Wall clock time and date at job start Fri Apr 10 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47419 * 2 1 4 4 C 1.50702 * 109.46796 * 120.00268 * 2 1 3 5 5 O 1.21284 * 119.99634 * 264.76220 * 4 2 1 6 6 N 1.34780 * 120.00377 * 84.75962 * 4 2 1 7 7 C 1.46919 * 120.62720 * 354.92207 * 6 4 2 8 8 C 1.53197 * 108.89281 * 126.46089 * 7 6 4 9 9 C 1.53045 * 109.31259 * 54.56020 * 8 7 6 10 10 C 1.53036 * 109.53810 * 298.63777 * 9 8 7 11 11 H 1.08999 * 109.49956 * 301.38220 * 10 9 8 12 12 N 1.46497 * 109.49978 * 181.31599 * 10 9 8 13 13 C 1.35315 * 125.86564 * 324.71750 * 12 10 9 14 14 C 1.35346 * 106.17413 * 179.90635 * 13 12 10 15 15 C 1.50708 * 126.75272 * 180.12856 * 14 13 12 16 16 N 1.46498 * 109.47264 * 95.23807 * 15 14 13 17 17 C 1.36941 * 119.99520 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99390 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46887 * 90.00220 * 21 19 17 23 23 H 1.48493 * 109.47461 * 210.00366 * 21 19 17 24 24 H 1.48499 * 109.47149 * 330.00540 * 21 19 17 25 25 N 1.33772 * 106.49894 * 0.34385 * 14 13 12 26 26 N 1.28632 * 108.88318 * 359.78182 * 25 14 13 27 27 C 1.46956 * 120.65064 * 174.73475 * 6 4 2 28 28 H 1.09003 * 109.46584 * 60.79951 * 1 2 3 29 29 H 1.09005 * 109.47183 * 180.79840 * 1 2 3 30 30 H 1.09000 * 109.46822 * 300.80133 * 1 2 3 31 31 H 1.09002 * 109.46849 * 239.99407 * 2 1 3 32 32 H 1.08996 * 109.47671 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46961 * 300.00102 * 3 2 1 34 34 H 1.09006 * 109.47277 * 59.99491 * 3 2 1 35 35 H 1.09005 * 109.58987 * 6.60224 * 7 6 4 36 36 H 1.09002 * 109.58529 * 246.31765 * 7 6 4 37 37 H 1.09000 * 109.49992 * 174.51156 * 8 7 6 38 38 H 1.09005 * 109.49565 * 294.60964 * 8 7 6 39 39 H 1.08999 * 109.45817 * 58.65561 * 9 8 7 40 40 H 1.08996 * 109.46031 * 178.63159 * 9 8 7 41 41 H 1.07997 * 126.91267 * 0.02562 * 13 12 10 42 42 H 1.09003 * 109.46738 * 215.24330 * 15 14 13 43 43 H 1.09004 * 109.46697 * 335.23655 * 15 14 13 44 44 H 0.96992 * 120.00219 * 0.02562 * 16 15 14 45 45 H 0.97001 * 120.00400 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46226 * 113.75949 * 27 6 4 47 47 H 1.08997 * 109.71848 * 353.47086 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3248 -0.0745 2.2209 6 7 2.1564 -2.0526 1.2303 7 6 1.7026 -2.8461 0.0802 8 6 2.8551 -3.7376 -0.3931 9 6 3.3657 -4.5720 0.7839 10 6 3.8926 -3.6427 1.8797 11 1 4.6918 -3.0209 1.4762 12 7 4.4099 -4.4428 2.9925 13 6 3.9022 -5.6198 3.4259 14 6 4.6811 -6.0074 4.4627 15 6 4.5284 -7.2602 5.2863 16 7 5.4036 -8.3061 4.7512 17 6 5.4350 -9.5411 5.3420 18 1 4.8144 -9.7442 6.2021 19 6 6.2639 -10.5322 4.8346 20 7 7.0200 -10.2848 3.7861 21 14 6.3074 -12.2167 5.6410 22 1 5.2878 -13.0935 5.0109 23 1 7.6542 -12.8163 5.4627 24 1 6.0146 -12.0794 7.0903 25 7 5.6103 -5.0573 4.6158 26 7 5.4221 -4.1443 3.7294 27 6 2.7519 -2.7500 2.3786 28 1 -0.3632 0.5014 -0.8971 29 1 -0.3634 -1.0276 0.0143 30 1 -0.3633 0.5262 0.8827 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.4010 -2.1793 -0.7277 36 1 0.8574 -3.4677 0.3758 37 1 2.5016 -4.4006 -1.1828 38 1 3.6637 -3.1145 -0.7753 39 1 2.5504 -5.1764 1.1813 40 1 4.1697 -5.2250 0.4443 41 1 3.0486 -6.1452 3.0241 42 1 4.8024 -7.0509 6.3203 43 1 3.4926 -7.5974 5.2460 44 1 5.9614 -8.1236 3.9789 45 1 7.5995 -10.9773 3.4318 46 1 1.9932 -3.3639 2.8640 47 1 3.1421 -2.0215 3.0894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185873838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:16 Heat of formation + Delta-G solvation = 46.629334 kcal Electronic energy + Delta-G solvation = -27132.132373 eV Core-core repulsion = 23351.364103 eV Total energy + Delta-G solvation = -3780.768270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.34783 -41.52806 -38.98897 -36.86155 -35.92576 -35.21036 -33.82504 -33.23438 -31.64039 -31.22347 -28.07742 -27.70718 -27.03303 -25.55934 -24.79708 -23.78008 -23.10986 -22.10053 -21.32557 -19.81602 -19.34642 -18.68486 -18.01568 -17.61409 -16.88597 -16.57634 -16.34742 -16.03672 -15.63879 -15.54170 -15.43261 -15.10544 -15.00248 -14.66096 -14.36358 -14.23954 -13.97580 -13.69739 -13.58743 -13.16472 -13.04057 -12.95768 -12.79505 -12.72507 -12.59383 -12.40044 -12.23895 -12.08795 -12.05165 -11.92626 -11.90897 -11.81521 -11.71818 -11.19616 -10.95334 -10.77435 -10.26556 -9.84230 -9.01935 -7.92853 -5.23451 0.55350 1.13916 1.43651 1.51221 1.52122 1.52974 1.61712 1.95092 2.59876 3.11196 3.29704 3.38175 3.45783 3.54222 3.67376 3.85381 3.90120 3.95026 3.97590 4.06157 4.13678 4.19188 4.23517 4.39400 4.41301 4.50784 4.57631 4.64099 4.73181 4.76406 4.85089 4.85785 4.89008 4.95064 4.98492 5.05259 5.11216 5.16302 5.23561 5.26451 5.32351 5.34548 5.51560 5.64648 6.24711 6.26648 7.03917 7.33490 7.47889 8.04303 8.30724 9.31065 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.002283 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.008777 B =12262.835415 C =12643.940328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.138 4.138 4 C 0.512 3.488 5 O -0.589 6.589 6 N -0.606 5.606 7 C 0.093 3.907 8 C -0.123 4.123 9 C -0.130 4.130 10 C 0.134 3.866 11 H 0.106 0.894 12 N -0.279 5.279 13 C -0.013 4.013 14 C -0.037 4.037 15 C 0.236 3.764 16 N -0.739 5.739 17 C -0.243 4.243 18 H 0.085 0.915 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.980 3.020 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.269 1.269 25 N -0.298 5.298 26 N -0.119 5.119 27 C 0.112 3.888 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.127 0.873 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.229 0.771 42 H 0.027 0.973 43 H 0.066 0.934 44 H 0.371 0.629 45 H 0.251 0.749 46 H 0.088 0.912 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.847 19.993 -17.740 33.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.195 4.195 4 C 0.302 3.698 5 O -0.468 6.468 6 N -0.339 5.339 7 C -0.028 4.028 8 C -0.161 4.161 9 C -0.168 4.168 10 C 0.032 3.968 11 H 0.124 0.876 12 N -0.073 5.073 13 C -0.165 4.165 14 C -0.176 4.176 15 C 0.108 3.892 16 N -0.381 5.381 17 C -0.374 4.374 18 H 0.103 0.897 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.808 3.192 22 H -0.208 1.208 23 H -0.226 1.226 24 H -0.193 1.193 25 N -0.164 5.164 26 N -0.097 5.097 27 C -0.013 4.013 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.245 0.755 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.636 21.285 -16.815 32.911 hybrid contribution 0.320 -1.465 0.437 1.562 sum -18.316 19.820 -16.378 31.568 Atomic orbital electron populations 1.21811 0.90949 1.03645 1.03455 1.21431 0.98995 0.97206 0.95177 1.21689 1.00733 0.94289 1.02826 1.21639 0.76241 0.81559 0.90338 1.90708 1.52019 1.66645 1.37434 1.48180 1.60684 1.06082 1.18913 1.22338 0.97420 0.95264 0.87732 1.21939 0.98616 0.98737 0.96823 1.22044 1.02722 0.97645 0.94405 1.22242 0.97611 0.93188 0.83742 0.87589 1.47600 1.19715 1.16161 1.23871 1.23744 1.04419 0.89775 0.98529 1.22352 0.95693 0.98768 1.00758 1.18976 0.95088 0.81750 0.93349 1.42507 1.50003 1.09537 1.36089 1.19695 1.19232 0.88881 1.09611 0.89750 1.25655 0.99558 1.02549 0.99295 1.69857 1.30898 1.34460 1.27143 0.85046 0.76356 0.79450 0.78310 1.20769 1.22621 1.19347 1.75034 1.22602 1.01415 1.17375 1.78213 1.06588 1.21863 1.03073 1.21596 0.94631 0.95486 0.89570 0.88800 0.90612 0.93813 0.85484 0.93540 0.89050 0.93730 0.85898 0.88586 0.86152 0.90761 0.88352 0.90669 0.75457 0.95505 0.91641 0.79834 0.94077 0.89337 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.98 71.98 0.65 -0.14 16 2 C -0.11 -0.95 2.39 -11.54 -0.03 -0.98 16 3 C -0.14 -1.57 8.72 71.98 0.63 -0.94 16 4 C 0.51 9.04 6.80 87.66 0.60 9.64 16 5 O -0.59 -16.95 15.54 -3.04 -0.05 -17.00 16 6 N -0.61 -8.01 2.98 -818.81 -2.44 -10.45 16 7 C 0.09 0.35 5.81 86.37 0.50 0.85 16 8 C -0.12 -0.53 6.08 30.68 0.19 -0.35 16 9 C -0.13 -1.47 4.78 30.62 0.15 -1.32 16 10 C 0.13 2.54 3.27 45.07 0.15 2.69 16 11 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 12 N -0.28 -7.98 3.26 -326.81 -1.06 -9.04 16 13 C -0.01 -0.37 10.63 83.49 0.89 0.51 16 14 C -0.04 -1.44 6.62 41.60 0.28 -1.17 16 15 C 0.24 10.05 6.82 85.64 0.58 10.63 16 16 N -0.74 -39.30 5.59 -347.17 -1.94 -41.24 16 17 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 21 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 N -0.30 -13.00 12.41 -48.60 -0.60 -13.60 16 26 N -0.12 -4.56 13.16 37.02 0.49 -4.07 16 27 C 0.11 2.08 6.02 86.36 0.52 2.60 16 28 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.07 0.22 7.33 -2.38 -0.02 0.20 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.13 0.31 6.50 -2.39 -0.02 0.30 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.04 0.72 7.87 -2.38 -0.02 0.70 16 35 H 0.12 -0.16 5.09 -2.38 -0.01 -0.18 16 36 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 39 H 0.10 0.84 7.25 -2.39 -0.02 0.82 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.23 4.42 7.35 -2.91 -0.02 4.40 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.37 21.58 7.66 -92.71 -0.71 20.87 16 45 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.80 7.05 -2.39 -0.02 1.78 16 Total: -1.00 -85.14 379.22 3.36 -81.77 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.26 Total: 20.92 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.40 Total: 5.00 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -5.28 Total: -139.23 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -85.14 3.36 -81.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185873838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.403 kcal (2) G-P(sol) polarization free energy of solvation -85.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds