Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99949 * 2 1 4 4 C 1.50703 * 109.47489 * 293.95442 * 3 2 1 5 5 O 1.21298 * 119.99332 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00583 * 180.02562 * 4 3 2 7 7 C 1.37091 * 120.00178 * 180.27730 * 6 4 3 8 8 H 1.07996 * 119.99939 * 359.72048 * 7 6 4 9 9 C 1.38951 * 119.99799 * 179.72288 * 7 6 4 10 10 N 1.31415 * 119.99901 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00167 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46869 * 90.00121 * 11 9 7 13 13 H 1.48506 * 109.46926 * 209.99769 * 11 9 7 14 14 H 1.48494 * 109.47220 * 329.99922 * 11 9 7 15 15 C 1.46906 * 111.00391 * 123.95315 * 2 1 3 16 16 H 1.09003 * 110.88405 * 295.34959 * 15 2 1 17 17 C 1.55149 * 111.00595 * 171.46541 * 15 2 1 18 18 C 1.54326 * 102.94178 * 206.42582 * 17 15 2 19 19 N 1.47023 * 107.27030 * 22.19263 * 18 17 15 20 20 C 1.34777 * 125.64924 * 181.09838 * 19 18 17 21 21 O 1.21614 * 120.00063 * 175.79611 * 20 19 18 22 22 C 1.47100 * 119.99859 * 355.80779 * 20 19 18 23 23 C 1.32611 * 124.62062 * 184.80090 * 22 20 19 24 24 C 1.51113 * 110.76043 * 179.83575 * 23 22 20 25 25 C 1.54576 * 104.90112 * 343.80433 * 24 23 22 26 26 C 1.51116 * 124.62376 * 5.09179 * 22 20 19 27 27 C 1.47474 * 108.72375 * 1.02369 * 19 18 17 28 28 H 1.08994 * 109.47128 * 59.99892 * 1 2 3 29 29 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47122 * 300.00162 * 1 2 3 31 31 H 1.09007 * 109.46916 * 173.95609 * 3 2 1 32 32 H 1.08995 * 109.47378 * 53.95836 * 3 2 1 33 33 H 0.97005 * 119.99345 * 359.97438 * 6 4 3 34 34 H 0.97000 * 120.00428 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.71924 * 324.78165 * 17 15 2 36 36 H 1.09000 * 110.72379 * 88.06105 * 17 15 2 37 37 H 1.08997 * 109.88583 * 141.60568 * 18 17 15 38 38 H 1.09003 * 109.88393 * 262.77562 * 18 17 15 39 39 H 1.08007 * 124.61915 * 359.97438 * 23 22 20 40 40 H 1.08994 * 110.52142 * 224.84546 * 24 23 22 41 41 H 1.09004 * 110.24109 * 102.61750 * 24 23 22 42 42 H 1.08993 * 110.98120 * 266.70504 * 25 24 23 43 43 H 1.09004 * 110.97765 * 142.90632 * 25 24 23 44 44 H 1.08999 * 110.35906 * 315.44688 * 26 22 20 45 45 H 1.08995 * 110.36077 * 77.76016 * 26 22 20 46 46 H 1.08996 * 110.40675 * 217.08643 * 27 19 18 47 47 H 1.09003 * 110.34607 * 94.75030 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1411 6 7 2.0188 3.3199 -1.5237 7 6 1.6878 3.9364 -2.7026 8 1 1.1248 3.4008 -3.4526 9 6 2.0766 5.2505 -2.9324 10 7 1.7597 5.8414 -4.0626 11 14 3.0498 6.1771 -1.6349 12 1 4.5023 5.9691 -1.8632 13 1 2.7374 7.6263 -1.7230 14 1 2.6833 5.6728 -0.2872 15 6 1.9955 -0.7660 1.1376 16 1 1.7278 -0.2924 2.0822 17 6 3.5321 -0.9475 1.0224 18 6 3.7866 -2.2487 1.8122 19 7 2.5202 -2.9949 1.8437 20 6 2.3206 -4.1779 2.4579 21 8 1.2086 -4.6695 2.4841 22 6 3.4479 -4.8743 3.0968 23 6 3.3756 -6.0795 3.6453 24 6 4.7164 -6.4942 4.2056 25 6 5.7346 -5.5308 3.5542 26 6 4.8445 -4.3112 3.2232 27 6 1.5036 -2.2342 1.0935 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.0798 1.3443 0.1082 32 1 1.5612 1.9273 0.8309 33 1 2.5242 3.8010 -0.8499 34 1 2.0308 6.7588 -4.2230 35 1 3.8295 -1.0646 -0.0197 36 1 4.0551 -0.1089 1.4819 37 1 4.5536 -2.8411 1.3135 38 1 4.1016 -2.0101 2.8281 39 1 2.4810 -6.6834 3.6841 40 1 4.9418 -7.5253 3.9334 41 1 4.7243 -6.3784 5.2895 42 1 6.1565 -5.9638 2.6473 43 1 6.5214 -5.2602 4.2584 44 1 5.1570 -3.8576 2.2827 45 1 4.8871 -3.5802 4.0306 46 1 0.5302 -2.3228 1.5757 47 1 1.4510 -2.5860 0.0632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189632649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = -25.675992 kcal Electronic energy + Delta-G solvation = -27023.689522 eV Core-core repulsion = 23207.493107 eV Total energy + Delta-G solvation = -3816.196415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66085 -39.12413 -38.23583 -37.53519 -35.60470 -33.90114 -31.69527 -31.23191 -30.11887 -29.49214 -28.49631 -27.40990 -25.50727 -24.11051 -23.09134 -21.34044 -21.08901 -20.21685 -19.35610 -18.71765 -18.26867 -17.11651 -16.98091 -16.07012 -15.97116 -15.75366 -15.14813 -15.00034 -14.60720 -14.15078 -14.10614 -13.79544 -13.75074 -13.28938 -13.12309 -12.99012 -12.77029 -12.68748 -12.46270 -12.34651 -12.22003 -12.04388 -11.95244 -11.68173 -11.57875 -11.46839 -11.19609 -11.01565 -10.89927 -10.84331 -10.61553 -10.12289 -9.99025 -9.55589 -9.38147 -8.77283 -8.61190 -8.19924 -8.02610 -6.32266 -3.83725 1.07491 2.70515 3.00466 3.02893 3.04820 3.13457 3.71777 3.85062 3.98096 4.08674 4.12640 4.30602 4.43818 4.55011 4.63756 4.74458 4.82423 4.88670 5.00872 5.10968 5.17406 5.22074 5.22686 5.28164 5.36931 5.44498 5.48808 5.52791 5.58794 5.61282 5.69610 5.74619 5.75257 5.80878 5.82457 5.86388 5.92583 6.02636 6.15583 6.17570 6.49177 7.06883 7.23877 7.29587 7.56999 7.95306 8.13388 8.58815 8.94155 9.41054 9.81989 10.80823 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.002322 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.149000 B =12054.986127 C =12779.568658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.506 5.506 3 C 0.043 3.957 4 C 0.453 3.547 5 O -0.558 6.558 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.055 0.945 17 C -0.130 4.130 18 C 0.099 3.901 19 N -0.612 5.612 20 C 0.581 3.419 21 O -0.543 6.543 22 C -0.189 4.189 23 C -0.076 4.076 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.102 4.102 27 C 0.116 3.884 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.910 -18.565 19.525 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.196 1.196 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.168 4.168 18 C -0.024 4.024 19 N -0.346 5.346 20 C 0.371 3.629 21 O -0.422 6.422 22 C -0.191 4.191 23 C -0.096 4.096 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.139 4.139 27 C -0.006 4.006 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.202 0.798 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.041 -19.324 18.411 28.180 hybrid contribution 0.501 1.456 1.707 2.299 sum 9.542 -17.868 20.118 28.549 Atomic orbital electron populations 1.22614 0.86148 1.01944 1.02289 1.61619 1.08997 1.12653 1.39804 1.21913 1.00921 0.88941 0.97076 1.19600 0.85132 0.82493 0.88912 1.90534 1.42580 1.64094 1.46750 1.42204 1.50976 1.11909 1.17973 1.19420 1.33785 0.96145 0.93901 0.86251 1.25044 0.97919 0.96504 0.96758 1.69621 1.45654 1.13486 1.23353 0.86673 0.80894 0.80507 0.81306 1.19604 1.20216 1.19560 1.22783 0.94950 0.93439 0.92974 0.92690 1.22816 0.95452 0.96299 1.02261 1.22464 0.86610 0.92705 1.00636 1.48266 1.12765 1.20451 1.53100 1.17642 0.87992 0.79411 0.77812 1.90803 1.24885 1.66009 1.60506 1.21749 0.95582 0.97501 1.04313 1.24043 0.98712 0.94810 0.92015 1.21480 0.91867 1.00345 1.00706 1.22459 0.97354 0.95362 1.01062 1.21709 0.90865 0.98421 1.02857 1.22233 0.91763 0.89498 0.97137 0.88163 0.91811 0.96450 0.89131 0.93279 0.79761 0.91618 0.88768 0.89859 0.90335 0.91028 0.84488 0.90188 0.89698 0.90746 0.90492 0.89519 0.90265 0.90356 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.01 60.06 0.54 0.81 16 2 N -0.51 -7.70 4.40 -233.75 -1.03 -8.73 16 3 C 0.04 0.68 5.34 -4.98 -0.03 0.66 16 4 C 0.45 9.95 7.51 -10.99 -0.08 9.87 16 5 O -0.56 -14.49 13.89 5.54 0.08 -14.41 16 6 N -0.59 -13.72 5.09 -10.96 -0.06 -13.77 16 7 C -0.30 -8.45 10.16 -14.94 -0.15 -8.60 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 10 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 11 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 15 C 0.07 0.80 2.71 -65.57 -0.18 0.63 16 16 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 17 C -0.13 -1.22 5.46 -24.90 -0.14 -1.36 16 18 C 0.10 0.82 5.20 -3.06 -0.02 0.80 16 19 N -0.61 -6.98 3.33 -171.87 -0.57 -7.55 16 20 C 0.58 7.45 7.82 -12.67 -0.10 7.35 16 21 O -0.54 -8.95 17.01 5.27 0.09 -8.86 16 22 C -0.19 -1.80 6.05 -102.73 -0.62 -2.42 16 23 C -0.08 -0.63 10.44 -36.01 -0.38 -1.01 16 24 C -0.11 -0.58 6.80 -26.85 -0.18 -0.76 16 25 C -0.12 -0.63 7.16 -25.08 -0.18 -0.81 16 26 C -0.10 -0.66 4.83 -26.85 -0.13 -0.79 16 27 C 0.12 1.44 5.23 -2.50 -0.01 1.43 16 28 H 0.10 1.90 5.88 -51.93 -0.31 1.60 16 29 H 0.06 0.89 6.86 -51.93 -0.36 0.53 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 1.22 6.86 -51.92 -0.36 0.86 16 32 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 37 H 0.08 0.55 5.96 -51.93 -0.31 0.24 16 38 H 0.07 0.48 6.98 -51.93 -0.36 0.12 16 39 H 0.14 1.17 8.04 -52.48 -0.42 0.75 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.51 4.95 -51.93 -0.26 0.26 16 45 H 0.08 0.46 7.69 -51.93 -0.40 0.06 16 46 H 0.08 1.03 7.78 -51.93 -0.40 0.63 16 47 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -34.25 368.95 -8.79 -43.04 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.18 Total: 8.34 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.75 Total: 6.81 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.88 Total: -54.77 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.25 -8.79 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189632649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.361 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds