Wall clock time and date at job start Fri Apr 10 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99992 * 2 1 4 4 C 1.50698 * 109.46901 * 293.95062 * 3 2 1 5 5 O 1.21296 * 120.00180 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00016 * 179.97438 * 4 3 2 7 7 C 1.37093 * 119.99829 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00458 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99986 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99688 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00347 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46866 * 59.99637 * 11 9 7 13 13 H 1.48497 * 109.47122 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47141 * 300.00151 * 11 9 7 15 15 C 1.46898 * 111.00251 * 123.95202 * 2 1 3 16 16 H 1.09006 * 110.88328 * 308.56077 * 15 2 1 17 17 C 1.55155 * 111.00657 * 72.43896 * 15 2 1 18 18 C 1.54365 * 102.92429 * 153.54882 * 17 15 2 19 19 N 1.47027 * 107.28940 * 337.86384 * 18 17 15 20 20 C 1.34774 * 125.65002 * 178.87183 * 19 18 17 21 21 O 1.21609 * 120.00041 * 185.59555 * 20 19 18 22 22 C 1.47099 * 119.99949 * 5.59171 * 20 19 18 23 23 C 1.32613 * 124.61686 * 174.43491 * 22 20 19 24 24 C 1.51116 * 110.75534 * 179.84717 * 23 22 20 25 25 C 1.54576 * 104.90216 * 343.79864 * 24 23 22 26 26 C 1.51116 * 124.62323 * 354.73660 * 22 20 19 27 27 C 1.47423 * 108.69970 * 358.90887 * 19 18 17 28 28 H 1.08997 * 109.47292 * 55.02087 * 1 2 3 29 29 H 1.08999 * 109.47589 * 295.01187 * 1 2 3 30 30 H 1.09004 * 109.47000 * 175.01567 * 1 2 3 31 31 H 1.08996 * 109.47212 * 53.95093 * 3 2 1 32 32 H 1.09000 * 109.47132 * 173.95535 * 3 2 1 33 33 H 0.97000 * 120.00081 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99371 * 180.02562 * 10 9 7 35 35 H 1.09002 * 110.71962 * 271.94599 * 17 15 2 36 36 H 1.09001 * 110.71965 * 35.21540 * 17 15 2 37 37 H 1.08995 * 109.90554 * 218.42091 * 18 17 15 38 38 H 1.09004 * 109.97794 * 97.34344 * 18 17 15 39 39 H 1.07998 * 124.62473 * 359.97438 * 23 22 20 40 40 H 1.09010 * 110.51725 * 224.84908 * 24 23 22 41 41 H 1.08992 * 110.15484 * 102.57185 * 24 23 22 42 42 H 1.08997 * 110.99028 * 266.71463 * 25 24 23 43 43 H 1.09005 * 111.01197 * 142.92360 * 25 24 23 44 44 H 1.08994 * 110.36079 * 315.43789 * 26 22 20 45 45 H 1.09003 * 110.36277 * 77.75572 * 26 22 20 46 46 H 1.09009 * 110.36452 * 265.29266 * 27 19 18 47 47 H 1.08998 * 110.36819 * 142.96896 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0180 3.3202 -1.5234 7 6 1.6914 3.9349 -2.7044 8 1 1.1284 3.3993 -3.4544 9 6 2.0847 5.2473 -2.9366 10 7 2.7701 5.8989 -2.0241 11 14 1.6391 6.0852 -4.5455 12 1 0.1618 6.1222 -4.6918 13 1 2.1710 7.4717 -4.5454 14 1 2.2298 5.3280 -5.6781 15 6 1.9954 -0.7659 1.1376 16 1 1.5420 -0.4350 2.0720 17 6 1.7868 -2.2889 0.9270 18 6 2.9236 -2.9122 1.7648 19 7 3.9634 -1.8850 1.9233 20 6 5.1129 -2.0305 2.6117 21 8 5.8560 -1.0797 2.7623 22 6 5.4686 -3.3393 3.1811 23 6 6.6193 -3.6123 3.7811 24 6 6.6512 -5.0485 4.2500 25 6 5.1769 -5.5115 4.2136 26 6 4.5752 -4.5578 3.1563 27 6 3.5400 -0.6691 1.2051 28 1 -0.3634 0.5891 -0.8420 29 1 -0.3634 0.4345 0.9313 30 1 -0.3633 -1.0238 -0.0893 31 1 1.5610 1.9274 0.8308 32 1 3.0797 1.3445 0.1082 33 1 2.5226 3.8017 -0.8493 34 1 3.0444 6.8151 -2.1861 35 1 0.8129 -2.6006 1.3046 36 1 1.8954 -2.5511 -0.1254 37 1 3.3343 -3.7787 1.2466 38 1 2.5451 -3.2105 2.7426 39 1 7.4231 -2.9041 3.9179 40 1 7.0433 -5.1103 5.2652 41 1 7.2551 -5.6516 3.5720 42 1 4.6993 -5.3705 5.1832 43 1 5.1011 -6.5498 3.8906 44 1 3.5552 -4.2858 3.4276 45 1 4.5953 -5.0229 2.1706 46 1 3.9634 -0.6550 0.2007 47 1 3.8406 0.2215 1.7570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189632651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:43 Heat of formation + Delta-G solvation = -33.607404 kcal Electronic energy + Delta-G solvation = -27083.129261 eV Core-core repulsion = 23266.588914 eV Total energy + Delta-G solvation = -3816.540347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58934 -39.01483 -38.09321 -37.43149 -35.49068 -33.81151 -31.29356 -31.10845 -30.01956 -29.40191 -28.12087 -27.77420 -24.91291 -24.46169 -23.10985 -21.31811 -20.97414 -20.27368 -19.06866 -18.63794 -17.81219 -17.06957 -16.83226 -16.20079 -15.77541 -15.62839 -15.10010 -14.73328 -14.57670 -14.23014 -13.91554 -13.73809 -13.61373 -13.40177 -13.11237 -12.95551 -12.70263 -12.60688 -12.33359 -12.19282 -12.00604 -11.95019 -11.64148 -11.51213 -11.44829 -11.30221 -11.05927 -11.01574 -10.88117 -10.76676 -10.42533 -10.19358 -10.03838 -9.45001 -9.32789 -8.69021 -8.46259 -7.97846 -7.88554 -6.39390 -3.80373 1.13841 2.78389 3.09694 3.21498 3.27313 3.31437 3.90049 3.93085 4.06331 4.17423 4.24163 4.37256 4.51779 4.57793 4.69447 4.84310 4.94644 5.04607 5.11483 5.16483 5.23809 5.26425 5.28380 5.37004 5.41070 5.47961 5.56211 5.61540 5.67079 5.70471 5.75322 5.77615 5.86875 5.89234 5.93081 5.97337 6.07988 6.21786 6.23934 6.29558 6.52306 7.19378 7.32215 7.39305 7.57020 8.03294 8.07929 8.63651 9.19853 9.56422 10.07997 10.78218 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002374 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.211812 B =11790.587780 C =12656.721413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.506 5.506 3 C 0.040 3.960 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.069 3.931 16 H 0.056 0.944 17 C -0.123 4.123 18 C 0.099 3.901 19 N -0.612 5.612 20 C 0.580 3.420 21 O -0.540 6.540 22 C -0.188 4.188 23 C -0.077 4.077 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.097 4.097 27 C 0.109 3.891 28 H 0.098 0.902 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -22.068 14.427 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.230 5.230 3 C -0.092 4.092 4 C 0.230 3.770 5 O -0.463 6.463 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.161 4.161 18 C -0.024 4.024 19 N -0.346 5.346 20 C 0.370 3.630 21 O -0.419 6.419 22 C -0.191 4.191 23 C -0.096 4.096 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.134 4.134 27 C -0.013 4.013 28 H 0.117 0.883 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.156 0.844 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.927 -21.995 13.531 25.989 hybrid contribution -0.109 1.274 0.375 1.333 sum 2.818 -20.721 13.906 25.113 Atomic orbital electron populations 1.22534 0.86160 1.02221 1.01446 1.61642 1.08916 1.12857 1.39615 1.21961 1.00928 0.88859 0.97401 1.19672 0.85538 0.82945 0.88868 1.90480 1.44005 1.64664 1.47113 1.41864 1.49344 1.10727 1.18038 1.19639 1.33024 0.95441 0.94787 0.87947 1.25272 0.96802 0.96681 0.99219 1.69611 1.37862 1.12294 1.34464 0.85915 0.78855 0.77925 0.81501 1.19942 1.21003 1.19884 1.22803 0.93903 0.94438 0.92959 0.92652 1.22730 0.97600 0.94104 1.01707 1.22435 0.88306 0.91684 0.99989 1.48238 1.19095 1.15472 1.51798 1.17644 0.79801 0.87954 0.77578 1.90817 1.50466 1.41018 1.59552 1.21754 0.98664 0.94255 1.04451 1.24048 0.96313 0.96797 0.92480 1.21480 0.97777 0.93152 1.01961 1.22461 0.95060 0.99303 0.99423 1.21629 0.99176 0.92691 0.99925 1.22354 0.93670 0.87728 0.97565 0.88350 0.96687 0.92018 0.93311 0.89183 0.77461 0.91808 0.90075 0.88956 0.90780 0.90966 0.84442 0.90192 0.89672 0.90845 0.90492 0.90002 0.90103 0.89801 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.09 60.06 0.55 0.92 16 2 N -0.51 -8.14 4.40 -233.75 -1.03 -9.17 16 3 C 0.04 0.71 5.24 -4.97 -0.03 0.69 16 4 C 0.44 10.47 7.47 -10.99 -0.08 10.39 16 5 O -0.58 -15.35 13.92 5.54 0.08 -15.28 16 6 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 11 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.07 0.87 2.73 -65.57 -0.18 0.69 16 16 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 17 C -0.12 -1.20 5.91 -24.88 -0.15 -1.35 16 18 C 0.10 0.87 5.24 -3.04 -0.02 0.85 16 19 N -0.61 -7.52 3.33 -171.88 -0.57 -8.09 16 20 C 0.58 7.97 7.81 -12.67 -0.10 7.87 16 21 O -0.54 -9.54 17.00 5.27 0.09 -9.45 16 22 C -0.19 -1.91 6.05 -102.73 -0.62 -2.54 16 23 C -0.08 -0.68 10.44 -36.01 -0.38 -1.06 16 24 C -0.11 -0.62 6.80 -26.85 -0.18 -0.81 16 25 C -0.12 -0.66 7.16 -25.08 -0.18 -0.84 16 26 C -0.10 -0.67 4.74 -26.85 -0.13 -0.79 16 27 C 0.11 1.50 4.93 -2.53 -0.01 1.48 16 28 H 0.10 1.88 5.81 -51.93 -0.30 1.58 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 31 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.09 1.53 6.27 -51.93 -0.33 1.20 16 33 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.55 6.61 -51.93 -0.34 0.21 16 38 H 0.07 0.51 6.18 -51.93 -0.32 0.19 16 39 H 0.14 1.28 8.04 -52.49 -0.42 0.86 16 40 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.50 5.43 -51.93 -0.28 0.22 16 45 H 0.08 0.50 7.33 -51.93 -0.38 0.12 16 46 H 0.08 1.26 7.98 -51.92 -0.41 0.85 16 47 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -33.46 372.20 -9.15 -42.60 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.22 Total: 8.65 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.74 Total: 7.48 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.93 Total: -55.82 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.17 Total: -24.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.46 -9.15 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189632651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.996 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds