Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99793 * 0.02562 * 4 2 1 6 6 C 1.50695 * 119.99987 * 180.02562 * 4 2 1 7 7 N 1.46904 * 109.46907 * 180.02562 * 6 4 2 8 8 C 1.47653 * 111.00335 * 266.32327 * 7 6 4 9 9 C 1.52652 * 87.64638 * 222.00152 * 8 7 6 10 10 C 1.52122 * 129.73030 * 246.27802 * 9 8 7 11 11 C 1.52114 * 129.72980 * 164.46980 * 9 8 7 12 12 H 1.09005 * 117.52362 * 226.39174 * 11 9 8 13 13 C 1.50701 * 117.52407 * 11.55405 * 11 9 8 14 14 O 1.21279 * 119.99823 * 0.02562 * 13 11 9 15 15 N 1.34778 * 120.00158 * 180.02562 * 13 11 9 16 16 C 1.47073 * 136.05648 * 359.62296 * 15 13 11 17 17 C 1.53238 * 88.08350 * 207.20673 * 16 15 13 18 18 C 1.50693 * 114.32542 * 220.47203 * 17 16 15 19 19 H 1.07999 * 120.00544 * 93.76365 * 18 17 16 20 20 C 1.37880 * 119.99754 * 273.75902 * 18 17 16 21 21 N 1.31519 * 119.99851 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00130 * 359.97438 * 20 18 17 23 23 H 1.48510 * 109.46799 * 90.00325 * 22 20 18 24 24 H 1.48497 * 109.47301 * 209.99606 * 22 20 18 25 25 H 1.48495 * 109.47152 * 330.00258 * 22 20 18 26 26 C 1.47067 * 136.05896 * 180.02562 * 15 13 11 27 27 C 1.47657 * 110.99901 * 169.99815 * 7 6 4 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 32 32 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 33 33 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 34 34 H 1.08997 * 109.47396 * 299.99929 * 6 4 2 35 35 H 1.09000 * 109.47392 * 60.00790 * 6 4 2 36 36 H 1.09004 * 113.51995 * 336.69015 * 8 7 6 37 37 H 1.09004 * 113.52668 * 107.30700 * 8 7 6 38 38 H 1.08998 * 117.51908 * 348.44549 * 10 9 8 39 39 H 1.08996 * 117.52221 * 133.55100 * 10 9 8 40 40 H 1.09005 * 113.46444 * 321.94290 * 16 15 13 41 41 H 1.09000 * 113.46568 * 92.38161 * 16 15 13 42 42 H 1.09001 * 114.01483 * 87.71756 * 17 16 15 43 43 H 0.96993 * 120.00228 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.46117 * 267.61906 * 26 15 13 45 45 H 1.08995 * 113.46624 * 37.99874 * 26 15 13 46 46 H 1.09001 * 113.52658 * 252.68771 * 27 7 6 47 47 H 1.09000 * 113.52507 * 23.31376 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 7 4.1356 -2.5522 0.0010 8 6 4.3948 -3.0220 1.3766 9 6 5.6724 -3.6687 0.8477 10 6 6.0437 -5.1398 0.7372 11 6 6.8812 -4.1957 1.6059 12 1 7.8682 -3.9152 1.2378 13 6 6.7592 -4.3337 3.1016 14 8 5.7245 -4.0294 3.6562 15 7 7.8000 -4.7952 3.8229 16 6 9.1660 -5.2579 3.5346 17 6 9.0839 -6.1235 4.7964 18 6 10.3493 -6.1501 5.6143 19 1 10.4768 -5.4592 6.4346 20 6 11.3444 -7.0565 5.3154 21 7 12.4485 -7.0800 6.0296 22 14 11.1236 -8.2520 3.8972 23 1 11.6479 -7.6415 2.6490 24 1 11.8670 -9.5048 4.1855 25 1 9.6807 -8.5600 3.7294 26 6 8.0673 -5.0643 5.2438 27 6 5.5920 -2.5984 -0.2379 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 1.4892 2.0972 -0.0005 32 1 2.8242 1.3265 0.8901 33 1 2.8242 1.3264 -0.8899 34 1 4.0096 -0.6535 -0.8888 35 1 4.0089 -0.6532 0.8912 36 1 4.5774 -2.2139 2.0850 37 1 3.6595 -3.7418 1.7363 38 1 5.4048 -5.8602 1.2478 39 1 6.4791 -5.4801 -0.2023 40 1 9.2425 -5.8390 2.6155 41 1 9.9143 -4.4679 3.5980 42 1 8.6552 -7.1117 4.6294 43 1 13.1487 -7.7174 5.8191 44 1 8.5198 -4.2222 5.7674 45 1 7.2113 -5.4802 5.7752 46 1 5.8588 -2.9639 -1.2295 47 1 6.1055 -1.6735 0.0244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277337434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = 54.042670 kcal Electronic energy + Delta-G solvation = -26748.404962 eV Core-core repulsion = 22935.665407 eV Total energy + Delta-G solvation = -3812.739555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00386 -39.86525 -39.20493 -37.31699 -35.78993 -34.94962 -32.66811 -30.50691 -29.64886 -28.14033 -26.37228 -26.17373 -25.80514 -25.11846 -23.27631 -23.06454 -20.17431 -19.59805 -18.82341 -18.07119 -17.38268 -17.25603 -16.77841 -16.57513 -16.34476 -15.64575 -15.40624 -15.05477 -14.85575 -14.34160 -14.13178 -13.76288 -13.52526 -13.39394 -13.19362 -13.12929 -12.95926 -12.81104 -12.75202 -12.47814 -12.34442 -11.99048 -11.80686 -11.76760 -11.62556 -10.96353 -10.74337 -10.65557 -10.39982 -10.38716 -10.02111 -9.97223 -9.79149 -9.41005 -9.17673 -9.04343 -8.94116 -8.69929 -8.06308 -6.23025 -4.26216 2.40799 2.56815 2.79762 3.18701 3.26210 3.30004 3.31059 3.60913 4.00529 4.11723 4.28488 4.32845 4.46931 4.59816 4.65418 4.75335 4.86691 4.90657 4.95291 4.98431 5.07801 5.10839 5.16132 5.22308 5.24990 5.38081 5.46102 5.56055 5.65676 5.72147 5.76914 5.89664 5.93937 5.96887 6.07197 6.09740 6.12324 6.22066 6.30517 6.38336 6.53608 6.71568 7.01481 7.15424 7.52478 7.95893 8.29347 8.37341 8.62390 8.80035 9.37439 10.88854 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.002229 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.735900 B =12559.001046 C =12857.117435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.631 5.631 3 C 0.079 3.921 4 C 0.516 3.484 5 O -0.513 6.513 6 C 0.001 3.999 7 N -0.451 5.451 8 C 0.061 3.939 9 C -0.137 4.137 10 C -0.108 4.108 11 C -0.162 4.162 12 H 0.123 0.877 13 C 0.562 3.438 14 O -0.556 6.556 15 N -0.641 5.641 16 C 0.086 3.914 17 C -0.013 4.013 18 C -0.511 4.511 19 H 0.080 0.920 20 C 0.077 3.923 21 N -0.892 5.892 22 Si 0.874 3.126 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.262 1.262 26 C 0.115 3.885 27 C 0.041 3.959 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.267 0.733 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 15.578 -15.613 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.367 5.367 3 C -0.064 4.064 4 C 0.303 3.697 5 O -0.386 6.386 6 C -0.131 4.131 7 N -0.173 5.173 8 C -0.067 4.067 9 C -0.138 4.138 10 C -0.145 4.145 11 C -0.184 4.184 12 H 0.141 0.859 13 C 0.351 3.649 14 O -0.436 6.436 15 N -0.374 5.374 16 C -0.037 4.037 17 C -0.032 4.032 18 C -0.549 4.549 19 H 0.098 0.902 20 C -0.127 4.127 21 N -0.529 5.529 22 Si 0.701 3.299 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.007 4.007 27 C -0.087 4.087 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.177 14.828 -15.857 27.683 hybrid contribution 0.768 0.209 -0.244 0.832 sum -16.409 15.036 -16.101 27.470 Atomic orbital electron populations 1.21642 0.79117 1.03028 1.01835 1.47803 1.07134 1.06403 1.75392 1.21802 0.97409 0.85368 1.01829 1.20500 0.89871 0.83152 0.76188 1.90717 1.69805 1.30778 1.47340 1.22631 0.93246 0.93721 1.03467 1.68899 1.13378 1.16077 1.18983 1.23263 0.94619 0.99235 0.89601 1.21841 0.95982 0.96769 0.99219 1.22694 1.00402 0.91112 1.00300 1.22096 0.97263 1.07294 0.91735 0.85893 1.19047 0.82445 0.76371 0.87018 1.90643 1.28932 1.51460 1.72572 1.49843 1.13730 1.62630 1.11181 1.23802 0.80963 0.97885 1.01079 1.20862 0.95819 0.93944 0.92620 1.20758 0.98265 1.19740 1.16089 0.90205 1.25011 0.94946 0.96656 0.96057 1.69890 1.06954 1.36653 1.39393 0.86873 0.78985 0.81129 0.82910 1.19938 1.21188 1.18653 1.23110 0.97476 0.98399 0.81722 1.23396 0.89254 0.97051 0.99040 0.92833 0.90520 0.91334 0.90313 0.92005 0.92035 0.88023 0.90666 0.90570 0.88993 0.87776 0.87381 0.92627 0.89672 0.91564 0.92338 0.90236 0.92037 0.88976 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.41 59.85 0.62 1.24 16 2 N -0.63 -5.29 3.27 -189.51 -0.62 -5.91 16 3 C 0.08 0.35 9.74 59.85 0.58 0.93 16 4 C 0.52 6.05 7.74 -10.99 -0.09 5.96 16 5 O -0.51 -8.32 16.01 5.56 0.09 -8.23 16 6 C 0.00 0.01 4.11 -4.98 -0.02 -0.01 16 7 N -0.45 -5.55 5.81 -245.42 -1.43 -6.98 16 8 C 0.06 0.85 6.22 -6.78 -0.04 0.81 16 9 C -0.14 -1.76 3.13 -155.77 -0.49 -2.25 16 10 C -0.11 -1.37 10.24 -27.07 -0.28 -1.65 16 11 C -0.16 -2.30 6.02 -92.12 -0.55 -2.86 16 12 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 13 C 0.56 10.30 7.86 -10.98 -0.09 10.21 16 14 O -0.56 -11.63 16.07 5.56 0.09 -11.54 16 15 N -0.64 -12.20 3.69 -185.38 -0.68 -12.88 16 16 C 0.09 1.62 7.52 -8.63 -0.06 1.56 16 17 C -0.01 -0.28 2.98 -91.40 -0.27 -0.55 16 18 C -0.51 -13.07 9.38 -34.44 -0.32 -13.39 16 19 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 20 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 22 Si 0.87 19.77 27.42 -169.99 -4.66 15.11 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.26 -5.70 6.21 56.52 0.35 -5.35 16 26 C 0.11 2.28 8.19 -8.51 -0.07 2.21 16 27 C 0.04 0.42 7.71 -6.77 -0.05 0.36 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.68 7.42 -51.93 -0.39 0.30 16 30 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 31 H 0.08 0.21 7.79 -51.93 -0.40 -0.20 16 32 H 0.06 0.25 7.85 -51.92 -0.41 -0.16 16 33 H 0.06 0.20 7.85 -51.93 -0.41 -0.21 16 34 H 0.10 0.71 7.80 -51.93 -0.41 0.30 16 35 H 0.08 0.63 7.03 -51.93 -0.37 0.26 16 36 H 0.08 1.08 7.39 -51.93 -0.38 0.69 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 42 H 0.07 1.47 6.50 -51.93 -0.34 1.13 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -33.56 386.55 -9.59 -43.15 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.75 Total: 1.63 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.23 Total: 4.53 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.96 Total: -50.46 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.66 Total: 15.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.56 -9.59 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277337434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.191 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds