Wall clock time and date at job start Fri Apr 10 2020 18:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99430 * 2 1 4 4 C 1.50709 * 109.46890 * 269.99465 * 3 2 1 5 5 O 1.21284 * 119.99671 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99787 * 180.02562 * 4 3 2 7 7 C 1.47399 * 125.59113 * 0.02971 * 6 4 3 8 8 C 1.54860 * 104.80904 * 204.58387 * 7 6 4 9 9 C 1.55127 * 101.77556 * 322.81371 * 8 7 6 10 10 H 1.08998 * 113.45731 * 159.24372 * 9 8 7 11 11 C 1.54045 * 108.25762 * 286.08779 * 9 8 7 12 12 N 1.46702 * 106.82753 * 135.80812 * 11 9 8 13 13 C 1.36936 * 125.32290 * 161.79875 * 12 11 9 14 14 H 1.07992 * 119.99993 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99883 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99427 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47460 * 60.00389 * 17 15 13 19 19 H 1.48508 * 109.46748 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47338 * 299.99606 * 17 15 13 21 21 C 1.46644 * 109.35560 * 341.82069 * 12 11 9 22 22 C 1.46733 * 125.58330 * 179.97438 * 6 4 3 23 23 H 1.08993 * 111.83839 * 55.83779 * 22 6 4 24 24 C 1.34771 * 120.00180 * 179.97438 * 2 1 3 25 25 O 1.21287 * 119.99719 * 180.02562 * 24 2 1 26 26 C 1.50701 * 120.00264 * 359.97438 * 24 2 1 27 27 C 1.52999 * 117.50240 * 248.62478 * 26 24 2 28 28 C 1.52994 * 117.49892 * 180.02562 * 26 24 2 29 29 H 1.08997 * 109.46982 * 90.00903 * 1 2 3 30 30 H 1.09000 * 109.46859 * 209.99881 * 1 2 3 31 31 H 1.08994 * 109.47861 * 330.00315 * 1 2 3 32 32 H 1.09000 * 109.47060 * 150.00239 * 3 2 1 33 33 H 1.09000 * 109.47518 * 29.99466 * 3 2 1 34 34 H 1.08998 * 110.37337 * 85.75457 * 7 6 4 35 35 H 1.08996 * 110.36914 * 323.41838 * 7 6 4 36 36 H 1.08996 * 110.96597 * 204.68938 * 8 7 6 37 37 H 1.09010 * 110.96354 * 80.93426 * 8 7 6 38 38 H 1.08996 * 109.98631 * 255.15479 * 11 9 8 39 39 H 1.09004 * 109.98462 * 16.42520 * 11 9 8 40 40 H 0.97001 * 119.99606 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.75127 * 120.92783 * 21 12 11 42 42 H 1.08998 * 109.75389 * 241.62791 * 21 12 11 43 43 H 1.09000 * 115.54360 * 34.33550 * 26 24 2 44 44 H 1.09004 * 117.49659 * 0.02562 * 27 26 24 45 45 H 1.08995 * 117.50169 * 145.01619 * 27 26 24 46 46 H 1.09005 * 117.50112 * 214.98314 * 28 26 24 47 47 H 1.08998 * 117.50327 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0542 1.0213 -2.3427 6 7 3.1115 2.8511 -1.6672 7 6 3.6436 3.7707 -0.6455 8 6 3.7189 5.1466 -1.3521 9 6 4.1531 4.7430 -2.7856 10 1 3.9262 5.4994 -3.5369 11 6 5.6410 4.3463 -2.7455 12 7 5.7749 3.1191 -3.5381 13 6 6.9476 2.6309 -4.0496 14 1 7.8730 3.1608 -3.8792 15 6 6.9468 1.4548 -4.7871 16 7 5.8189 0.8088 -4.9943 17 14 8.5467 0.7886 -5.4842 18 1 9.4945 0.5153 -4.3742 19 1 8.2775 -0.4696 -6.2257 20 1 9.1398 1.7900 -6.4065 21 6 4.4565 2.4971 -3.6974 22 6 3.4228 3.3889 -2.9965 23 1 2.5265 3.5105 -3.6047 24 6 2.1389 -1.1671 0.0005 25 8 3.3518 -1.1670 0.0010 26 6 1.3855 -2.4723 0.0017 27 6 1.4611 -3.3306 1.2660 28 6 2.2077 -3.7626 0.0028 29 1 -0.3633 -0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5137 32 1 3.1498 1.1385 0.5138 33 1 1.6082 2.0285 0.5137 34 1 4.6366 3.4521 -0.3285 35 1 2.9690 3.8195 0.2092 36 1 4.4673 5.7854 -0.8832 37 1 2.7437 5.6336 -1.3625 38 1 6.2498 5.1390 -3.1804 39 1 5.9498 4.1617 -1.7166 40 1 5.8184 -0.0128 -5.5100 41 1 4.2139 2.4143 -4.7568 42 1 4.4587 1.5071 -3.2414 43 1 0.4470 -2.4737 -0.5527 44 1 2.0555 -2.9511 2.0971 45 1 0.5722 -3.8969 1.5438 46 1 1.8101 -4.6132 -0.5507 47 1 3.2935 -3.6675 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188107675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:20 Heat of formation + Delta-G solvation = -21.452251 kcal Electronic energy + Delta-G solvation = -28588.704273 eV Core-core repulsion = 24772.691013 eV Total energy + Delta-G solvation = -3816.013260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80013 -41.05336 -39.30459 -37.19904 -36.57687 -36.45696 -34.02396 -32.48756 -31.15974 -29.71176 -27.90074 -27.53847 -26.63406 -24.95018 -23.61682 -23.34965 -22.57425 -21.11460 -20.29575 -19.78389 -18.99342 -18.56966 -18.31693 -17.41273 -17.15052 -16.88678 -16.21431 -16.08784 -15.79466 -15.53411 -15.36039 -14.85900 -14.72344 -14.45282 -14.18189 -13.95655 -13.88849 -13.58014 -13.44367 -13.28164 -13.03615 -12.94046 -12.82841 -12.79704 -12.47311 -12.45330 -12.22471 -11.90735 -11.88295 -11.61777 -11.60504 -11.46553 -11.41772 -11.14765 -10.97869 -10.77581 -9.77062 -9.62310 -8.95327 -7.89015 -5.28059 1.29188 1.35724 1.41886 1.48164 1.61559 1.81389 2.22520 2.43672 2.86295 3.27786 3.36936 3.47812 3.56374 3.75238 3.78099 3.80461 3.94482 3.96185 4.07443 4.20183 4.25169 4.29633 4.31299 4.44874 4.52589 4.59752 4.67528 4.69371 4.72122 4.83618 4.83975 4.91560 4.92873 4.98958 5.10449 5.18431 5.18690 5.28836 5.33603 5.37844 5.40289 5.60768 5.75382 6.13470 6.24403 6.59997 7.01912 7.06004 7.20778 7.74537 8.36089 9.19170 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.004542 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.042325 B = 6163.403518 C = 8055.651581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.110 3.890 4 C 0.497 3.503 5 O -0.583 6.583 6 N -0.605 5.605 7 C 0.089 3.911 8 C -0.102 4.102 9 C -0.097 4.097 10 H 0.119 0.881 11 C 0.133 3.867 12 N -0.625 5.625 13 C -0.246 4.246 14 H 0.090 0.910 15 C -0.074 4.074 16 N -0.955 5.955 17 Si 0.982 3.018 18 H -0.276 1.276 19 H -0.299 1.299 20 H -0.265 1.265 21 C 0.196 3.804 22 C 0.119 3.881 23 H 0.075 0.925 24 C 0.531 3.469 25 O -0.594 6.594 26 C -0.203 4.203 27 C -0.115 4.115 28 C -0.169 4.169 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.053 0.947 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.241 0.759 41 H -0.003 1.003 42 H -0.010 1.010 43 H 0.148 0.852 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.125 0.875 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 4.498 18.265 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.017 4.017 4 C 0.285 3.715 5 O -0.463 6.463 6 N -0.339 5.339 7 C -0.032 4.032 8 C -0.140 4.140 9 C -0.116 4.116 10 H 0.137 0.863 11 C 0.009 3.991 12 N -0.351 5.351 13 C -0.375 4.375 14 H 0.108 0.892 15 C -0.267 4.267 16 N -0.604 5.604 17 Si 0.809 3.191 18 H -0.202 1.202 19 H -0.226 1.226 20 H -0.191 1.191 21 C 0.070 3.930 22 C 0.014 3.986 23 H 0.093 0.907 24 C 0.322 3.678 25 O -0.474 6.474 26 C -0.224 4.224 27 C -0.152 4.152 28 C -0.206 4.206 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.180 0.820 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.015 0.985 42 H 0.008 0.992 43 H 0.165 0.835 44 H 0.111 0.889 45 H 0.163 0.837 46 H 0.144 0.856 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.704 3.927 17.715 23.997 hybrid contribution 1.298 -0.976 -1.494 2.206 sum -14.406 2.951 16.222 21.895 Atomic orbital electron populations 1.22135 0.75948 1.06042 1.02380 1.47507 1.08958 1.04102 1.72354 1.21413 1.00764 0.87844 0.91648 1.21672 0.77248 0.79294 0.93254 1.90690 1.53611 1.53784 1.48212 1.48531 1.54834 1.22422 1.08073 1.22718 0.99506 0.89167 0.91792 1.22801 1.04296 0.95291 0.91619 1.23153 0.93628 0.94226 1.00637 0.86273 1.21622 0.95438 0.87793 0.94286 1.44544 1.03640 1.25304 1.61630 1.19499 0.86782 1.05086 1.26130 0.89184 1.25841 1.00609 0.98448 1.01784 1.70324 1.26615 1.18320 1.45114 0.85101 0.78492 0.77252 0.78226 1.20168 1.22589 1.19057 1.20732 0.84111 0.92971 0.95182 1.22278 0.96619 0.94756 0.84956 0.90707 1.20540 0.86947 0.86336 0.74022 1.90714 1.16745 1.88088 1.51887 1.22249 1.03109 0.88718 1.08278 1.23053 1.03493 0.99109 0.89573 1.23006 0.98662 0.96112 1.02862 0.93705 0.87861 0.87667 0.88389 0.82025 0.92826 0.86103 0.86941 0.87568 0.93606 0.95413 0.94988 0.98532 0.99169 0.83470 0.88904 0.83742 0.85639 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.05 127.77 1.28 2.53 16 2 N -0.60 -16.48 2.36 -851.13 -2.01 -18.49 16 3 C 0.11 3.02 4.93 85.64 0.42 3.44 16 4 C 0.50 19.44 7.47 87.66 0.65 20.10 16 5 O -0.58 -29.44 16.31 -3.04 -0.05 -29.49 16 6 N -0.60 -21.70 2.98 -786.19 -2.35 -24.05 16 7 C 0.09 2.13 6.22 86.84 0.54 2.67 16 8 C -0.10 -1.98 6.35 31.96 0.20 -1.78 16 9 C -0.10 -3.03 4.33 -8.93 -0.04 -3.07 16 10 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 11 C 0.13 5.39 6.45 86.69 0.56 5.95 16 12 N -0.62 -34.96 3.38 -698.19 -2.36 -37.32 16 13 C -0.25 -14.99 10.25 84.03 0.86 -14.13 16 14 H 0.09 5.09 7.83 -2.91 -0.02 5.07 16 15 C -0.07 -4.71 5.48 84.86 0.47 -4.24 16 16 N -0.95 -66.12 10.24 21.65 0.22 -65.90 16 17 Si 0.98 50.34 29.55 68.60 2.03 52.37 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 19 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.20 11.32 4.91 86.51 0.43 11.75 16 22 C 0.12 4.93 3.59 45.89 0.16 5.10 16 23 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 24 C 0.53 18.08 7.46 87.66 0.65 18.73 16 25 O -0.59 -27.20 15.84 -3.05 -0.05 -27.25 16 26 C -0.20 -4.86 4.80 -11.54 -0.06 -4.92 16 27 C -0.12 -1.92 10.23 30.58 0.31 -1.61 16 28 C -0.17 -4.04 10.04 30.58 0.31 -3.73 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.11 6.64 -2.39 -0.02 1.10 16 31 H 0.10 1.00 7.89 -2.39 -0.02 0.98 16 32 H 0.10 2.98 7.42 -2.39 -0.02 2.97 16 33 H 0.16 2.38 7.59 -2.39 -0.02 2.37 16 34 H 0.05 1.50 7.18 -2.39 -0.02 1.48 16 35 H 0.12 1.67 7.45 -2.39 -0.02 1.65 16 36 H 0.11 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.03 1.09 6.52 -2.39 -0.02 1.08 16 40 H 0.24 16.45 8.31 -92.71 -0.77 15.68 16 41 H 0.00 -0.23 7.33 -2.39 -0.02 -0.25 16 42 H -0.01 -0.69 6.66 -2.39 -0.02 -0.71 16 43 H 0.15 2.78 7.26 -2.39 -0.02 2.76 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.07 2.26 7.67 -2.39 -0.02 2.24 16 Total: -1.00 -102.60 373.52 3.16 -99.44 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.96 Total: 13.90 kcal Atomic # 6 Polarization: 30.03 SS G_CDS: 6.76 Total: 36.79 kcal Atomic # 7 Polarization: -139.26 SS G_CDS: -6.49 Total: -145.75 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -0.10 Total: -56.74 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.03 Total: 52.37 kcal Total: -102.60 3.16 -99.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188107675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.986 kcal (2) G-P(sol) polarization free energy of solvation -102.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds