Wall clock time and date at job start Fri Apr 10 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00083 * 2 1 4 4 O 1.21282 * 120.00348 * 354.42985 * 3 2 1 5 5 C 1.50700 * 119.99986 * 174.42767 * 3 2 1 6 6 C 1.50700 * 115.54931 * 293.75238 * 5 3 2 7 7 O 1.21275 * 120.00157 * 100.17141 * 6 5 3 8 8 N 1.34782 * 120.00001 * 280.16937 * 6 5 3 9 9 C 1.47152 * 121.21668 * 356.99965 * 8 6 5 10 10 C 1.52825 * 107.98512 * 122.43601 * 9 8 6 11 11 C 1.53102 * 110.58085 * 57.34012 * 10 9 8 12 12 H 1.09003 * 112.48397 * 70.55635 * 11 10 9 13 13 C 1.56021 * 106.39512 * 195.43730 * 11 10 9 14 14 C 1.54498 * 102.61648 * 78.37956 * 13 11 10 15 15 N 1.47438 * 107.14731 * 22.84513 * 14 13 11 16 16 C 1.36936 * 126.06390 * 181.62745 * 15 14 13 17 17 H 1.07995 * 120.00062 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99578 * 359.97438 * 16 15 14 19 19 N 1.31623 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99948 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47303 * 59.99715 * 20 18 16 22 22 H 1.48497 * 109.47341 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47135 * 299.99886 * 20 18 16 24 24 C 1.46472 * 107.87789 * 1.62239 * 15 14 13 25 25 H 1.09001 * 107.85801 * 89.63282 * 24 15 14 26 26 C 1.46759 * 121.21466 * 176.70755 * 8 6 5 27 27 C 1.53001 * 117.51842 * 79.45255 * 5 3 2 28 28 C 1.52998 * 117.49880 * 148.08336 * 5 3 2 29 29 H 1.08999 * 109.46743 * 299.99398 * 1 2 3 30 30 H 1.08993 * 109.47133 * 59.99389 * 1 2 3 31 31 H 1.08997 * 109.46943 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99994 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.75836 * 242.06134 * 9 8 6 34 34 H 1.09003 * 109.75764 * 2.76030 * 9 8 6 35 35 H 1.09004 * 109.26110 * 177.62638 * 10 9 8 36 36 H 1.08998 * 109.25777 * 297.09916 * 10 9 8 37 37 H 1.09007 * 110.77767 * 196.66364 * 13 11 10 38 38 H 1.09001 * 110.77836 * 320.09342 * 13 11 10 39 39 H 1.09000 * 109.90149 * 263.46826 * 14 13 11 40 40 H 1.08992 * 109.90557 * 142.22436 * 14 13 11 41 41 H 0.96994 * 119.99634 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.22960 * 353.12387 * 26 8 6 43 43 H 1.08998 * 109.22268 * 112.48710 * 26 8 6 44 44 H 1.09002 * 117.49427 * 214.97190 * 27 5 3 45 45 H 1.08991 * 117.49873 * 359.97438 * 27 5 3 46 46 H 1.08996 * 117.50111 * 359.97438 * 28 5 3 47 47 H 1.09007 * 117.49847 * 145.00118 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5369 2.2151 -0.1019 5 6 3.6406 1.1702 0.1267 6 6 4.1824 0.6850 1.4466 7 8 4.6065 -0.4466 1.5488 8 7 4.1958 1.5086 2.5134 9 6 3.7489 2.9063 2.4034 10 6 2.6142 3.1190 3.4048 11 6 3.0779 2.7793 4.8238 12 1 3.7866 3.5085 5.2165 13 6 1.7861 2.6390 5.6875 14 6 1.2761 1.2315 5.3056 15 7 2.4333 0.4733 4.7960 16 6 2.4097 -0.8105 4.3201 17 1 3.3203 -1.2733 3.9696 18 6 1.2153 -1.5172 4.2892 19 7 0.1056 -0.9532 4.7168 20 14 1.1830 -3.2687 3.6406 21 1 2.0812 -4.1179 4.4635 22 1 -0.2026 -3.7979 3.7128 23 1 1.6447 -3.2826 2.2292 24 6 3.6129 1.3367 4.8889 25 1 4.0649 1.1809 5.8685 26 6 4.6507 1.0424 3.8285 27 6 4.4566 0.8588 -1.1294 28 6 4.4072 2.2874 -0.5839 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.5761 3.5770 2.6358 34 1 3.3904 3.1001 1.3924 35 1 2.2951 4.1607 3.3706 36 1 1.7745 2.4771 3.1384 37 1 2.0241 2.6891 6.7501 38 1 1.0556 3.4016 5.4174 39 1 0.5139 1.3107 4.5305 40 1 0.8650 0.7348 6.1844 41 1 -0.7289 -1.4473 4.6955 42 1 4.8269 -0.0324 3.7872 43 1 5.5810 1.5483 4.0865 44 1 5.3855 0.3029 -1.0012 45 1 3.9075 0.6512 -2.0477 46 1 3.8255 3.0199 -1.1434 47 1 5.3036 2.6714 -0.0968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223674678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:32 Heat of formation + Delta-G solvation = -6.086217 kcal Electronic energy + Delta-G solvation = -30480.981672 eV Core-core repulsion = 26665.634733 eV Total energy + Delta-G solvation = -3815.346939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66466 -39.21939 -38.01918 -35.92007 -34.97498 -34.26447 -32.81414 -31.13895 -29.23865 -28.35678 -27.35093 -25.09496 -24.50210 -23.16507 -22.78211 -22.23624 -20.98461 -19.95793 -19.30164 -18.47089 -17.46808 -16.54296 -16.13147 -15.71634 -15.58663 -14.94565 -14.78634 -14.61808 -14.21647 -14.17176 -13.91015 -13.70090 -13.16946 -12.87970 -12.71011 -12.57300 -12.47253 -12.00975 -11.95965 -11.71095 -11.56183 -11.38734 -11.27647 -11.05096 -10.85191 -10.78939 -10.70416 -10.51555 -10.14803 -9.92642 -9.82985 -9.71054 -9.61780 -9.48220 -9.22498 -8.83500 -8.53074 -8.13187 -6.75473 -5.63861 -2.95528 2.55506 3.01506 3.22024 3.40478 3.42387 3.46814 3.50263 3.79954 4.54677 4.58953 4.68714 4.77255 4.99909 5.14294 5.22811 5.40439 5.45332 5.51429 5.53074 5.60650 5.63594 5.71940 5.73780 5.77491 5.79827 5.90357 5.98082 6.01966 6.08768 6.15559 6.21167 6.30698 6.32906 6.46154 6.56627 6.63070 6.65485 6.76488 7.01005 7.09606 7.64405 7.66168 7.69044 7.84607 7.90253 8.30639 8.39195 8.57353 9.28948 9.90048 10.55981 11.48126 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.007804 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.089314 B = 3586.985811 C = 4656.180390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.716 5.716 3 C 0.566 3.434 4 O -0.536 6.536 5 C -0.187 4.187 6 C 0.565 3.435 7 O -0.529 6.529 8 N -0.583 5.583 9 C 0.105 3.895 10 C -0.119 4.119 11 C -0.102 4.102 12 H 0.075 0.925 13 C -0.143 4.143 14 C 0.180 3.820 15 N -0.588 5.588 16 C -0.212 4.212 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.923 5.923 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.153 3.847 25 H 0.028 0.972 26 C 0.114 3.886 27 C -0.133 4.133 28 C -0.137 4.137 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.406 0.594 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.249 0.751 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 8.319 -8.428 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.365 5.365 3 C 0.350 3.650 4 O -0.413 6.413 5 C -0.194 4.194 6 C 0.351 3.649 7 O -0.406 6.406 8 N -0.314 5.314 9 C -0.018 4.018 10 C -0.157 4.157 11 C -0.121 4.121 12 H 0.093 0.907 13 C -0.182 4.182 14 C 0.056 3.944 15 N -0.314 5.314 16 C -0.340 4.340 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.571 5.571 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.212 1.212 24 C 0.044 3.956 25 H 0.045 0.955 26 C -0.010 4.010 27 C -0.171 4.171 28 C -0.174 4.174 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.240 0.760 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.130 0.870 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.293 8.251 -8.437 13.374 hybrid contribution -0.114 -1.402 -0.099 1.410 sum 6.179 6.850 -8.536 12.568 Atomic orbital electron populations 1.21532 0.79018 1.02432 1.02153 1.45599 1.07978 1.08699 1.74244 1.18852 0.86550 0.83872 0.75721 1.90671 1.69294 1.31461 1.49841 1.21443 0.93196 1.09570 0.95146 1.18735 0.78317 0.84690 0.83186 1.90684 1.47511 1.18517 1.83858 1.47721 1.63538 1.11402 1.08764 1.21807 0.97019 0.81752 1.01247 1.21778 0.98783 1.01004 0.94170 1.22386 0.97418 0.96929 0.95402 0.90671 1.23152 0.96518 1.00225 0.98273 1.21190 0.89448 0.85869 0.97918 1.44278 1.02376 1.10869 1.73832 1.18950 0.94313 0.87015 1.33713 0.90369 1.24670 0.95619 0.98024 1.01884 1.69956 0.98349 1.35996 1.52801 0.86339 0.76201 0.85126 0.79030 1.21345 1.21911 1.21216 1.20729 0.89729 0.90007 0.95112 0.95498 1.21446 0.95781 1.02007 0.81720 1.23061 1.01225 0.98557 0.94268 1.23095 1.01028 0.91935 1.01389 0.91493 0.92536 0.90784 0.75966 0.91916 0.89237 0.92089 0.90248 0.92771 0.92316 0.93798 0.94162 0.94063 0.88714 0.92582 0.87169 0.87691 0.86999 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.71 59.85 0.64 2.10 16 2 N -0.72 -12.26 5.71 -67.08 -0.38 -12.64 16 3 C 0.57 9.97 6.88 -10.99 -0.08 9.90 16 4 O -0.54 -10.41 16.16 5.56 0.09 -10.32 16 5 C -0.19 -2.92 1.14 -156.81 -0.18 -3.09 16 6 C 0.57 10.58 6.87 -10.98 -0.08 10.51 16 7 O -0.53 -11.52 16.46 5.56 0.09 -11.43 16 8 N -0.58 -10.40 2.97 -174.10 -0.52 -10.92 16 9 C 0.10 1.61 6.11 -3.78 -0.02 1.59 16 10 C -0.12 -2.02 5.04 -26.77 -0.13 -2.16 16 11 C -0.10 -1.73 3.68 -88.43 -0.33 -2.05 16 12 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.14 -2.66 6.33 -24.33 -0.15 -2.81 16 14 C 0.18 4.32 4.61 -2.74 -0.01 4.31 16 15 N -0.59 -14.45 3.20 -164.42 -0.53 -14.97 16 16 C -0.21 -5.79 9.70 -15.06 -0.15 -5.94 16 17 H 0.08 2.20 6.51 -52.49 -0.34 1.86 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.76 10.38 55.49 0.58 -26.19 16 20 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.15 3.05 2.97 -68.30 -0.20 2.85 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 C 0.11 2.11 5.67 -4.77 -0.03 2.09 16 27 C -0.13 -1.60 9.86 -26.73 -0.26 -1.86 16 28 C -0.14 -1.61 8.09 -26.73 -0.22 -1.83 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.41 6.78 8.83 -40.82 -0.36 6.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.38 4.59 -51.93 -0.24 1.14 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.71 6.85 -51.93 -0.36 1.35 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 39 H 0.04 1.19 7.04 -51.93 -0.37 0.82 16 40 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 42 H 0.09 2.04 5.55 -51.93 -0.29 1.75 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.11 1.25 8.01 -51.93 -0.42 0.84 16 47 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -32.77 367.83 -8.82 -41.59 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.38 Total: 8.48 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -1.29 Total: 13.32 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.85 Total: -64.72 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.18 Total: -21.75 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.77 -8.82 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223674678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.504 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds