Wall clock time and date at job start Fri Apr 10 2020 18:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99430 * 2 1 4 4 C 1.50709 * 109.46890 * 269.99465 * 3 2 1 5 5 O 1.21284 * 119.99671 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99787 * 180.02562 * 4 3 2 7 7 C 1.47399 * 125.59113 * 0.02971 * 6 4 3 8 8 C 1.54860 * 104.80904 * 204.58387 * 7 6 4 9 9 C 1.55127 * 101.77556 * 322.81371 * 8 7 6 10 10 H 1.08998 * 113.45731 * 159.24372 * 9 8 7 11 11 C 1.54045 * 108.25762 * 286.08779 * 9 8 7 12 12 N 1.46702 * 106.82753 * 135.80812 * 11 9 8 13 13 C 1.36936 * 125.32290 * 161.79875 * 12 11 9 14 14 H 1.07992 * 119.99993 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99883 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99427 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47460 * 60.00389 * 17 15 13 19 19 H 1.48508 * 109.46748 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47338 * 299.99606 * 17 15 13 21 21 C 1.46644 * 109.35560 * 341.82069 * 12 11 9 22 22 C 1.46733 * 125.58330 * 179.97438 * 6 4 3 23 23 H 1.08993 * 111.83839 * 55.83779 * 22 6 4 24 24 C 1.34771 * 120.00180 * 179.97438 * 2 1 3 25 25 O 1.21287 * 119.99719 * 180.02562 * 24 2 1 26 26 C 1.50701 * 120.00264 * 359.97438 * 24 2 1 27 27 C 1.52999 * 117.50240 * 248.62478 * 26 24 2 28 28 C 1.52994 * 117.49892 * 180.02562 * 26 24 2 29 29 H 1.08997 * 109.46982 * 90.00903 * 1 2 3 30 30 H 1.09000 * 109.46859 * 209.99881 * 1 2 3 31 31 H 1.08994 * 109.47861 * 330.00315 * 1 2 3 32 32 H 1.09000 * 109.47060 * 150.00239 * 3 2 1 33 33 H 1.09000 * 109.47518 * 29.99466 * 3 2 1 34 34 H 1.08998 * 110.37337 * 85.75457 * 7 6 4 35 35 H 1.08996 * 110.36914 * 323.41838 * 7 6 4 36 36 H 1.08996 * 110.96597 * 204.68938 * 8 7 6 37 37 H 1.09010 * 110.96354 * 80.93426 * 8 7 6 38 38 H 1.08996 * 109.98631 * 255.15479 * 11 9 8 39 39 H 1.09004 * 109.98462 * 16.42520 * 11 9 8 40 40 H 0.97001 * 119.99606 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.75127 * 120.92783 * 21 12 11 42 42 H 1.08998 * 109.75389 * 241.62791 * 21 12 11 43 43 H 1.09000 * 115.54360 * 34.33550 * 26 24 2 44 44 H 1.09004 * 117.49659 * 0.02562 * 27 26 24 45 45 H 1.08995 * 117.50169 * 145.01619 * 27 26 24 46 46 H 1.09005 * 117.50112 * 214.98314 * 28 26 24 47 47 H 1.08998 * 117.50327 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0542 1.0213 -2.3427 6 7 3.1115 2.8511 -1.6672 7 6 3.6436 3.7707 -0.6455 8 6 3.7189 5.1466 -1.3521 9 6 4.1531 4.7430 -2.7856 10 1 3.9262 5.4994 -3.5369 11 6 5.6410 4.3463 -2.7455 12 7 5.7749 3.1191 -3.5381 13 6 6.9476 2.6309 -4.0496 14 1 7.8730 3.1608 -3.8792 15 6 6.9468 1.4548 -4.7871 16 7 5.8189 0.8088 -4.9943 17 14 8.5467 0.7886 -5.4842 18 1 9.4945 0.5153 -4.3742 19 1 8.2775 -0.4696 -6.2257 20 1 9.1398 1.7900 -6.4065 21 6 4.4565 2.4971 -3.6974 22 6 3.4228 3.3889 -2.9965 23 1 2.5265 3.5105 -3.6047 24 6 2.1389 -1.1671 0.0005 25 8 3.3518 -1.1670 0.0010 26 6 1.3855 -2.4723 0.0017 27 6 1.4611 -3.3306 1.2660 28 6 2.2077 -3.7626 0.0028 29 1 -0.3633 -0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5137 32 1 3.1498 1.1385 0.5138 33 1 1.6082 2.0285 0.5137 34 1 4.6366 3.4521 -0.3285 35 1 2.9690 3.8195 0.2092 36 1 4.4673 5.7854 -0.8832 37 1 2.7437 5.6336 -1.3625 38 1 6.2498 5.1390 -3.1804 39 1 5.9498 4.1617 -1.7166 40 1 5.8184 -0.0128 -5.5100 41 1 4.2139 2.4143 -4.7568 42 1 4.4587 1.5071 -3.2414 43 1 0.4470 -2.4737 -0.5527 44 1 2.0555 -2.9511 2.0971 45 1 0.5722 -3.8969 1.5438 46 1 1.8101 -4.6132 -0.5507 47 1 3.2935 -3.6675 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188107675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:20 Heat of formation + Delta-G solvation = 7.984491 kcal Electronic energy + Delta-G solvation = -28587.427800 eV Core-core repulsion = 24772.691013 eV Total energy + Delta-G solvation = -3814.736787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43995 -39.73946 -37.79482 -36.18062 -35.24566 -34.71333 -32.16333 -30.80818 -29.62972 -28.23962 -26.65260 -26.18187 -24.63946 -23.80961 -22.54007 -22.31685 -20.69198 -19.72125 -18.97747 -18.44166 -17.50265 -17.18573 -16.60049 -16.15670 -15.84153 -15.11616 -14.94904 -14.62497 -14.38236 -14.08053 -13.73357 -13.65077 -13.24262 -12.96673 -12.80798 -12.69087 -12.59276 -12.37075 -12.14669 -11.89663 -11.63775 -11.62579 -11.48879 -11.05715 -10.93321 -10.71713 -10.66023 -10.56660 -10.42174 -10.19261 -10.10321 -9.80763 -9.75652 -9.63427 -9.60072 -8.59717 -8.45834 -8.09802 -6.71476 -5.57503 -2.93758 2.49235 2.86327 3.07074 3.48046 3.50675 3.51835 3.54373 3.80788 4.42037 4.57552 4.67392 4.69352 4.78817 4.80252 4.92981 5.00632 5.08528 5.16004 5.20384 5.35939 5.41642 5.46308 5.55129 5.56911 5.62764 5.64293 5.68867 5.80281 5.80889 5.83442 5.91018 6.05364 6.06954 6.25563 6.30705 6.40508 6.55064 6.62320 6.69701 6.93070 7.33101 7.63928 7.75348 7.99474 8.04413 8.25622 8.39817 8.65525 9.33286 9.94734 10.58063 11.52176 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.004542 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.042325 B = 6163.403518 C = 8055.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.599 5.599 3 C 0.104 3.896 4 C 0.510 3.490 5 O -0.523 6.523 6 N -0.603 5.603 7 C 0.099 3.901 8 C -0.123 4.123 9 C -0.110 4.110 10 H 0.097 0.903 11 C 0.142 3.858 12 N -0.602 5.602 13 C -0.237 4.237 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.914 5.914 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.176 3.824 22 C 0.116 3.884 23 H 0.077 0.923 24 C 0.548 3.452 25 O -0.526 6.526 26 C -0.189 4.189 27 C -0.154 4.154 28 C -0.147 4.147 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 2.000 15.172 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C -0.023 4.023 4 C 0.297 3.703 5 O -0.398 6.398 6 N -0.339 5.339 7 C -0.024 4.024 8 C -0.162 4.162 9 C -0.130 4.130 10 H 0.115 0.885 11 C 0.016 3.984 12 N -0.329 5.329 13 C -0.365 4.365 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.560 5.560 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.051 3.949 22 C 0.012 3.988 23 H 0.095 0.905 24 C 0.336 3.664 25 O -0.402 6.402 26 C -0.210 4.210 27 C -0.192 4.192 28 C -0.184 4.184 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.982 1.333 14.560 20.230 hybrid contribution 0.737 -0.231 -0.529 0.936 sum -13.244 1.101 14.031 19.326 Atomic orbital electron populations 1.21816 0.78991 1.02816 1.02433 1.47246 1.07015 1.04815 1.74114 1.21278 0.99832 0.86194 0.95007 1.20604 0.78204 0.79825 0.91698 1.90726 1.51025 1.52059 1.45965 1.48400 1.55578 1.21890 1.07990 1.22336 0.99295 0.89575 0.91194 1.22748 1.01603 0.95831 0.95969 1.23143 0.97516 0.96043 0.96312 0.88459 1.21294 0.92042 0.90123 0.94942 1.44200 1.04374 1.23152 1.61127 1.18946 0.85229 1.05153 1.27148 0.90530 1.24841 0.97086 0.97682 1.00564 1.69988 1.23967 1.18257 1.43815 0.86224 0.82711 0.78200 0.78742 1.21190 1.21610 1.21174 1.21227 0.81657 0.94010 0.98010 1.22561 0.98486 0.93979 0.83772 0.90523 1.19650 0.87318 0.84252 0.75188 1.90754 1.13823 1.86970 1.48615 1.22158 1.02811 0.90757 1.05293 1.22919 1.03165 1.01690 0.91410 1.22960 1.00379 0.95334 0.99774 0.92089 0.90667 0.91200 0.87186 0.88004 0.90970 0.91350 0.89961 0.91106 0.94832 0.96510 0.93639 0.93213 0.92749 0.85774 0.88368 0.87910 0.87887 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.05 59.85 0.60 1.38 16 2 N -0.60 -8.42 2.36 -182.95 -0.43 -8.85 16 3 C 0.10 1.48 4.93 -5.19 -0.03 1.45 16 4 C 0.51 9.75 7.47 -10.98 -0.08 9.67 16 5 O -0.52 -12.32 16.31 5.55 0.09 -12.23 16 6 N -0.60 -10.92 2.98 -162.43 -0.48 -11.40 16 7 C 0.10 1.35 6.22 -2.57 -0.02 1.34 16 8 C -0.12 -1.52 6.35 -24.63 -0.16 -1.67 16 9 C -0.11 -1.86 4.33 -87.74 -0.38 -2.24 16 10 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 11 C 0.14 2.96 6.45 -3.39 -0.02 2.94 16 12 N -0.60 -16.21 3.38 -172.03 -0.58 -16.79 16 13 C -0.24 -6.97 10.25 -15.06 -0.15 -7.12 16 14 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 15 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 16 N -0.91 -29.28 10.24 55.49 0.57 -28.71 16 17 Si 0.91 23.47 29.55 -169.99 -5.02 18.45 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.18 4.72 4.91 -3.72 -0.02 4.70 16 22 C 0.12 2.35 3.59 -66.35 -0.24 2.11 16 23 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 24 C 0.55 8.98 7.46 -10.99 -0.08 8.90 16 25 O -0.53 -11.14 15.84 5.55 0.09 -11.05 16 26 C -0.19 -2.30 4.80 -91.77 -0.44 -2.74 16 27 C -0.15 -1.44 10.23 -26.76 -0.27 -1.72 16 28 C -0.15 -1.71 10.04 -26.76 -0.27 -1.98 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.53 6.64 -51.93 -0.34 0.19 16 31 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 32 H 0.11 1.67 7.42 -51.93 -0.39 1.29 16 33 H 0.10 0.99 7.59 -51.93 -0.39 0.59 16 34 H 0.07 1.09 7.18 -51.93 -0.37 0.72 16 35 H 0.07 0.67 7.45 -51.93 -0.39 0.29 16 36 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 40 H 0.25 7.95 8.31 -40.82 -0.34 7.61 16 41 H 0.05 1.49 7.33 -51.93 -0.38 1.11 16 42 H 0.05 1.72 6.66 -51.93 -0.35 1.37 16 43 H 0.12 1.26 7.26 -51.93 -0.38 0.89 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.11 1.53 7.67 -51.93 -0.40 1.13 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -39.82 373.52 -9.28 -49.10 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.48 Total: 1.06 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: -1.65 Total: 14.78 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.93 Total: -65.75 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.18 Total: -23.28 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.82 -9.28 -49.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188107675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.088 kcal (2) G-P(sol) polarization free energy of solvation -39.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds