Wall clock time and date at job start Fri Apr 10 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46896 * 111.00247 * 2 1 4 4 C 1.50703 * 109.47254 * 66.04585 * 3 2 1 5 5 O 1.21293 * 119.99482 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99729 * 180.27555 * 6 4 3 8 8 H 1.08002 * 120.00496 * 359.72414 * 7 6 4 9 9 C 1.38958 * 120.00096 * 179.72242 * 7 6 4 10 10 N 1.31414 * 119.99347 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47438 * 59.99738 * 11 9 7 13 13 H 1.48504 * 109.46883 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46866 * 299.99617 * 11 9 7 15 15 C 1.46897 * 111.00011 * 236.04649 * 2 1 3 16 16 H 1.09001 * 110.89156 * 61.53148 * 15 2 1 17 17 C 1.55161 * 111.00718 * 297.60476 * 15 2 1 18 18 C 1.54326 * 102.94504 * 206.42527 * 17 15 2 19 19 N 1.47025 * 107.26890 * 22.19142 * 18 17 15 20 20 C 1.34781 * 125.64522 * 181.09883 * 19 18 17 21 21 O 1.21610 * 120.00015 * 179.97438 * 20 19 18 22 22 C 1.47101 * 119.99954 * 359.95269 * 20 19 18 23 23 C 1.33000 * 120.00032 * 179.97438 * 22 20 19 24 24 C 1.51403 * 136.31175 * 359.63914 * 23 22 20 25 25 C 1.53381 * 87.51399 * 206.05402 * 24 23 22 26 26 C 1.51397 * 136.31822 * 180.02562 * 23 22 20 27 27 C 1.47422 * 108.70519 * 1.05853 * 19 18 17 28 28 H 1.09011 * 109.47115 * 59.99935 * 1 2 3 29 29 H 1.08996 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47119 * 299.99991 * 1 2 3 31 31 H 1.08998 * 109.47322 * 306.04588 * 3 2 1 32 32 H 1.09002 * 109.47668 * 186.04784 * 3 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 34 34 H 0.97004 * 119.99790 * 179.97438 * 10 9 7 35 35 H 1.08999 * 110.71654 * 324.78781 * 17 15 2 36 36 H 1.08994 * 110.71950 * 88.06271 * 17 15 2 37 37 H 1.09000 * 109.88298 * 262.77681 * 18 17 15 38 38 H 1.09000 * 109.88245 * 141.60834 * 18 17 15 39 39 H 1.08004 * 120.00168 * 0.02562 * 22 20 19 40 40 H 1.08999 * 113.56427 * 320.62951 * 24 23 22 41 41 H 1.08994 * 113.56567 * 91.36788 * 24 23 22 42 42 H 1.09003 * 113.96711 * 220.29579 * 25 24 23 43 43 H 1.08998 * 113.71369 * 88.80771 * 25 24 23 44 44 H 1.09006 * 113.56280 * 268.63517 * 26 23 22 45 45 H 1.09006 * 113.56174 * 39.28925 * 26 23 22 46 46 H 1.08998 * 110.36453 * 217.03224 * 27 19 18 47 47 H 1.09002 * 110.36155 * 94.71068 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0046 1.4455 2.1407 6 7 2.0180 3.3202 1.5233 7 6 1.6967 3.9329 2.7069 8 1 1.1344 3.3970 3.4572 9 6 2.0946 5.2435 2.9412 10 7 2.7793 5.8954 2.0283 11 14 1.6575 6.0782 4.5541 12 1 2.2503 5.3163 5.6824 13 1 2.1932 7.4633 4.5557 14 1 0.1808 6.1191 4.7059 15 6 1.9954 -0.7660 -1.1376 16 1 1.6815 -0.3232 -2.0829 17 6 1.5681 -2.2551 -1.0509 18 6 2.6861 -2.9813 -1.8282 19 7 3.8634 -2.1006 -1.8242 20 6 5.0439 -2.3648 -2.4185 21 8 5.9526 -1.5595 -2.3505 22 6 5.2334 -3.6275 -3.1489 23 6 6.3982 -3.8880 -3.7357 24 6 7.7281 -3.1813 -3.8911 25 6 7.9289 -3.9854 -5.1817 26 6 6.9837 -5.0205 -4.5524 27 6 3.5385 -0.8804 -1.0635 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 2.5234 3.8013 0.8495 34 1 3.0568 6.8104 2.1917 35 1 1.5404 -2.5885 -0.0135 36 1 0.6021 -2.4077 -1.5321 37 1 2.3650 -3.1662 -2.8533 38 1 2.9268 -3.9242 -1.3371 39 1 4.4264 -4.3428 -3.2094 40 1 7.6344 -2.1083 -4.0584 41 1 8.4460 -3.4267 -3.1086 42 1 8.9470 -4.3477 -5.3238 43 1 7.5219 -3.4997 -6.0686 44 1 7.4973 -5.7709 -3.9513 45 1 6.2792 -5.4563 -5.2609 46 1 4.0060 -0.0103 -1.5244 47 1 3.8620 -0.9819 -0.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189611590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:32 Heat of formation + Delta-G solvation = -12.004216 kcal Electronic energy + Delta-G solvation = -26655.349858 eV Core-core repulsion = 22839.746296 eV Total energy + Delta-G solvation = -3815.603562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32453 -39.17020 -38.41655 -37.45195 -35.41576 -33.80316 -31.61037 -31.23012 -30.59234 -28.88419 -27.82824 -26.10115 -25.02650 -24.53308 -23.13011 -22.66326 -20.31523 -20.00023 -19.07463 -18.05546 -17.79997 -17.39724 -16.69052 -15.98486 -15.85636 -15.48896 -15.08989 -14.75818 -14.59842 -14.49734 -14.16990 -13.82300 -13.65911 -13.34497 -13.03699 -12.96929 -12.79219 -12.58546 -12.24805 -12.12067 -12.01428 -11.78764 -11.49964 -11.37593 -11.32215 -11.23215 -11.03890 -10.93393 -10.82752 -10.73571 -10.42139 -10.18931 -9.81222 -9.48716 -9.44639 -8.69971 -8.46521 -7.97228 -7.86939 -6.39014 -3.79891 1.12650 2.79929 3.18159 3.21856 3.27558 3.31768 3.88581 3.92443 4.01732 4.14738 4.24582 4.36253 4.42917 4.54064 4.75420 4.84623 4.88756 5.08156 5.16934 5.17721 5.21374 5.27816 5.29467 5.34042 5.38907 5.47275 5.61260 5.61958 5.67401 5.73063 5.80795 5.86574 5.91054 5.91555 5.93789 5.96663 6.08321 6.19381 6.30228 6.36270 6.54291 7.21007 7.34112 7.44501 7.57431 8.08408 8.11402 8.64234 9.20368 9.56940 10.08653 10.78632 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002291 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.716651 B =12216.279933 C =13398.653163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.507 5.507 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.068 3.932 16 H 0.054 0.946 17 C -0.123 4.123 18 C 0.104 3.896 19 N -0.616 5.616 20 C 0.565 3.435 21 O -0.540 6.540 22 C -0.195 4.195 23 C -0.063 4.063 24 C -0.107 4.107 25 C -0.143 4.143 26 C -0.108 4.108 27 C 0.113 3.887 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -20.850 -15.688 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.072 0.928 17 C -0.161 4.161 18 C -0.020 4.020 19 N -0.350 5.350 20 C 0.356 3.644 21 O -0.419 6.419 22 C -0.215 4.215 23 C -0.065 4.065 24 C -0.144 4.144 25 C -0.180 4.180 26 C -0.145 4.145 27 C -0.009 4.009 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.388 -20.855 -14.679 25.878 hybrid contribution -0.314 1.155 -0.421 1.269 sum 4.073 -19.701 -15.100 25.154 Atomic orbital electron populations 1.22548 0.86203 1.01571 1.02141 1.61617 1.08874 1.12893 1.39698 1.21936 1.00872 0.88774 0.97361 1.19674 0.85539 0.82905 0.88866 1.90475 1.43991 1.64631 1.47143 1.41859 1.49432 1.10767 1.17941 1.19642 1.33034 0.95587 0.94595 0.87947 1.25271 0.96805 0.96684 0.99231 1.69610 1.37849 1.12355 1.34453 0.85916 0.78837 0.77917 0.81525 1.19882 1.21009 1.19949 1.22786 0.94014 0.94329 0.93017 0.92774 1.22703 0.97379 0.93978 1.02033 1.22065 0.85401 0.94016 1.00506 1.48279 1.12501 1.20670 1.53531 1.18064 0.80797 0.86831 0.78700 1.90794 1.40573 1.49295 1.61229 1.21555 0.98420 0.98123 1.03438 1.23493 0.94437 0.97584 0.90991 1.22234 0.93812 1.01182 0.97131 1.22729 1.00041 0.97638 0.97605 1.22348 0.98360 0.95872 0.97886 1.22256 0.94258 0.87295 0.97122 0.96674 0.92024 0.88285 0.93339 0.89282 0.77473 0.91822 0.88986 0.90069 0.91412 0.91087 0.85074 0.89429 0.88343 0.90362 0.89729 0.88090 0.90408 0.90352 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.05 60.06 0.54 0.90 16 2 N -0.51 -8.19 4.40 -233.75 -1.03 -9.22 16 3 C 0.04 0.76 5.32 -4.98 -0.03 0.73 16 4 C 0.44 10.51 7.51 -10.98 -0.08 10.42 16 5 O -0.58 -15.39 13.88 5.55 0.08 -15.32 16 6 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 10 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 11 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.07 0.87 2.71 -65.56 -0.18 0.69 16 16 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.12 -1.20 5.37 -24.89 -0.13 -1.33 16 18 C 0.10 0.91 6.06 -3.06 -0.02 0.89 16 19 N -0.62 -7.56 3.33 -171.91 -0.57 -8.13 16 20 C 0.56 7.63 7.80 -12.66 -0.10 7.53 16 21 O -0.54 -9.23 15.41 5.27 0.08 -9.14 16 22 C -0.19 -1.96 9.54 -37.80 -0.36 -2.32 16 23 C -0.06 -0.59 6.93 -100.49 -0.70 -1.28 16 24 C -0.11 -0.99 6.99 -27.56 -0.19 -1.18 16 25 C -0.14 -0.92 8.17 -26.20 -0.21 -1.14 16 26 C -0.11 -0.66 7.95 -27.42 -0.22 -0.88 16 27 C 0.11 1.56 5.32 -2.53 -0.01 1.55 16 28 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.06 0.79 7.02 -51.93 -0.36 0.43 16 30 H 0.10 1.89 5.88 -51.93 -0.31 1.59 16 31 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.09 1.51 6.68 -51.93 -0.35 1.17 16 33 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.13 0.96 7.38 -52.48 -0.39 0.57 16 40 H 0.09 0.99 7.49 -51.93 -0.39 0.60 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -33.27 381.30 -9.50 -42.77 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.51 Total: 9.09 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.93 Total: 6.56 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.93 Total: -55.93 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.16 Total: -24.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.27 -9.50 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189611590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.764 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds