10.63 16 16 N -0.74 -39.83 5.59 -347.17 -1.94 -41.77 16 17 C -0.24 -13.90 9.99 84.04 0.84 -13.06 16 18 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 19 C -0.08 -4.71 5.50 84.87 0.47 -4.25 16 20 N -0.97 -62.37 13.06 21.65 0.28 -62.09 16 21 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 N -0.30 -13.06 12.41 -48.60 -0.60 -13.67 16 26 N -0.12 -4.64 13.16 37.02 0.49 -4.15 16 27 C 0.11 2.36 6.04 86.36 0.52 2.88 16 28 H 0.04 0.74 7.90 -2.39 -0.02 0.72 16 29 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.13 0.38 6.36 -2.39 -0.02 0.36 16 32 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.08 0.39 7.44 -2.39 -0.02 0.37 16 35 H 0.12 -0.12 5.30 -2.38 -0.01 -0.13 16 36 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 38 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 0.68 7.26 -2.39 -0.02 0.67 16 41 H 0.23 4.42 7.35 -2.91 -0.02 4.40 16 42 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.37 21.93 7.66 -92.71 -0.71 21.22 16 45 H 0.25 15.52 8.31 -92.70 -0.77 14.75 16 46 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.06 1.92 7.00 -2.38 -0.02 1.90 16 Total: -1.00 -87.92 379.34 3.37 -84.55 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.26 Total: 21.99 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 6.40 Total: 6.16 kcal Atomic # 7 Polarization: -137.28 SS G_CDS: -5.27 Total: -142.55 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -87.92 3.37 -84.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185873837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.025 kcal (2) G-P(sol) polarization free energy of solvation -87.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds