Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46788 * 175.50628 * 3 2 1 5 5 C 1.53001 * 109.46900 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47327 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00030 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00324 * 180.02562 * 6 5 4 9 9 C 1.47023 * 125.64673 * 359.94830 * 8 6 5 10 10 C 1.54325 * 107.27302 * 178.98389 * 9 8 6 11 11 C 1.55159 * 102.94109 * 337.80519 * 10 9 8 12 12 H 1.08996 * 111.04107 * 277.42175 * 11 10 9 13 13 N 1.46902 * 111.00538 * 153.57682 * 11 10 9 14 14 C 1.46896 * 110.99945 * 191.76422 * 13 11 10 15 15 C 1.46893 * 110.99788 * 67.80393 * 13 11 10 16 16 C 1.50706 * 109.47176 * 189.99911 * 15 13 11 17 17 O 1.21295 * 119.99584 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 13 19 19 C 1.37095 * 119.99737 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99943 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 60.00104 * 23 21 19 25 25 H 1.48498 * 109.47295 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 300.00615 * 23 21 19 27 27 C 1.47423 * 125.65198 * 179.97438 * 8 6 5 28 28 H 4.44638 * 5.63370 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.46629 * 55.50801 * 3 2 1 30 30 H 1.09002 * 109.47236 * 295.50954 * 3 2 1 31 31 H 1.09001 * 109.47394 * 60.00642 * 4 3 2 32 32 H 1.08998 * 109.47366 * 299.99681 * 4 3 2 33 33 H 1.09003 * 109.47647 * 59.99818 * 5 4 3 34 34 H 1.09005 * 109.47137 * 299.99726 * 5 4 3 35 35 H 1.09000 * 109.88775 * 298.39610 * 9 8 6 36 36 H 1.08999 * 109.88178 * 59.56579 * 9 8 6 37 37 H 1.08999 * 110.71834 * 219.45096 * 10 9 8 38 38 H 1.08998 * 110.72190 * 96.16959 * 10 9 8 39 39 H 1.08997 * 109.47186 * 296.04216 * 14 13 11 40 40 H 1.08993 * 109.47654 * 56.04425 * 14 13 11 41 41 H 1.09000 * 109.47132 * 176.04519 * 14 13 11 42 42 H 1.09001 * 109.46739 * 70.00320 * 15 13 11 43 43 H 1.09000 * 109.47767 * 310.00579 * 15 13 11 44 44 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00288 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.36826 * 85.24619 * 27 8 6 47 47 H 1.09001 * 110.45679 * 322.97105 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4389 -0.1130 5 6 4.6853 1.4396 -0.1137 6 6 5.1870 2.8563 -0.2243 7 8 4.3985 3.7750 -0.2962 8 7 6.5120 3.1024 -0.2446 9 6 7.5732 2.0879 -0.1654 10 6 8.9237 2.8299 -0.2509 11 6 8.5430 4.1658 -0.9420 12 1 8.4939 4.0464 -2.0243 13 7 9.4816 5.2347 -0.5750 14 6 8.9742 6.5478 -0.9947 15 6 10.8145 4.9809 -1.1377 16 6 11.8029 5.9528 -0.5463 17 8 11.4331 6.7757 0.2645 18 7 13.0974 5.9077 -0.9183 19 6 13.9966 6.7915 -0.3799 20 1 13.6676 7.5237 0.3427 21 6 15.3314 6.7447 -0.7631 22 7 15.7318 5.8535 -1.6419 23 14 16.5564 7.9494 -0.0301 24 1 16.6000 7.7755 1.4441 25 1 17.9038 7.6932 -0.5993 26 1 16.1391 9.3376 -0.3525 27 6 7.1372 4.4333 -0.3492 28 1 -1.0502 -0.0004 0.0002 29 1 3.0096 -0.5812 -0.8470 30 1 3.0096 -0.4418 0.9275 31 1 2.7918 2.0207 0.7340 32 1 2.7918 1.8813 -1.0405 33 1 5.0486 0.8579 -0.9609 34 1 5.0493 0.9971 0.8137 35 1 7.5040 1.5521 0.7813 36 1 7.4808 1.3892 -0.9968 37 1 9.6336 2.2696 -0.8593 38 1 9.3273 3.0122 0.7451 39 1 8.9066 6.5806 -2.0821 40 1 7.9861 6.7102 -0.5642 41 1 9.6535 7.3271 -0.6493 42 1 10.7824 5.1085 -2.2197 43 1 11.1209 3.9619 -0.9010 44 1 13.3929 5.2499 -1.5670 45 1 16.6635 5.8210 -1.9097 46 1 7.2222 4.8911 0.6363 47 1 6.5600 5.0741 -1.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189910801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = -14.673996 kcal Electronic energy + Delta-G solvation = -26181.163385 eV Core-core repulsion = 22365.444052 eV Total energy + Delta-G solvation = -3815.719333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38620 -38.84413 -37.76424 -35.93090 -35.47459 -33.84702 -32.67533 -31.27090 -31.04753 -29.53374 -28.13461 -27.38475 -25.36125 -24.09179 -22.91751 -22.25783 -20.28389 -19.49000 -19.10850 -18.48153 -17.87050 -17.26350 -16.89585 -16.18217 -15.97825 -15.39541 -15.01275 -14.74558 -14.51841 -14.29039 -14.18996 -13.93242 -13.59850 -13.58461 -13.24308 -13.14612 -12.88592 -12.66729 -12.44081 -12.23343 -11.99358 -11.83739 -11.52131 -11.44308 -11.37507 -11.14771 -11.03211 -10.94780 -10.79692 -10.57581 -10.45057 -10.44372 -10.22677 -10.02791 -9.48330 -8.84725 -8.49650 -8.00864 -7.90573 -6.43158 -3.83980 2.43015 2.43708 2.50631 2.74530 3.19120 3.25058 3.29369 3.88367 3.91829 3.98232 4.13144 4.21860 4.47856 4.51847 4.59705 4.69093 4.85503 5.00672 5.03363 5.08995 5.12353 5.15194 5.19891 5.22198 5.26383 5.36319 5.58571 5.63040 5.68110 5.70064 5.72726 5.78480 5.84722 5.85607 5.90880 5.93840 6.04342 6.10750 6.26207 6.54159 7.16780 7.28402 7.31625 7.32670 7.53765 7.96021 8.04644 8.60271 9.16738 9.52692 10.04638 10.74445 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.045900 B = 0.001799 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.875158 B =15562.152939 C =15911.382480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.542 6.542 8 N -0.619 5.619 9 C 0.102 3.898 10 C -0.127 4.127 11 C 0.068 3.932 12 H 0.055 0.945 13 N -0.507 5.507 14 C 0.018 3.982 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.115 3.885 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.016 0.984 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.081 0.919 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 -14.816 -0.548 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.175 4.175 6 C 0.316 3.684 7 O -0.419 6.419 8 N -0.354 5.354 9 C -0.021 4.021 10 C -0.165 4.165 11 C -0.042 4.042 12 H 0.073 0.927 13 N -0.231 5.231 14 C -0.129 4.129 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.007 4.007 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.590 -13.805 0.394 24.793 hybrid contribution 0.758 0.034 -1.035 1.283 sum -19.831 -13.772 -0.640 24.153 Atomic orbital electron populations 1.24934 0.96034 1.00648 1.01243 1.23098 0.94584 1.00550 1.00360 1.18764 0.84902 0.97934 1.03399 1.21293 0.92902 0.95218 1.04403 1.21655 0.97247 0.94031 1.04617 1.20338 0.80339 0.91625 0.76098 1.90725 1.54276 1.46809 1.50061 1.48490 1.05125 1.08810 1.72973 1.22089 0.86903 0.91361 1.01742 1.22745 0.95573 0.94921 1.03251 1.22781 0.91840 0.92272 0.97278 0.92744 1.61634 1.00630 1.01500 1.59331 1.22599 1.01348 0.91962 0.97026 1.21874 0.89322 1.00328 0.96966 1.19698 0.83252 0.87668 0.86476 1.90489 1.78323 1.40519 1.36768 1.41847 1.06246 1.32380 1.39550 1.19651 0.88137 1.12424 1.22706 0.87952 1.25247 0.97924 0.97907 0.96763 1.69600 1.17823 1.34980 1.31944 0.85925 0.78858 0.80291 0.79191 1.19885 1.20993 1.19932 1.22212 0.91891 0.84506 1.02136 0.76690 0.89437 0.89405 0.90656 0.90709 0.88640 0.88582 0.90964 0.91250 0.89825 0.88862 0.96546 0.91974 0.88226 0.93417 0.89288 0.77520 0.91834 0.90030 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -1.56 13.34 -37.12 -0.50 -2.05 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.77 4.46 -26.73 -0.12 -0.89 16 5 C -0.14 -0.91 4.89 -27.88 -0.14 -1.05 16 6 C 0.53 5.90 7.85 -10.99 -0.09 5.81 16 7 O -0.54 -8.30 16.24 5.55 0.09 -8.21 16 8 N -0.62 -6.54 3.33 -170.53 -0.57 -7.11 16 9 C 0.10 0.79 6.49 -3.06 -0.02 0.77 16 10 C -0.13 -1.22 5.61 -24.89 -0.14 -1.36 16 11 C 0.07 0.82 2.71 -65.57 -0.18 0.64 16 12 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 13 N -0.51 -7.96 4.40 -233.76 -1.03 -8.99 16 14 C 0.02 0.29 8.98 60.06 0.54 0.83 16 15 C 0.05 0.78 5.36 -4.98 -0.03 0.76 16 16 C 0.44 10.11 7.51 -10.98 -0.08 10.03 16 17 O -0.58 -15.11 13.89 5.54 0.08 -15.03 16 18 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 23 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.12 1.42 5.05 -2.54 -0.01 1.40 16 28 H 0.22 0.95 7.80 -54.08 -0.42 0.53 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 41 H 0.10 1.93 5.88 -51.93 -0.31 1.63 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.32 7.01 -51.93 -0.36 0.95 16 44 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 47 H 0.08 1.00 7.84 -51.93 -0.41 0.59 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -33.63 391.74 -8.06 -41.69 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.58 Total: 7.55 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.60 Total: 5.76 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.93 Total: -53.41 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.63 -8.06 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189910801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.017 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds