Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99793 * 0.02562 * 4 2 1 6 6 C 1.50695 * 119.99987 * 180.02562 * 4 2 1 7 7 N 1.46904 * 109.46907 * 180.02562 * 6 4 2 8 8 C 1.47653 * 111.00335 * 266.32327 * 7 6 4 9 9 C 1.52652 * 87.64638 * 222.00152 * 8 7 6 10 10 C 1.52122 * 129.73030 * 246.27802 * 9 8 7 11 11 C 1.52114 * 129.72980 * 164.46980 * 9 8 7 12 12 H 1.09005 * 117.52362 * 226.39174 * 11 9 8 13 13 C 1.50701 * 117.52407 * 11.55405 * 11 9 8 14 14 O 1.21279 * 119.99823 * 0.02562 * 13 11 9 15 15 N 1.34778 * 120.00158 * 180.02562 * 13 11 9 16 16 C 1.47073 * 136.05648 * 359.62296 * 15 13 11 17 17 C 1.53238 * 88.08350 * 207.20673 * 16 15 13 18 18 C 1.50693 * 114.32542 * 220.47203 * 17 16 15 19 19 H 1.07999 * 120.00544 * 93.76365 * 18 17 16 20 20 C 1.37880 * 119.99754 * 273.75902 * 18 17 16 21 21 N 1.31519 * 119.99851 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00130 * 359.97438 * 20 18 17 23 23 H 1.48510 * 109.46799 * 90.00325 * 22 20 18 24 24 H 1.48497 * 109.47301 * 209.99606 * 22 20 18 25 25 H 1.48495 * 109.47152 * 330.00258 * 22 20 18 26 26 C 1.47067 * 136.05896 * 180.02562 * 15 13 11 27 27 C 1.47657 * 110.99901 * 169.99815 * 7 6 4 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 32 32 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 33 33 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 34 34 H 1.08997 * 109.47396 * 299.99929 * 6 4 2 35 35 H 1.09000 * 109.47392 * 60.00790 * 6 4 2 36 36 H 1.09004 * 113.51995 * 336.69015 * 8 7 6 37 37 H 1.09004 * 113.52668 * 107.30700 * 8 7 6 38 38 H 1.08998 * 117.51908 * 348.44549 * 10 9 8 39 39 H 1.08996 * 117.52221 * 133.55100 * 10 9 8 40 40 H 1.09005 * 113.46444 * 321.94290 * 16 15 13 41 41 H 1.09000 * 113.46568 * 92.38161 * 16 15 13 42 42 H 1.09001 * 114.01483 * 87.71756 * 17 16 15 43 43 H 0.96993 * 120.00228 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.46117 * 267.61906 * 26 15 13 45 45 H 1.08995 * 113.46624 * 37.99874 * 26 15 13 46 46 H 1.09001 * 113.52658 * 252.68771 * 27 7 6 47 47 H 1.09000 * 113.52507 * 23.31376 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 7 4.1356 -2.5522 0.0010 8 6 4.3948 -3.0220 1.3766 9 6 5.6724 -3.6687 0.8477 10 6 6.0437 -5.1398 0.7372 11 6 6.8812 -4.1957 1.6059 12 1 7.8682 -3.9152 1.2378 13 6 6.7592 -4.3337 3.1016 14 8 5.7245 -4.0294 3.6562 15 7 7.8000 -4.7952 3.8229 16 6 9.1660 -5.2579 3.5346 17 6 9.0839 -6.1235 4.7964 18 6 10.3493 -6.1501 5.6143 19 1 10.4768 -5.4592 6.4346 20 6 11.3444 -7.0565 5.3154 21 7 12.4485 -7.0800 6.0296 22 14 11.1236 -8.2520 3.8972 23 1 11.6479 -7.6415 2.6490 24 1 11.8670 -9.5048 4.1855 25 1 9.6807 -8.5600 3.7294 26 6 8.0673 -5.0643 5.2438 27 6 5.5920 -2.5984 -0.2379 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 1.4892 2.0972 -0.0005 32 1 2.8242 1.3265 0.8901 33 1 2.8242 1.3264 -0.8899 34 1 4.0096 -0.6535 -0.8888 35 1 4.0089 -0.6532 0.8912 36 1 4.5774 -2.2139 2.0850 37 1 3.6595 -3.7418 1.7363 38 1 5.4048 -5.8602 1.2478 39 1 6.4791 -5.4801 -0.2023 40 1 9.2425 -5.8390 2.6155 41 1 9.9143 -4.4679 3.5980 42 1 8.6552 -7.1117 4.6294 43 1 13.1487 -7.7174 5.8191 44 1 8.5198 -4.2222 5.7674 45 1 7.2113 -5.4802 5.7752 46 1 5.8588 -2.9639 -1.2295 47 1 6.1055 -1.6735 0.0244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277337434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = 29.135684 kcal Electronic energy + Delta-G solvation = -26749.485010 eV Core-core repulsion = 22935.665407 eV Total energy + Delta-G solvation = -3813.819602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99513 -41.06598 -40.32196 -38.77180 -36.54691 -36.02771 -34.65463 -31.61974 -30.98771 -28.68963 -27.64537 -27.09921 -26.85820 -26.74460 -24.46294 -24.01840 -21.75867 -20.35790 -20.03748 -19.32282 -19.13501 -18.22535 -18.02371 -17.44178 -17.17018 -16.79979 -16.62843 -16.35816 -15.91165 -15.64659 -15.27851 -15.12661 -14.82213 -14.49615 -14.36813 -13.96835 -13.81461 -13.71858 -13.53822 -13.47154 -13.45330 -13.39611 -13.06535 -12.84005 -12.70303 -12.49606 -12.46120 -11.80346 -11.66726 -11.53071 -11.37364 -11.34737 -11.24018 -10.90036 -10.75082 -10.60624 -9.84480 -9.70286 -9.62356 -8.26218 -6.34335 1.42390 1.44447 1.46812 1.55181 1.58424 1.86576 1.98023 2.39871 2.61006 3.03769 3.07976 3.16589 3.47461 3.56142 3.72971 3.80279 4.00495 4.06013 4.16272 4.19796 4.30165 4.31942 4.38243 4.42357 4.45113 4.47048 4.53052 4.61736 4.64985 4.72657 4.74749 4.78569 4.80605 4.84920 4.87459 4.90308 4.92451 4.94122 5.06584 5.17482 5.39475 5.49530 5.61625 5.89110 6.29339 6.33239 6.71683 6.86678 7.14933 7.17272 7.33215 8.89109 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.002229 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.735900 B =12559.001046 C =12857.117435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.627 5.627 3 C 0.071 3.929 4 C 0.504 3.496 5 O -0.574 6.574 6 C 0.004 3.996 7 N -0.471 5.471 8 C 0.058 3.942 9 C -0.139 4.139 10 C -0.102 4.102 11 C -0.166 4.166 12 H 0.150 0.850 13 C 0.556 3.444 14 O -0.589 6.589 15 N -0.642 5.642 16 C 0.101 3.899 17 C -0.020 4.020 18 C -0.511 4.511 19 H 0.041 0.959 20 C 0.021 3.979 21 N -0.944 5.944 22 Si 0.938 3.062 23 H -0.253 1.253 24 H -0.292 1.292 25 H -0.246 1.246 26 C 0.114 3.886 27 C 0.057 3.943 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.268 0.732 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.114 0.886 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.716 17.075 -19.165 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.362 5.362 3 C -0.071 4.071 4 C 0.292 3.708 5 O -0.453 6.453 6 C -0.127 4.127 7 N -0.194 5.194 8 C -0.071 4.071 9 C -0.141 4.141 10 C -0.139 4.139 11 C -0.187 4.187 12 H 0.167 0.833 13 C 0.348 3.652 14 O -0.471 6.471 15 N -0.375 5.375 16 C -0.022 4.022 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.059 0.941 20 C -0.178 4.178 21 N -0.582 5.582 22 Si 0.762 3.238 23 H -0.177 1.177 24 H -0.219 1.219 25 H -0.170 1.170 26 C -0.009 4.009 27 C -0.071 4.071 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.160 0.840 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.132 0.868 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.093 16.397 -19.427 30.634 hybrid contribution 0.621 -0.131 1.000 1.184 sum -16.472 16.266 -18.427 29.588 Atomic orbital electron populations 1.21743 0.78809 1.03548 1.01929 1.47977 1.07734 1.06992 1.73493 1.22109 0.98070 0.83892 1.03008 1.21036 0.90968 0.83225 0.75525 1.90687 1.71009 1.33029 1.50541 1.22713 0.91700 0.92682 1.05631 1.68822 1.15188 1.18156 1.17206 1.23116 0.94532 0.98677 0.90732 1.22017 0.94487 0.97739 0.99812 1.22827 0.99462 0.90738 1.00906 1.22074 0.99078 1.09060 0.88507 0.83277 1.19854 0.81390 0.75166 0.88824 1.90635 1.30071 1.52687 1.73718 1.49841 1.14118 1.63073 1.10445 1.23547 0.80885 0.97382 1.00348 1.20756 0.94295 0.94757 0.94149 1.20898 0.99916 1.18649 1.15446 0.94076 1.25862 0.94401 0.98623 0.98920 1.70039 1.08250 1.38121 1.41840 0.85847 0.79686 0.78289 0.80016 1.17699 1.21873 1.16988 1.22993 0.97043 0.97947 0.82922 1.23454 0.87781 0.96870 0.98959 0.92993 0.92875 0.87882 0.88146 0.91392 0.90197 0.84642 0.89233 0.91269 0.92879 0.89643 0.84029 0.90037 0.89322 0.91555 0.92317 0.90422 0.92217 0.86839 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.41 127.77 1.33 2.45 16 2 N -0.63 -9.57 3.27 -871.89 -2.85 -12.43 16 3 C 0.07 0.40 9.74 127.77 1.24 1.64 16 4 C 0.50 11.53 7.74 87.65 0.68 12.21 16 5 O -0.57 -19.37 16.01 -3.02 -0.05 -19.42 16 6 C 0.00 0.07 4.11 85.55 0.35 0.42 16 7 N -0.47 -10.79 5.81 -930.36 -5.41 -16.20 16 8 C 0.06 1.62 6.22 83.98 0.52 2.14 16 9 C -0.14 -3.27 3.13 -52.99 -0.17 -3.44 16 10 C -0.10 -2.33 10.24 30.37 0.31 -2.01 16 11 C -0.17 -4.23 6.02 -11.76 -0.07 -4.30 16 12 H 0.15 3.04 8.14 -2.38 -0.02 3.02 16 13 C 0.56 19.71 7.86 87.66 0.69 20.40 16 14 O -0.59 -24.81 16.07 -3.03 -0.05 -24.85 16 15 N -0.64 -23.53 3.69 -858.81 -3.17 -26.70 16 16 C 0.10 3.58 7.52 83.09 0.63 4.20 16 17 C -0.02 -0.85 2.98 -11.30 -0.03 -0.89 16 18 C -0.51 -26.57 9.38 25.60 0.24 -26.33 16 19 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 20 C 0.02 1.10 5.47 84.65 0.46 1.56 16 21 N -0.94 -55.09 13.96 21.45 0.30 -54.79 16 22 Si 0.94 39.73 27.42 68.60 1.88 41.61 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.25 -9.71 6.21 99.48 0.62 -9.10 16 26 C 0.11 4.52 8.19 83.18 0.68 5.20 16 27 C 0.06 0.94 7.71 83.98 0.65 1.59 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.98 7.42 -2.39 -0.02 0.97 16 30 H 0.10 0.65 7.92 -2.38 -0.02 0.63 16 31 H 0.10 0.15 7.79 -2.39 -0.02 0.13 16 32 H 0.07 0.34 7.85 -2.38 -0.02 0.32 16 33 H 0.08 0.20 7.85 -2.39 -0.02 0.18 16 34 H 0.14 1.32 7.80 -2.39 -0.02 1.30 16 35 H 0.09 1.26 7.03 -2.39 -0.02 1.25 16 36 H 0.07 1.97 7.39 -2.39 -0.02 1.95 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.09 3.11 8.10 -2.39 -0.02 3.09 16 42 H 0.07 2.84 6.50 -2.39 -0.02 2.82 16 43 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.10 1.18 7.91 -2.39 -0.02 1.16 16 Total: -1.00 -77.69 386.55 -0.97 -78.67 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.86 Total: 19.28 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.51 Total: 14.83 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -11.13 Total: -110.11 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.10 Total: -44.27 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.88 Total: 41.61 kcal Total: -77.69 -0.97 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277337434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.801 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds