Wall clock time and date at job start Fri Apr 10 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00422 * 2 1 4 4 C 1.50697 * 109.46869 * 269.99680 * 3 2 1 5 5 O 1.21289 * 120.00384 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00216 * 179.97438 * 4 3 2 7 7 C 1.47806 * 135.00642 * 0.02562 * 6 4 3 8 8 C 1.54656 * 85.79053 * 153.80102 * 7 6 4 9 9 H 1.09006 * 115.01486 * 139.90931 * 8 7 6 10 10 C 1.53011 * 110.84018 * 270.22792 * 8 7 6 11 11 C 1.52621 * 109.52295 * 143.77090 * 10 8 7 12 12 N 1.46615 * 108.26462 * 301.23821 * 11 10 8 13 13 C 1.36939 * 119.89158 * 237.29287 * 12 11 10 14 14 H 1.07998 * 119.99737 * 25.06972 * 13 12 11 15 15 C 1.38807 * 119.99981 * 205.34301 * 13 12 11 16 16 N 1.31619 * 120.00332 * 13.27186 * 15 13 12 17 17 Si 1.86801 * 119.99861 * 193.27296 * 15 13 12 18 18 H 1.48503 * 109.47307 * 60.00136 * 17 15 13 19 19 H 1.48507 * 109.47152 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 300.00101 * 17 15 13 21 21 C 1.45688 * 120.22012 * 57.01817 * 12 11 10 22 22 C 1.46817 * 135.01565 * 179.97438 * 6 4 3 23 23 H 1.08999 * 110.91054 * 94.55258 * 22 6 4 24 24 C 1.34783 * 120.00151 * 179.97438 * 2 1 3 25 25 O 1.21274 * 120.00427 * 180.02562 * 24 2 1 26 26 C 1.50698 * 119.99455 * 0.02562 * 24 2 1 27 27 C 1.53000 * 117.50129 * 248.62059 * 26 24 2 28 28 C 1.52998 * 60.00270 * 252.51421 * 27 26 24 29 29 H 1.09005 * 109.46713 * 89.99867 * 1 2 3 30 30 H 1.08996 * 109.47521 * 210.00343 * 1 2 3 31 31 H 1.09004 * 109.47168 * 330.00580 * 1 2 3 32 32 H 1.09002 * 109.47141 * 149.99897 * 3 2 1 33 33 H 1.08995 * 109.46937 * 29.99632 * 3 2 1 34 34 H 1.09001 * 113.82634 * 39.58956 * 7 6 4 35 35 H 1.09001 * 113.81975 * 268.01885 * 7 6 4 36 36 H 1.08999 * 109.47305 * 263.88604 * 10 8 7 37 37 H 1.09005 * 109.47243 * 23.89158 * 10 8 7 38 38 H 1.08993 * 109.65449 * 181.51313 * 11 10 8 39 39 H 1.09000 * 109.59548 * 60.92766 * 11 10 8 40 40 H 0.96995 * 120.00140 * 179.97438 * 16 15 13 41 41 H 1.08991 * 108.71154 * 82.01571 * 21 12 11 42 42 H 1.09004 * 108.71177 * 200.04401 * 21 12 11 43 43 H 1.09002 * 115.55372 * 34.32896 * 26 24 2 44 44 H 1.09003 * 117.49508 * 0.02562 * 27 26 24 45 45 H 1.09001 * 117.50345 * 145.01603 * 27 26 24 46 46 H 1.09002 * 117.49221 * 252.51372 * 28 27 26 47 47 H 1.08997 * 117.50107 * 107.48396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 8 2.0551 1.0209 -2.3427 6 7 3.1110 2.8514 -1.6672 7 6 3.7202 3.9069 -0.8309 8 6 4.6543 4.1639 -2.0363 9 1 4.8637 5.2138 -2.2416 10 6 5.9135 3.2995 -1.9433 11 6 6.3283 2.8503 -3.3417 12 7 5.2159 2.0993 -3.9319 13 6 5.4115 0.8131 -4.3591 14 1 6.1997 0.2145 -3.9268 15 6 4.6003 0.2805 -5.3516 16 7 3.8252 1.0714 -6.0630 17 14 4.6087 -1.5589 -5.6776 18 1 4.1931 -2.2814 -4.4485 19 1 3.6629 -1.8706 -6.7793 20 1 5.9771 -1.9868 -6.0645 21 6 3.9017 2.7150 -4.0600 22 6 3.5269 3.5710 -2.8774 23 1 2.7912 4.3265 -3.1530 24 6 2.1389 -1.1672 0.0005 25 8 3.3516 -1.1673 0.0010 26 6 1.3853 -2.4723 0.0005 27 6 1.4599 -3.3312 1.2645 28 6 2.2074 -3.7627 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5138 32 1 3.1500 1.1383 0.5139 33 1 1.6085 2.0284 0.5138 34 1 4.2349 3.5271 0.0517 35 1 3.0482 4.7362 -0.6100 36 1 6.7193 3.8786 -1.4924 37 1 5.7079 2.4230 -1.3286 38 1 7.2095 2.2123 -3.2755 39 1 6.5500 3.7235 -3.9553 40 1 3.2587 0.6992 -6.7568 41 1 3.8914 3.3337 -4.9572 42 1 3.1563 1.9277 -4.1725 43 1 0.4471 -2.4735 -0.5544 44 1 2.0538 -2.9521 2.0962 45 1 0.5707 -3.8975 1.5415 46 1 1.8098 -4.6129 -0.5531 47 1 3.2932 -3.6676 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221591813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:23 Heat of formation + Delta-G solvation = 8.544561 kcal Electronic energy + Delta-G solvation = -29165.625912 eV Core-core repulsion = 25350.913411 eV Total energy + Delta-G solvation = -3814.712501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88798 -41.14807 -39.16632 -37.20933 -37.03498 -36.43830 -34.04767 -31.99845 -31.48332 -29.39399 -28.46433 -27.56903 -25.72954 -25.07058 -23.99985 -23.37773 -22.68265 -21.28612 -20.03732 -19.53899 -18.69855 -18.55060 -17.62714 -17.49705 -17.33202 -16.79244 -16.15549 -16.09039 -15.81399 -15.49304 -15.14911 -15.10891 -14.73143 -14.50475 -14.34333 -13.98842 -13.87500 -13.60144 -13.52389 -13.30058 -13.19420 -12.86717 -12.80139 -12.73351 -12.50086 -12.38017 -12.28585 -12.02940 -11.77642 -11.63249 -11.51942 -11.48595 -11.28003 -10.99906 -10.79828 -10.50801 -9.68697 -9.48911 -8.71094 -7.90644 -5.33929 1.25822 1.29554 1.33911 1.39265 1.78354 1.80126 2.17663 2.42189 2.83356 3.24873 3.46214 3.47776 3.52395 3.69584 3.74250 3.91801 3.94966 4.07338 4.20160 4.20265 4.27151 4.31361 4.43677 4.53966 4.59739 4.63292 4.66231 4.68517 4.74666 4.80404 4.83939 4.88014 4.92678 4.95891 5.02795 5.09780 5.15571 5.30150 5.33316 5.43663 5.50450 5.69576 5.80247 6.23708 6.35248 6.94227 7.06525 7.14813 7.35850 7.92250 8.29523 9.13272 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.005917 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.215823 B = 4730.747794 C = 6386.370335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.599 5.599 3 C 0.112 3.888 4 C 0.501 3.499 5 O -0.582 6.582 6 N -0.640 5.640 7 C 0.112 3.888 8 C -0.101 4.101 9 H 0.129 0.871 10 C -0.107 4.107 11 C 0.138 3.862 12 N -0.602 5.602 13 C -0.256 4.256 14 H 0.051 0.949 15 C -0.043 4.043 16 N -0.930 5.930 17 Si 0.952 3.048 18 H -0.302 1.302 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.181 3.819 22 C 0.108 3.892 23 H 0.092 0.908 24 C 0.533 3.467 25 O -0.589 6.589 26 C -0.209 4.209 27 C -0.110 4.110 28 C -0.170 4.170 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.031 0.969 40 H 0.245 0.755 41 H -0.005 1.005 42 H 0.050 0.950 43 H 0.142 0.858 44 H 0.096 0.904 45 H 0.144 0.856 46 H 0.122 0.878 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 4.448 20.775 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.330 5.330 3 C -0.014 4.014 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.376 5.376 7 C -0.008 4.008 8 C -0.119 4.119 9 H 0.147 0.853 10 C -0.146 4.146 11 C 0.013 3.987 12 N -0.326 5.326 13 C -0.387 4.387 14 H 0.069 0.931 15 C -0.238 4.238 16 N -0.576 5.576 17 Si 0.781 3.219 18 H -0.229 1.229 19 H -0.211 1.211 20 H -0.190 1.190 21 C 0.055 3.945 22 C 0.004 3.996 23 H 0.110 0.890 24 C 0.323 3.677 25 O -0.469 6.469 26 C -0.229 4.229 27 C -0.148 4.148 28 C -0.207 4.207 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.171 0.829 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.069 0.931 43 H 0.160 0.840 44 H 0.115 0.885 45 H 0.162 0.838 46 H 0.140 0.860 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.214 3.875 20.206 22.154 hybrid contribution 0.010 -1.185 -1.371 1.812 sum -8.205 2.690 18.836 20.720 Atomic orbital electron populations 1.22088 0.76339 1.05926 1.02018 1.47478 1.08779 1.04306 1.72387 1.21333 1.00477 0.87432 0.92200 1.21517 0.76749 0.79960 0.92732 1.90739 1.52783 1.54433 1.48148 1.50085 1.55420 1.20745 1.11364 1.23831 0.93390 0.88709 0.94885 1.22864 0.93385 1.00694 0.94997 0.85341 1.21660 0.97454 0.98398 0.97076 1.20893 0.89856 0.94470 0.93469 1.43692 1.05513 1.11897 1.71495 1.19270 1.15950 0.89953 1.13487 0.93141 1.25558 1.00503 1.01158 0.96570 1.70151 1.30115 1.34142 1.23223 0.85571 0.77953 0.82006 0.76358 1.22942 1.21093 1.19019 1.19688 0.87749 0.95197 0.91909 1.22664 0.96012 0.92397 0.88574 0.89014 1.20442 0.87005 0.86176 0.74100 1.90678 1.16441 1.88031 1.51782 1.22265 1.03104 0.89083 1.08488 1.23058 1.03401 0.98826 0.89468 1.23014 0.98774 0.95977 1.02950 0.94292 0.87835 0.87778 0.88252 0.82931 0.88499 0.85635 0.88030 0.94719 0.93584 0.95091 0.94605 0.98763 0.93122 0.84042 0.88548 0.83823 0.85953 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 10.05 127.77 1.28 2.81 16 2 N -0.60 -17.95 2.36 -851.13 -2.01 -19.96 16 3 C 0.11 3.28 5.71 85.63 0.49 3.77 16 4 C 0.50 20.58 8.06 87.66 0.71 21.28 16 5 O -0.58 -31.71 15.55 -3.06 -0.05 -31.76 16 6 N -0.64 -22.74 3.34 -822.92 -2.75 -25.50 16 7 C 0.11 2.40 7.97 86.34 0.69 3.09 16 8 C -0.10 -2.76 4.39 -10.32 -0.05 -2.80 16 9 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 10 C -0.11 -3.48 5.64 30.47 0.17 -3.31 16 11 C 0.14 6.01 6.44 86.23 0.56 6.57 16 12 N -0.60 -33.75 3.03 -708.81 -2.15 -35.90 16 13 C -0.26 -16.34 9.54 84.03 0.80 -15.54 16 14 H 0.05 3.24 7.84 -2.91 -0.02 3.21 16 15 C -0.04 -2.76 4.98 84.86 0.42 -2.34 16 16 N -0.93 -62.15 10.90 21.65 0.24 -61.92 16 17 Si 0.95 53.37 29.57 68.60 2.03 55.39 16 18 H -0.30 -17.70 7.11 99.48 0.71 -16.99 16 19 H -0.29 -15.54 7.11 99.48 0.71 -14.84 16 20 H -0.26 -13.83 7.11 99.48 0.71 -13.12 16 21 C 0.18 9.82 4.61 85.79 0.40 10.22 16 22 C 0.11 4.18 4.22 43.72 0.18 4.36 16 23 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 24 C 0.53 19.19 7.46 87.66 0.65 19.85 16 25 O -0.59 -27.37 15.84 -3.01 -0.05 -27.42 16 26 C -0.21 -5.55 4.80 -11.54 -0.06 -5.60 16 27 C -0.11 -2.01 10.23 30.59 0.31 -1.70 16 28 C -0.17 -4.41 10.04 30.60 0.31 -4.10 16 29 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 1.42 6.64 -2.39 -0.02 1.40 16 31 H 0.10 1.31 7.89 -2.38 -0.02 1.29 16 32 H 0.10 3.06 7.42 -2.39 -0.02 3.05 16 33 H 0.15 2.68 7.89 -2.39 -0.02 2.66 16 34 H 0.10 1.73 7.97 -2.39 -0.02 1.71 16 35 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.03 1.32 7.69 -2.38 -0.02 1.30 16 38 H 0.05 2.03 7.88 -2.39 -0.02 2.02 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.24 15.98 8.31 -92.71 -0.77 15.21 16 41 H -0.01 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.05 3.31 4.85 -2.38 -0.01 3.30 16 43 H 0.14 3.18 7.26 -2.39 -0.02 3.16 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.07 2.45 7.67 -2.39 -0.02 2.44 16 Total: -1.00 -100.44 376.63 3.09 -97.35 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.96 Total: 13.16 kcal Atomic # 6 Polarization: 29.67 SS G_CDS: 6.87 Total: 36.55 kcal Atomic # 7 Polarization: -136.60 SS G_CDS: -6.67 Total: -143.27 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -0.10 Total: -59.18 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 2.03 Total: 55.39 kcal Total: -100.44 3.09 -97.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221591813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.896 kcal (2) G-P(sol) polarization free energy of solvation -100.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds