Wall clock time and date at job start Fri Apr 10 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00083 * 2 1 4 4 O 1.21282 * 120.00348 * 354.42985 * 3 2 1 5 5 C 1.50700 * 119.99986 * 174.42767 * 3 2 1 6 6 C 1.50700 * 115.54931 * 293.75238 * 5 3 2 7 7 O 1.21275 * 120.00157 * 100.17141 * 6 5 3 8 8 N 1.34782 * 120.00001 * 280.16937 * 6 5 3 9 9 C 1.47152 * 121.21668 * 356.99965 * 8 6 5 10 10 C 1.52825 * 107.98512 * 122.43601 * 9 8 6 11 11 C 1.53102 * 110.58085 * 57.34012 * 10 9 8 12 12 H 1.09003 * 112.48397 * 70.55635 * 11 10 9 13 13 C 1.56021 * 106.39512 * 195.43730 * 11 10 9 14 14 C 1.54498 * 102.61648 * 78.37956 * 13 11 10 15 15 N 1.47438 * 107.14731 * 22.84513 * 14 13 11 16 16 C 1.36936 * 126.06390 * 181.62745 * 15 14 13 17 17 H 1.07995 * 120.00062 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99578 * 359.97438 * 16 15 14 19 19 N 1.31623 * 120.00059 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99948 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47303 * 59.99715 * 20 18 16 22 22 H 1.48497 * 109.47341 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47135 * 299.99886 * 20 18 16 24 24 C 1.46472 * 107.87789 * 1.62239 * 15 14 13 25 25 H 1.09001 * 107.85801 * 89.63282 * 24 15 14 26 26 C 1.46759 * 121.21466 * 176.70755 * 8 6 5 27 27 C 1.53001 * 117.51842 * 79.45255 * 5 3 2 28 28 C 1.52998 * 117.49880 * 148.08336 * 5 3 2 29 29 H 1.08999 * 109.46743 * 299.99398 * 1 2 3 30 30 H 1.08993 * 109.47133 * 59.99389 * 1 2 3 31 31 H 1.08997 * 109.46943 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99994 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.75836 * 242.06134 * 9 8 6 34 34 H 1.09003 * 109.75764 * 2.76030 * 9 8 6 35 35 H 1.09004 * 109.26110 * 177.62638 * 10 9 8 36 36 H 1.08998 * 109.25777 * 297.09916 * 10 9 8 37 37 H 1.09007 * 110.77767 * 196.66364 * 13 11 10 38 38 H 1.09001 * 110.77836 * 320.09342 * 13 11 10 39 39 H 1.09000 * 109.90149 * 263.46826 * 14 13 11 40 40 H 1.08992 * 109.90557 * 142.22436 * 14 13 11 41 41 H 0.96994 * 119.99634 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.22960 * 353.12387 * 26 8 6 43 43 H 1.08998 * 109.22268 * 112.48710 * 26 8 6 44 44 H 1.09002 * 117.49427 * 214.97190 * 27 5 3 45 45 H 1.08991 * 117.49873 * 359.97438 * 27 5 3 46 46 H 1.08996 * 117.50111 * 359.97438 * 28 5 3 47 47 H 1.09007 * 117.49847 * 145.00118 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5369 2.2151 -0.1019 5 6 3.6406 1.1702 0.1267 6 6 4.1824 0.6850 1.4466 7 8 4.6065 -0.4466 1.5488 8 7 4.1958 1.5086 2.5134 9 6 3.7489 2.9063 2.4034 10 6 2.6142 3.1190 3.4048 11 6 3.0779 2.7793 4.8238 12 1 3.7866 3.5085 5.2165 13 6 1.7861 2.6390 5.6875 14 6 1.2761 1.2315 5.3056 15 7 2.4333 0.4733 4.7960 16 6 2.4097 -0.8105 4.3201 17 1 3.3203 -1.2733 3.9696 18 6 1.2153 -1.5172 4.2892 19 7 0.1056 -0.9532 4.7168 20 14 1.1830 -3.2687 3.6406 21 1 2.0812 -4.1179 4.4635 22 1 -0.2026 -3.7979 3.7128 23 1 1.6447 -3.2826 2.2292 24 6 3.6129 1.3367 4.8889 25 1 4.0649 1.1809 5.8685 26 6 4.6507 1.0424 3.8285 27 6 4.4566 0.8588 -1.1294 28 6 4.4072 2.2874 -0.5839 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.5761 3.5770 2.6358 34 1 3.3904 3.1001 1.3924 35 1 2.2951 4.1607 3.3706 36 1 1.7745 2.4771 3.1384 37 1 2.0241 2.6891 6.7501 38 1 1.0556 3.4016 5.4174 39 1 0.5139 1.3107 4.5305 40 1 0.8650 0.7348 6.1844 41 1 -0.7289 -1.4473 4.6955 42 1 4.8269 -0.0324 3.7872 43 1 5.5810 1.5483 4.0865 44 1 5.3855 0.3029 -1.0012 45 1 3.9075 0.6512 -2.0477 46 1 3.8255 3.0199 -1.1434 47 1 5.3036 2.6714 -0.0968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223674678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:31 Heat of formation + Delta-G solvation = -29.233789 kcal Electronic energy + Delta-G solvation = -30481.985426 eV Core-core repulsion = 26665.634733 eV Total energy + Delta-G solvation = -3816.350693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99492 -40.67943 -39.52147 -37.09908 -36.54964 -35.65574 -34.65261 -32.83962 -30.85296 -30.07424 -28.64576 -26.59759 -26.34237 -24.56559 -24.05605 -23.34504 -22.39529 -21.74436 -20.72169 -19.93723 -18.84100 -18.42839 -17.44143 -17.08561 -17.00390 -16.76833 -16.17298 -16.08642 -15.89796 -15.57090 -15.47756 -15.13688 -14.65295 -14.32011 -14.14335 -14.01658 -13.85635 -13.71902 -13.28675 -13.18491 -13.09502 -12.97690 -12.67138 -12.60666 -12.56446 -12.36573 -12.18156 -12.08610 -11.66110 -11.62202 -11.44285 -11.32938 -11.20517 -10.99854 -10.65660 -10.63200 -10.22289 -9.53972 -8.79337 -7.80318 -5.11265 1.17407 1.36851 1.38457 1.45854 1.67810 1.99472 2.15370 2.48471 2.67403 3.35328 3.38596 3.53622 3.58880 3.78339 3.80147 3.87738 3.95508 4.09624 4.26913 4.27941 4.43340 4.47418 4.48301 4.57894 4.58841 4.64222 4.65856 4.72498 4.78343 4.83503 4.86860 4.89879 4.99296 5.10420 5.11851 5.14098 5.27767 5.29868 5.52790 5.61479 5.66680 5.70716 5.80398 6.23738 6.33408 6.47802 7.03576 7.15581 7.17950 7.84463 8.49317 9.29984 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.007804 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.089314 B = 3586.985811 C = 4656.180390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.722 5.722 3 C 0.562 3.438 4 O -0.559 6.559 5 C -0.215 4.215 6 C 0.558 3.442 7 O -0.571 6.571 8 N -0.585 5.585 9 C 0.105 3.895 10 C -0.115 4.115 11 C -0.083 4.083 12 H 0.126 0.874 13 C -0.131 4.131 14 C 0.191 3.809 15 N -0.604 5.604 16 C -0.204 4.204 17 H 0.067 0.933 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.951 3.049 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.141 3.859 25 H 0.031 0.969 26 C 0.117 3.883 27 C -0.118 4.118 28 C -0.111 4.111 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.407 0.593 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.001 0.999 40 H -0.001 1.001 41 H 0.241 0.759 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 10.810 -9.363 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.371 5.371 3 C 0.348 3.652 4 O -0.438 6.438 5 C -0.221 4.221 6 C 0.345 3.655 7 O -0.451 6.451 8 N -0.316 5.316 9 C -0.016 4.016 10 C -0.154 4.154 11 C -0.103 4.103 12 H 0.143 0.857 13 C -0.169 4.169 14 C 0.065 3.935 15 N -0.329 5.329 16 C -0.333 4.333 17 H 0.085 0.915 18 C -0.252 4.252 19 N -0.597 5.597 20 Si 0.781 3.219 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.034 3.966 25 H 0.049 0.951 26 C -0.007 4.007 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.241 0.759 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.711 10.776 -9.372 16.728 hybrid contribution -0.841 -2.176 0.230 2.344 sum 7.870 8.600 -9.142 14.814 Atomic orbital electron populations 1.21538 0.78737 1.03350 1.01305 1.45761 1.08438 1.08913 1.73985 1.19238 0.87571 0.83438 0.74986 1.90641 1.70090 1.32046 1.50984 1.21305 0.91880 1.13988 0.94973 1.19244 0.77679 0.84174 0.84356 1.90652 1.49436 1.20229 1.84774 1.47888 1.63033 1.12480 1.08205 1.22015 0.97858 0.80858 1.00905 1.21724 0.97611 1.01482 0.94534 1.22438 0.96927 0.95707 0.95196 0.85659 1.23022 0.97776 0.96474 0.99651 1.20891 0.88865 0.88988 0.94710 1.44458 1.04328 1.10729 1.73395 1.19007 0.93598 0.88453 1.32291 0.91537 1.25289 0.95623 1.01134 1.03182 1.70162 0.98382 1.36777 1.54409 0.85544 0.75899 0.81717 0.78696 1.21327 1.21947 1.20615 1.21049 0.88592 0.91256 0.95735 0.95111 1.21349 0.96941 1.00444 0.81928 1.23222 1.00492 0.98899 0.92911 1.23276 1.00517 0.91535 0.99446 0.95016 0.90547 0.89079 0.75930 0.87351 0.89194 0.89056 0.95805 0.91057 0.90703 0.98114 0.98285 0.94978 0.92436 0.88317 0.86722 0.86070 0.86047 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.71 127.77 1.37 4.45 16 2 N -0.72 -25.23 5.71 -484.53 -2.77 -28.00 16 3 C 0.56 19.71 6.88 87.66 0.60 20.31 16 4 O -0.56 -21.57 16.16 -3.04 -0.05 -21.62 16 5 C -0.22 -6.40 1.14 -53.67 -0.06 -6.46 16 6 C 0.56 20.50 6.87 87.66 0.60 21.11 16 7 O -0.57 -25.16 16.46 -3.02 -0.05 -25.21 16 8 N -0.59 -19.82 2.97 -823.11 -2.44 -22.27 16 9 C 0.11 2.86 6.11 86.20 0.53 3.38 16 10 C -0.12 -3.61 5.04 30.57 0.15 -3.45 16 11 C -0.08 -2.55 3.68 -9.38 -0.03 -2.58 16 12 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 13 C -0.13 -4.65 6.33 32.15 0.20 -4.45 16 14 C 0.19 9.50 4.61 86.71 0.40 9.90 16 15 N -0.60 -30.45 3.20 -674.10 -2.15 -32.60 16 16 C -0.20 -11.61 9.70 84.03 0.81 -10.79 16 17 H 0.07 3.90 6.51 -2.91 -0.02 3.88 16 18 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 19 N -0.95 -58.05 10.38 21.65 0.22 -57.82 16 20 Si 0.95 48.11 29.55 68.60 2.03 50.14 16 21 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 23 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 24 C 0.14 5.42 2.97 44.77 0.13 5.55 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 C 0.12 4.15 5.67 85.76 0.49 4.63 16 27 C -0.12 -2.53 9.86 30.60 0.30 -2.22 16 28 C -0.11 -2.23 8.09 30.59 0.25 -1.98 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.41 13.90 8.83 -92.71 -0.82 13.08 16 33 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.09 2.48 4.59 -2.39 -0.01 2.47 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.02 1.01 6.85 -2.39 -0.02 0.99 16 37 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.07 2.43 7.97 -2.39 -0.02 2.41 16 39 H 0.00 0.04 7.04 -2.39 -0.02 0.02 16 40 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 41 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.06 2.50 5.55 -2.39 -0.01 2.48 16 43 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.12 2.27 8.01 -2.39 -0.02 2.25 16 47 H 0.13 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -77.86 367.83 1.16 -76.69 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.17 Total: 26.31 kcal Atomic # 6 Polarization: 28.16 SS G_CDS: 6.21 Total: 34.38 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -7.14 Total: -140.69 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.10 Total: -46.83 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -77.86 1.16 -76.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223674678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.457 kcal (2) G-P(sol) polarization free energy of solvation -77.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds