Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46896 * 111.00247 * 2 1 4 4 C 1.50703 * 109.47254 * 66.04585 * 3 2 1 5 5 O 1.21293 * 119.99482 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99729 * 180.27555 * 6 4 3 8 8 H 1.08002 * 120.00496 * 359.72414 * 7 6 4 9 9 C 1.38958 * 120.00096 * 179.72242 * 7 6 4 10 10 N 1.31414 * 119.99347 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47438 * 59.99738 * 11 9 7 13 13 H 1.48504 * 109.46883 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46866 * 299.99617 * 11 9 7 15 15 C 1.46897 * 111.00011 * 236.04649 * 2 1 3 16 16 H 1.09001 * 110.89156 * 61.53148 * 15 2 1 17 17 C 1.55161 * 111.00718 * 297.60476 * 15 2 1 18 18 C 1.54326 * 102.94504 * 206.42527 * 17 15 2 19 19 N 1.47025 * 107.26890 * 22.19142 * 18 17 15 20 20 C 1.34781 * 125.64522 * 181.09883 * 19 18 17 21 21 O 1.21610 * 120.00015 * 179.97438 * 20 19 18 22 22 C 1.47101 * 119.99954 * 359.95269 * 20 19 18 23 23 C 1.33000 * 120.00032 * 179.97438 * 22 20 19 24 24 C 1.51403 * 136.31175 * 359.63914 * 23 22 20 25 25 C 1.53381 * 87.51399 * 206.05402 * 24 23 22 26 26 C 1.51397 * 136.31822 * 180.02562 * 23 22 20 27 27 C 1.47422 * 108.70519 * 1.05853 * 19 18 17 28 28 H 1.09011 * 109.47115 * 59.99935 * 1 2 3 29 29 H 1.08996 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47119 * 299.99991 * 1 2 3 31 31 H 1.08998 * 109.47322 * 306.04588 * 3 2 1 32 32 H 1.09002 * 109.47668 * 186.04784 * 3 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 34 34 H 0.97004 * 119.99790 * 179.97438 * 10 9 7 35 35 H 1.08999 * 110.71654 * 324.78781 * 17 15 2 36 36 H 1.08994 * 110.71950 * 88.06271 * 17 15 2 37 37 H 1.09000 * 109.88298 * 262.77681 * 18 17 15 38 38 H 1.09000 * 109.88245 * 141.60834 * 18 17 15 39 39 H 1.08004 * 120.00168 * 0.02562 * 22 20 19 40 40 H 1.08999 * 113.56427 * 320.62951 * 24 23 22 41 41 H 1.08994 * 113.56567 * 91.36788 * 24 23 22 42 42 H 1.09003 * 113.96711 * 220.29579 * 25 24 23 43 43 H 1.08998 * 113.71369 * 88.80771 * 25 24 23 44 44 H 1.09006 * 113.56280 * 268.63517 * 26 23 22 45 45 H 1.09006 * 113.56174 * 39.28925 * 26 23 22 46 46 H 1.08998 * 110.36453 * 217.03224 * 27 19 18 47 47 H 1.09002 * 110.36155 * 94.71068 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0046 1.4455 2.1407 6 7 2.0180 3.3202 1.5233 7 6 1.6967 3.9329 2.7069 8 1 1.1344 3.3970 3.4572 9 6 2.0946 5.2435 2.9412 10 7 2.7793 5.8954 2.0283 11 14 1.6575 6.0782 4.5541 12 1 2.2503 5.3163 5.6824 13 1 2.1932 7.4633 4.5557 14 1 0.1808 6.1191 4.7059 15 6 1.9954 -0.7660 -1.1376 16 1 1.6815 -0.3232 -2.0829 17 6 1.5681 -2.2551 -1.0509 18 6 2.6861 -2.9813 -1.8282 19 7 3.8634 -2.1006 -1.8242 20 6 5.0439 -2.3648 -2.4185 21 8 5.9526 -1.5595 -2.3505 22 6 5.2334 -3.6275 -3.1489 23 6 6.3982 -3.8880 -3.7357 24 6 7.7281 -3.1813 -3.8911 25 6 7.9289 -3.9854 -5.1817 26 6 6.9837 -5.0205 -4.5524 27 6 3.5385 -0.8804 -1.0635 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 2.5234 3.8013 0.8495 34 1 3.0568 6.8104 2.1917 35 1 1.5404 -2.5885 -0.0135 36 1 0.6021 -2.4077 -1.5321 37 1 2.3650 -3.1662 -2.8533 38 1 2.9268 -3.9242 -1.3371 39 1 4.4264 -4.3428 -3.2094 40 1 7.6344 -2.1083 -4.0584 41 1 8.4460 -3.4267 -3.1086 42 1 8.9470 -4.3477 -5.3238 43 1 7.5219 -3.4997 -6.0686 44 1 7.4973 -5.7709 -3.9513 45 1 6.2792 -5.4563 -5.2609 46 1 4.0060 -0.0103 -1.5244 47 1 3.8620 -0.9819 -0.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189611590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = -35.241610 kcal Electronic energy + Delta-G solvation = -26656.357507 eV Core-core repulsion = 22839.746296 eV Total energy + Delta-G solvation = -3816.611211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31347 -40.40619 -39.59955 -38.64620 -36.72605 -35.78393 -33.29518 -32.52449 -31.47746 -29.87323 -29.31577 -26.75915 -26.67961 -25.70153 -24.27887 -23.41830 -21.44476 -21.05054 -20.67276 -19.85027 -18.83127 -18.35635 -17.81320 -17.48954 -16.67003 -16.57579 -16.33529 -16.21778 -16.02933 -15.59754 -15.44458 -15.33251 -15.01831 -14.60121 -14.25350 -13.98792 -13.81685 -13.59621 -13.39679 -13.33199 -13.09056 -12.91848 -12.80611 -12.66052 -12.59001 -12.44440 -12.34440 -12.13719 -11.91592 -11.89295 -11.82468 -11.50480 -11.45484 -10.75132 -10.29777 -10.24166 -10.01366 -9.64183 -9.27094 -8.46718 -5.95718 0.34250 1.39155 1.40589 1.51981 1.85946 2.04003 2.25384 2.28202 2.74943 3.19173 3.22668 3.35291 3.51905 3.57914 3.66627 3.82967 4.03578 4.11340 4.16167 4.25655 4.27924 4.31203 4.38235 4.47058 4.58046 4.59935 4.60690 4.72204 4.74205 4.77276 4.83213 4.87072 4.89883 5.00237 5.04321 5.14678 5.18258 5.26162 5.33893 5.35047 5.40475 5.66201 5.83589 6.03303 6.18134 6.51411 6.59453 7.11976 7.12713 7.55208 8.10553 8.70618 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002291 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.716651 B =12216.279933 C =13398.653163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.443 3.557 5 O -0.610 6.610 6 N -0.576 5.576 7 C -0.332 4.332 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.269 1.269 15 C 0.073 3.927 16 H 0.067 0.933 17 C -0.115 4.115 18 C 0.102 3.898 19 N -0.616 5.616 20 C 0.553 3.447 21 O -0.592 6.592 22 C -0.205 4.205 23 C -0.069 4.069 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.092 4.092 27 C 0.113 3.887 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.394 0.606 34 H 0.277 0.723 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.165 0.835 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -23.325 -17.364 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.248 5.248 3 C -0.077 4.077 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.195 1.195 15 C -0.036 4.036 16 H 0.085 0.915 17 C -0.153 4.153 18 C -0.019 4.019 19 N -0.349 5.349 20 C 0.346 3.654 21 O -0.475 6.475 22 C -0.225 4.225 23 C -0.071 4.071 24 C -0.161 4.161 25 C -0.171 4.171 26 C -0.128 4.128 27 C -0.011 4.011 28 H 0.048 0.952 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.182 0.818 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.703 -23.363 -16.379 28.772 hybrid contribution -0.066 1.893 0.085 1.896 sum 3.637 -21.470 -16.295 27.198 Atomic orbital electron populations 1.22444 0.85638 1.03105 1.00736 1.61549 1.09501 1.11683 1.42099 1.21755 1.01509 0.90009 0.94387 1.20642 0.83828 0.82173 0.90282 1.90453 1.45022 1.65221 1.48882 1.41953 1.50124 1.11650 1.17581 1.19642 1.34443 0.96540 0.95492 0.90054 1.26093 0.96252 0.96702 1.02527 1.69684 1.38055 1.12747 1.35881 0.84962 0.78713 0.77198 0.77300 1.19738 1.19608 1.19454 1.22802 0.92799 0.95941 0.92051 0.91509 1.22728 0.99159 0.91224 1.02147 1.22327 0.83460 0.93777 1.02370 1.48385 1.13353 1.20530 1.52610 1.18807 0.80367 0.87637 0.78551 1.90766 1.42290 1.51164 1.63278 1.21629 0.99973 0.97072 1.03818 1.23972 0.93944 0.98919 0.90261 1.22364 0.94733 0.99792 0.99204 1.22724 1.01408 0.96982 0.96001 1.22370 0.98028 0.94986 0.97421 1.22081 0.95270 0.87809 0.95889 0.95193 0.89019 0.92430 0.91479 0.88555 0.77228 0.91347 0.89954 0.87141 0.88492 0.89072 0.81766 0.92587 0.88329 0.88620 0.89637 0.86317 0.88373 0.92208 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.05 127.69 1.16 2.00 16 2 N -0.52 -16.65 4.40 -893.45 -3.93 -20.58 16 3 C 0.05 2.00 5.32 85.56 0.46 2.45 16 4 C 0.44 21.65 7.51 87.66 0.66 22.31 16 5 O -0.61 -33.71 13.88 -3.07 -0.04 -33.75 16 6 N -0.58 -30.53 5.29 -306.98 -1.62 -32.15 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 10 N -0.92 -51.30 13.05 21.67 0.28 -51.02 16 11 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.07 1.74 2.71 46.31 0.13 1.87 16 16 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 17 C -0.11 -1.88 5.37 31.78 0.17 -1.71 16 18 C 0.10 1.46 6.06 86.73 0.53 1.98 16 19 N -0.62 -14.55 3.33 -816.04 -2.71 -17.27 16 20 C 0.55 14.92 7.80 86.57 0.67 15.60 16 21 O -0.59 -21.37 15.41 -4.06 -0.06 -21.43 16 22 C -0.20 -3.74 9.54 23.43 0.22 -3.52 16 23 C -0.07 -1.17 6.93 -17.18 -0.12 -1.29 16 24 C -0.12 -2.30 6.99 30.06 0.21 -2.09 16 25 C -0.13 -1.46 8.17 30.94 0.25 -1.21 16 26 C -0.09 -0.82 7.95 30.15 0.24 -0.58 16 27 C 0.11 3.16 5.32 86.86 0.46 3.63 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 2.13 7.02 -2.39 -0.02 2.11 16 30 H 0.06 2.23 5.88 -2.39 -0.01 2.21 16 31 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 32 H 0.10 3.38 6.68 -2.39 -0.02 3.36 16 33 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 34 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.23 8.01 -2.39 -0.02 1.21 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.16 1.77 7.38 -2.91 -0.02 1.75 16 40 H 0.06 1.38 7.49 -2.39 -0.02 1.36 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.06 1.86 7.68 -2.39 -0.02 1.84 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.71 381.30 0.49 -76.22 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.24 Total: 33.50 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.31 Total: 20.61 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -7.98 Total: -121.01 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -0.11 Total: -55.18 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.71 0.49 -76.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189611590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.979 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds