Wall clock time and date at job start Fri Apr 10 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47419 * 2 1 4 4 C 1.50702 * 109.46796 * 120.00268 * 2 1 3 5 5 O 1.21284 * 119.99634 * 264.76220 * 4 2 1 6 6 N 1.34780 * 120.00377 * 84.75962 * 4 2 1 7 7 C 1.46919 * 120.62720 * 354.92207 * 6 4 2 8 8 C 1.53197 * 108.89281 * 126.46089 * 7 6 4 9 9 C 1.53045 * 109.31259 * 54.56020 * 8 7 6 10 10 C 1.53036 * 109.53810 * 298.63777 * 9 8 7 11 11 H 1.08999 * 109.49956 * 301.38220 * 10 9 8 12 12 N 1.46497 * 109.49978 * 181.31599 * 10 9 8 13 13 C 1.35315 * 125.86564 * 324.71750 * 12 10 9 14 14 C 1.35346 * 106.17413 * 179.90635 * 13 12 10 15 15 C 1.50708 * 126.75272 * 180.12856 * 14 13 12 16 16 N 1.46498 * 109.47264 * 95.23807 * 15 14 13 17 17 C 1.36941 * 119.99520 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99390 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46887 * 90.00220 * 21 19 17 23 23 H 1.48493 * 109.47461 * 210.00366 * 21 19 17 24 24 H 1.48499 * 109.47149 * 330.00540 * 21 19 17 25 25 N 1.33772 * 106.49894 * 0.34385 * 14 13 12 26 26 N 1.28632 * 108.88318 * 359.78182 * 25 14 13 27 27 C 1.46956 * 120.65064 * 174.73475 * 6 4 2 28 28 H 1.09003 * 109.46584 * 60.79951 * 1 2 3 29 29 H 1.09005 * 109.47183 * 180.79840 * 1 2 3 30 30 H 1.09000 * 109.46822 * 300.80133 * 1 2 3 31 31 H 1.09002 * 109.46849 * 239.99407 * 2 1 3 32 32 H 1.08996 * 109.47671 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46961 * 300.00102 * 3 2 1 34 34 H 1.09006 * 109.47277 * 59.99491 * 3 2 1 35 35 H 1.09005 * 109.58987 * 6.60224 * 7 6 4 36 36 H 1.09002 * 109.58529 * 246.31765 * 7 6 4 37 37 H 1.09000 * 109.49992 * 174.51156 * 8 7 6 38 38 H 1.09005 * 109.49565 * 294.60964 * 8 7 6 39 39 H 1.08999 * 109.45817 * 58.65561 * 9 8 7 40 40 H 1.08996 * 109.46031 * 178.63159 * 9 8 7 41 41 H 1.07997 * 126.91267 * 0.02562 * 13 12 10 42 42 H 1.09003 * 109.46738 * 215.24330 * 15 14 13 43 43 H 1.09004 * 109.46697 * 335.23655 * 15 14 13 44 44 H 0.96992 * 120.00219 * 0.02562 * 16 15 14 45 45 H 0.97001 * 120.00400 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46226 * 113.75949 * 27 6 4 47 47 H 1.08997 * 109.71848 * 353.47086 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3248 -0.0745 2.2209 6 7 2.1564 -2.0526 1.2303 7 6 1.7026 -2.8461 0.0802 8 6 2.8551 -3.7376 -0.3931 9 6 3.3657 -4.5720 0.7839 10 6 3.8926 -3.6427 1.8797 11 1 4.6918 -3.0209 1.4762 12 7 4.4099 -4.4428 2.9925 13 6 3.9022 -5.6198 3.4259 14 6 4.6811 -6.0074 4.4627 15 6 4.5284 -7.2602 5.2863 16 7 5.4036 -8.3061 4.7512 17 6 5.4350 -9.5411 5.3420 18 1 4.8144 -9.7442 6.2021 19 6 6.2639 -10.5322 4.8346 20 7 7.0200 -10.2848 3.7861 21 14 6.3074 -12.2167 5.6410 22 1 5.2878 -13.0935 5.0109 23 1 7.6542 -12.8163 5.4627 24 1 6.0146 -12.0794 7.0903 25 7 5.6103 -5.0573 4.6158 26 7 5.4221 -4.1443 3.7294 27 6 2.7519 -2.7500 2.3786 28 1 -0.3632 0.5014 -0.8971 29 1 -0.3634 -1.0276 0.0143 30 1 -0.3633 0.5262 0.8827 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.4010 -2.1793 -0.7277 36 1 0.8574 -3.4677 0.3758 37 1 2.5016 -4.4006 -1.1828 38 1 3.6637 -3.1145 -0.7753 39 1 2.5504 -5.1764 1.1813 40 1 4.1697 -5.2250 0.4443 41 1 3.0486 -6.1452 3.0241 42 1 4.8024 -7.0509 6.3203 43 1 3.4926 -7.5974 5.2460 44 1 5.9614 -8.1236 3.9789 45 1 7.5995 -10.9773 3.4318 46 1 1.9932 -3.3639 2.8640 47 1 3.1421 -2.0215 3.0894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185873838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:17 Heat of formation + Delta-G solvation = 73.084383 kcal Electronic energy + Delta-G solvation = -27130.985196 eV Core-core repulsion = 23351.364103 eV Total energy + Delta-G solvation = -3779.621093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.02145 -40.85563 -38.23961 -35.37403 -34.94044 -34.24969 -32.74540 -31.82182 -30.32543 -29.86624 -27.67701 -26.45373 -25.87983 -24.69027 -23.26910 -22.80552 -22.14331 -20.69676 -20.47030 -19.21156 -18.04271 -17.38968 -16.88665 -16.62700 -16.03586 -15.58233 -14.97761 -14.95648 -14.66423 -14.58479 -14.48694 -14.12658 -13.68070 -13.66987 -13.42123 -13.11958 -13.02264 -12.73607 -12.63500 -12.48783 -12.30154 -11.88714 -11.82968 -11.73101 -11.56829 -11.37952 -11.36803 -11.15297 -10.88684 -10.79320 -10.42773 -10.14661 -10.07700 -9.91794 -9.71738 -9.19694 -8.87098 -8.80341 -6.90055 -5.72526 -3.02061 1.80240 2.07640 2.20845 2.69899 2.94292 3.46326 3.51673 3.53895 3.84451 3.97672 4.15050 4.20036 4.29839 4.35287 4.48473 4.57298 4.62312 4.66705 4.72914 4.84550 4.97293 5.06337 5.11505 5.13235 5.18598 5.23194 5.31015 5.33159 5.35843 5.43930 5.50182 5.53079 5.61731 5.64319 5.65469 5.77107 5.87238 5.90613 6.19500 6.42955 6.67978 6.77488 6.82423 6.84294 7.70110 7.72617 8.44749 8.87350 9.56525 10.12476 10.48545 11.50250 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.002283 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.008777 B =12262.835415 C =12643.940328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.521 3.479 5 O -0.531 6.531 6 N -0.611 5.611 7 C 0.099 3.901 8 C -0.130 4.130 9 C -0.133 4.133 10 C 0.138 3.862 11 H 0.114 0.886 12 N -0.295 5.295 13 C -0.043 4.043 14 C -0.004 4.004 15 C 0.233 3.767 16 N -0.726 5.726 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 N -0.252 5.252 26 N -0.094 5.094 27 C 0.105 3.895 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.186 0.814 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 20.720 -15.303 30.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.194 4.194 4 C 0.309 3.691 5 O -0.406 6.406 6 N -0.346 5.346 7 C -0.024 4.024 8 C -0.169 4.169 9 C -0.172 4.172 10 C 0.034 3.966 11 H 0.131 0.869 12 N -0.089 5.089 13 C -0.194 4.194 14 C -0.142 4.142 15 C 0.104 3.896 16 N -0.370 5.370 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.207 1.207 25 N -0.120 5.120 26 N -0.072 5.072 27 C -0.019 4.019 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.680 21.986 -14.366 30.588 hybrid contribution -0.523 -1.813 -0.282 1.908 sum -16.203 20.173 -14.648 29.733 Atomic orbital electron populations 1.21792 0.92378 1.02683 1.03309 1.21342 0.98005 0.98031 0.96142 1.21671 1.01527 0.93494 1.02719 1.20827 0.77151 0.81228 0.89887 1.90730 1.49415 1.65353 1.35140 1.48052 1.61673 1.06225 1.18631 1.21970 0.97079 0.94892 0.88441 1.21917 0.98627 0.98725 0.97659 1.21962 1.02692 0.97920 0.94588 1.21841 0.97703 0.92691 0.84340 0.86850 1.47233 1.21208 1.16284 1.24186 1.23296 1.04913 0.90436 1.00711 1.22473 0.94070 0.98936 0.98704 1.18949 0.94887 0.81927 0.93884 1.42306 1.49380 1.08858 1.36503 1.19233 1.19862 0.88111 1.09746 0.90881 1.24762 0.99377 0.98505 0.98367 1.69682 1.29679 1.33421 1.25311 0.86154 0.76830 0.84249 0.78731 1.21765 1.21811 1.20663 1.75110 1.20930 1.00231 1.15705 1.78309 1.04691 1.21827 1.02363 1.21845 0.94625 0.96355 0.89065 0.91087 0.92047 0.91726 0.88726 0.92230 0.91710 0.91350 0.88692 0.90474 0.89003 0.90666 0.89919 0.89521 0.79651 0.94311 0.94502 0.78116 0.93542 0.90344 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.98 37.16 0.33 -0.28 16 2 C -0.11 -0.64 2.39 -91.77 -0.22 -0.86 16 3 C -0.14 -0.84 8.72 37.15 0.32 -0.52 16 4 C 0.52 4.78 6.80 -10.98 -0.07 4.71 16 5 O -0.53 -7.24 15.54 5.55 0.09 -7.16 16 6 N -0.61 -4.62 2.98 -172.74 -0.51 -5.14 16 7 C 0.10 0.40 5.81 -3.71 -0.02 0.38 16 8 C -0.13 -0.56 6.08 -26.61 -0.16 -0.72 16 9 C -0.13 -0.95 4.78 -26.69 -0.13 -1.08 16 10 C 0.14 1.38 3.27 -67.81 -0.22 1.15 16 11 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 12 N -0.29 -4.27 3.26 -54.65 -0.18 -4.44 16 13 C -0.04 -0.66 10.63 -17.05 -0.18 -0.84 16 14 C 0.00 -0.08 6.62 -82.77 -0.55 -0.63 16 15 C 0.23 4.97 6.82 -5.19 -0.04 4.93 16 16 N -0.73 -19.17 5.59 -61.08 -0.34 -19.51 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 21 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 N -0.25 -5.32 12.41 33.29 0.41 -4.91 16 26 N -0.09 -1.73 13.16 60.35 0.79 -0.94 16 27 C 0.11 1.01 6.02 -3.69 -0.02 0.99 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.21 7.33 -51.93 -0.38 -0.17 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.33 6.50 -51.93 -0.34 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 34 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.09 0.20 5.09 -51.93 -0.26 -0.06 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.54 7.25 -51.93 -0.38 0.16 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.19 2.16 7.35 -52.49 -0.39 1.77 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.39 10.97 7.66 -40.82 -0.31 10.66 16 45 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 1.29 7.05 -51.93 -0.37 0.93 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -36.75 379.22 -6.98 -43.73 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.45 Total: 3.38 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.20 Total: -0.19 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: 0.90 Total: -63.07 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.09 Total: -7.16 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.75 -6.98 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185873838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.814 kcal (2) G-P(sol) polarization free energy of solvation -36.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds