Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99992 * 2 1 4 4 C 1.50698 * 109.46901 * 293.95062 * 3 2 1 5 5 O 1.21296 * 120.00180 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00016 * 179.97438 * 4 3 2 7 7 C 1.37093 * 119.99829 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00458 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99986 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99688 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00347 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46866 * 59.99637 * 11 9 7 13 13 H 1.48497 * 109.47122 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47141 * 300.00151 * 11 9 7 15 15 C 1.46898 * 111.00251 * 123.95202 * 2 1 3 16 16 H 1.09006 * 110.88328 * 308.56077 * 15 2 1 17 17 C 1.55155 * 111.00657 * 72.43896 * 15 2 1 18 18 C 1.54365 * 102.92429 * 153.54882 * 17 15 2 19 19 N 1.47027 * 107.28940 * 337.86384 * 18 17 15 20 20 C 1.34774 * 125.65002 * 178.87183 * 19 18 17 21 21 O 1.21609 * 120.00041 * 185.59555 * 20 19 18 22 22 C 1.47099 * 119.99949 * 5.59171 * 20 19 18 23 23 C 1.32613 * 124.61686 * 174.43491 * 22 20 19 24 24 C 1.51116 * 110.75534 * 179.84717 * 23 22 20 25 25 C 1.54576 * 104.90216 * 343.79864 * 24 23 22 26 26 C 1.51116 * 124.62323 * 354.73660 * 22 20 19 27 27 C 1.47423 * 108.69970 * 358.90887 * 19 18 17 28 28 H 1.08997 * 109.47292 * 55.02087 * 1 2 3 29 29 H 1.08999 * 109.47589 * 295.01187 * 1 2 3 30 30 H 1.09004 * 109.47000 * 175.01567 * 1 2 3 31 31 H 1.08996 * 109.47212 * 53.95093 * 3 2 1 32 32 H 1.09000 * 109.47132 * 173.95535 * 3 2 1 33 33 H 0.97000 * 120.00081 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99371 * 180.02562 * 10 9 7 35 35 H 1.09002 * 110.71962 * 271.94599 * 17 15 2 36 36 H 1.09001 * 110.71965 * 35.21540 * 17 15 2 37 37 H 1.08995 * 109.90554 * 218.42091 * 18 17 15 38 38 H 1.09004 * 109.97794 * 97.34344 * 18 17 15 39 39 H 1.07998 * 124.62473 * 359.97438 * 23 22 20 40 40 H 1.09010 * 110.51725 * 224.84908 * 24 23 22 41 41 H 1.08992 * 110.15484 * 102.57185 * 24 23 22 42 42 H 1.08997 * 110.99028 * 266.71463 * 25 24 23 43 43 H 1.09005 * 111.01197 * 142.92360 * 25 24 23 44 44 H 1.08994 * 110.36079 * 315.43789 * 26 22 20 45 45 H 1.09003 * 110.36277 * 77.75572 * 26 22 20 46 46 H 1.09009 * 110.36452 * 265.29266 * 27 19 18 47 47 H 1.08998 * 110.36819 * 142.96896 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0180 3.3202 -1.5234 7 6 1.6914 3.9349 -2.7044 8 1 1.1284 3.3993 -3.4544 9 6 2.0847 5.2473 -2.9366 10 7 2.7701 5.8989 -2.0241 11 14 1.6391 6.0852 -4.5455 12 1 0.1618 6.1222 -4.6918 13 1 2.1710 7.4717 -4.5454 14 1 2.2298 5.3280 -5.6781 15 6 1.9954 -0.7659 1.1376 16 1 1.5420 -0.4350 2.0720 17 6 1.7868 -2.2889 0.9270 18 6 2.9236 -2.9122 1.7648 19 7 3.9634 -1.8850 1.9233 20 6 5.1129 -2.0305 2.6117 21 8 5.8560 -1.0797 2.7623 22 6 5.4686 -3.3393 3.1811 23 6 6.6193 -3.6123 3.7811 24 6 6.6512 -5.0485 4.2500 25 6 5.1769 -5.5115 4.2136 26 6 4.5752 -4.5578 3.1563 27 6 3.5400 -0.6691 1.2051 28 1 -0.3634 0.5891 -0.8420 29 1 -0.3634 0.4345 0.9313 30 1 -0.3633 -1.0238 -0.0893 31 1 1.5610 1.9274 0.8308 32 1 3.0797 1.3445 0.1082 33 1 2.5226 3.8017 -0.8493 34 1 3.0444 6.8151 -2.1861 35 1 0.8129 -2.6006 1.3046 36 1 1.8954 -2.5511 -0.1254 37 1 3.3343 -3.7787 1.2466 38 1 2.5451 -3.2105 2.7426 39 1 7.4231 -2.9041 3.9179 40 1 7.0433 -5.1103 5.2652 41 1 7.2551 -5.6516 3.5720 42 1 4.6993 -5.3705 5.1832 43 1 5.1011 -6.5498 3.8906 44 1 3.5552 -4.2858 3.4276 45 1 4.5953 -5.0229 2.1706 46 1 3.9634 -0.6550 0.2007 47 1 3.8406 0.2215 1.7570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189632651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = -57.468657 kcal Electronic energy + Delta-G solvation = -27084.163963 eV Core-core repulsion = 23266.588914 eV Total energy + Delta-G solvation = -3817.575049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53917 -40.43878 -39.27048 -38.45809 -36.80496 -35.79460 -33.29615 -32.17748 -30.83709 -30.04423 -29.39320 -28.73280 -26.70524 -25.58850 -24.28248 -21.93238 -21.76231 -21.45950 -20.77334 -19.84434 -19.45785 -18.11123 -17.84320 -17.42180 -16.92550 -16.61104 -16.47838 -16.14848 -16.03345 -15.63894 -15.38103 -15.05871 -14.72035 -14.52669 -14.18126 -13.88589 -13.67204 -13.56523 -13.54059 -13.36172 -13.13893 -12.93930 -12.83464 -12.64851 -12.58413 -12.46844 -12.40080 -12.13940 -12.07308 -11.96106 -11.76547 -11.61228 -11.45357 -11.07375 -10.29235 -10.10441 -10.01398 -9.55380 -9.28117 -8.46767 -5.95882 0.34069 1.39164 1.40627 1.52060 1.82543 2.03779 2.16764 2.27824 2.73477 3.19210 3.25446 3.37879 3.56462 3.63470 3.68560 4.01381 4.05626 4.14417 4.17519 4.26544 4.29751 4.34627 4.36909 4.46474 4.53365 4.56230 4.69842 4.71873 4.76438 4.81315 4.88562 4.96477 4.99808 5.00455 5.12887 5.18114 5.21868 5.27551 5.39454 5.40275 5.44681 5.53758 5.82186 6.02773 6.17129 6.43455 6.59133 7.02144 7.11776 7.55006 8.10139 8.70567 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002374 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.211812 B =11790.587780 C =12656.721413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.521 5.521 3 C 0.053 3.947 4 C 0.444 3.556 5 O -0.609 6.609 6 N -0.576 5.576 7 C -0.332 4.332 8 H 0.082 0.918 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.269 1.269 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.073 3.927 16 H 0.069 0.931 17 C -0.115 4.115 18 C 0.098 3.902 19 N -0.611 5.611 20 C 0.569 3.431 21 O -0.596 6.596 22 C -0.210 4.210 23 C -0.074 4.074 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.093 4.093 27 C 0.108 3.892 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.394 0.606 34 H 0.277 0.723 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -24.686 15.615 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.246 5.246 3 C -0.079 4.079 4 C 0.231 3.769 5 O -0.495 6.495 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.100 0.900 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.194 1.194 13 H -0.196 1.196 14 H -0.197 1.197 15 C -0.036 4.036 16 H 0.086 0.914 17 C -0.153 4.153 18 C -0.023 4.023 19 N -0.343 5.343 20 C 0.362 3.638 21 O -0.479 6.479 22 C -0.213 4.213 23 C -0.094 4.094 24 C -0.140 4.140 25 C -0.156 4.156 26 C -0.129 4.129 27 C -0.015 4.015 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.140 0.860 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.111 -24.655 14.736 28.801 hybrid contribution 0.181 2.044 0.037 2.052 sum 2.291 -22.611 14.773 27.106 Atomic orbital electron populations 1.22435 0.85641 1.03330 1.00439 1.61606 1.09496 1.11588 1.41928 1.21779 1.01578 0.90116 0.94390 1.20627 0.83811 0.82200 0.90260 1.90456 1.45004 1.65239 1.48834 1.41961 1.50060 1.11616 1.17689 1.19642 1.34399 0.96383 0.95673 0.90014 1.26096 0.96265 0.96714 1.02498 1.69686 1.38118 1.12684 1.35909 0.84960 0.78716 0.77185 0.77307 1.19448 1.19645 1.19692 1.22832 0.92561 0.96031 0.92134 0.91352 1.22753 0.99523 0.91398 1.01592 1.22713 0.86965 0.91057 1.01597 1.48331 1.19486 1.15713 1.50807 1.18357 0.79458 0.88827 0.77204 1.90775 1.52207 1.43088 1.61855 1.21835 1.00250 0.93740 1.05426 1.24355 0.95403 0.98470 0.91192 1.21552 0.98902 0.90720 1.02828 1.22489 0.94009 0.99916 0.99229 1.21670 0.98953 0.91233 1.01083 1.22202 0.94735 0.88203 0.96384 0.92465 0.95043 0.89228 0.91615 0.88431 0.77248 0.91351 0.87111 0.89976 0.88841 0.88222 0.85993 0.88835 0.88375 0.90318 0.88455 0.89009 0.89189 0.91895 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.09 127.69 1.16 2.02 16 2 N -0.52 -16.42 4.40 -893.45 -3.93 -20.36 16 3 C 0.05 1.92 5.24 85.56 0.45 2.36 16 4 C 0.44 21.58 7.47 87.66 0.65 22.23 16 5 O -0.61 -33.50 13.92 -3.08 -0.04 -33.54 16 6 N -0.58 -30.50 5.29 -306.99 -1.62 -32.12 16 7 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 10 N -0.92 -51.35 13.05 21.66 0.28 -51.07 16 11 Si 0.99 43.77 29.55 68.60 2.03 45.79 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.07 1.74 2.73 46.31 0.13 1.86 16 16 H 0.07 1.49 8.13 -2.38 -0.02 1.47 16 17 C -0.11 -1.89 5.91 31.80 0.19 -1.70 16 18 C 0.10 1.42 5.24 86.74 0.45 1.87 16 19 N -0.61 -14.56 3.33 -815.97 -2.71 -17.28 16 20 C 0.57 15.80 7.81 86.57 0.68 16.48 16 21 O -0.60 -22.26 17.00 -4.06 -0.07 -22.33 16 22 C -0.21 -4.02 6.05 -18.57 -0.11 -4.13 16 23 C -0.07 -1.26 10.44 24.66 0.26 -1.01 16 24 C -0.10 -0.92 6.80 30.52 0.21 -0.71 16 25 C -0.12 -0.80 7.16 31.67 0.23 -0.58 16 26 C -0.09 -0.96 4.74 30.52 0.14 -0.82 16 27 C 0.11 2.99 4.93 86.86 0.43 3.42 16 28 H 0.06 2.20 5.81 -2.39 -0.01 2.19 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 2.12 7.63 -2.38 -0.02 2.10 16 31 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 32 H 0.10 3.41 6.27 -2.39 -0.01 3.39 16 33 H 0.39 20.15 7.90 -92.71 -0.73 19.42 16 34 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.05 6.61 -2.39 -0.02 1.04 16 38 H 0.10 0.97 6.18 -2.38 -0.01 0.95 16 39 H 0.12 2.37 8.04 -2.91 -0.02 2.35 16 40 H 0.09 0.61 8.14 -2.38 -0.02 0.60 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.10 0.31 8.14 -2.38 -0.02 0.30 16 44 H 0.09 0.75 5.43 -2.39 -0.01 0.73 16 45 H 0.09 0.77 7.33 -2.39 -0.02 0.76 16 46 H 0.06 1.98 7.98 -2.38 -0.02 1.97 16 47 H 0.06 1.93 7.69 -2.39 -0.02 1.92 16 Total: -1.00 -76.62 372.20 0.32 -76.29 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.25 Total: 32.06 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 6.14 Total: 22.54 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -7.99 Total: -120.82 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.11 Total: -55.87 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -76.62 0.32 -76.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189632651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.823 kcal (2) G-P(sol) polarization free energy of solvation -76.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds