Wall clock time and date at job start Fri Apr 10 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46987 * 2 1 4 4 C 1.50698 * 109.47377 * 240.00737 * 2 1 3 5 5 H 1.08005 * 119.99820 * 245.52613 * 4 2 1 6 6 C 1.37875 * 120.00224 * 65.51905 * 4 2 1 7 7 N 1.31509 * 119.99997 * 9.00375 * 6 4 2 8 8 Si 1.86804 * 120.00156 * 188.99473 * 6 4 2 9 9 H 1.48504 * 109.47058 * 84.99614 * 8 6 4 10 10 H 1.48499 * 109.47027 * 205.00099 * 8 6 4 11 11 H 1.48499 * 109.47044 * 325.00060 * 8 6 4 12 12 N 1.46903 * 109.47644 * 120.00319 * 2 1 3 13 13 C 1.46897 * 111.00075 * 176.04793 * 12 2 1 14 14 C 1.38574 * 110.99376 * 300.00282 * 12 2 1 15 15 N 1.31214 * 126.48093 * 359.68597 * 14 12 2 16 16 N 1.28525 * 109.86407 * 179.82111 * 15 14 12 17 17 C 1.30296 * 110.05280 * 0.45320 * 16 15 14 18 18 C 1.50704 * 126.34747 * 179.76077 * 17 16 15 19 19 C 1.53004 * 117.49547 * 8.70690 * 18 17 16 20 20 C 1.52997 * 117.49812 * 300.04606 * 18 17 16 21 21 N 1.36453 * 126.46809 * 179.97438 * 14 12 2 22 22 C 1.46502 * 127.14092 * 0.02562 * 21 14 12 23 23 C 1.50694 * 109.47476 * 89.97055 * 22 21 14 24 24 O 1.21284 * 119.99800 * 0.02562 * 23 22 21 25 25 N 1.34776 * 120.00281 * 179.97438 * 23 22 21 26 26 C 1.46503 * 119.99958 * 179.97438 * 25 23 22 27 27 C 1.46495 * 120.00043 * 0.02562 * 25 23 22 28 28 H 1.08994 * 109.47278 * 306.44657 * 1 2 3 29 29 H 1.09001 * 109.47037 * 66.45339 * 1 2 3 30 30 H 1.09007 * 109.46622 * 186.44784 * 1 2 3 31 31 H 0.97001 * 120.00238 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47474 * 60.00123 * 13 12 2 33 33 H 1.09003 * 109.46841 * 179.97438 * 13 12 2 34 34 H 1.08997 * 109.47114 * 299.99833 * 13 12 2 35 35 H 1.08993 * 115.54999 * 154.37300 * 18 17 16 36 36 H 1.09000 * 117.50140 * 359.97438 * 19 18 17 37 37 H 1.08996 * 117.49636 * 145.02484 * 19 18 17 38 38 H 1.09003 * 117.49997 * 214.97900 * 20 18 17 39 39 H 1.09005 * 117.50238 * 359.97438 * 20 18 17 40 40 H 1.08998 * 109.47173 * 209.97649 * 22 21 14 41 41 H 1.09004 * 109.46871 * 329.97473 * 22 21 14 42 42 H 1.09006 * 109.46670 * 90.01144 * 26 25 23 43 43 H 1.08997 * 109.47088 * 210.00389 * 26 25 23 44 44 H 1.08998 * 109.47202 * 330.01047 * 26 25 23 45 45 H 1.09003 * 109.47554 * 59.99167 * 27 25 23 46 46 H 1.08997 * 109.47550 * 179.97438 * 27 25 23 47 47 H 1.09003 * 109.46828 * 299.99216 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.5777 -1.6375 -1.1340 6 6 1.7957 -0.1765 -2.4795 7 7 1.2913 1.0327 -2.5931 8 14 2.1918 -1.1707 -4.0106 9 1 1.0484 -2.0623 -4.3314 10 1 2.4362 -0.2496 -5.1495 11 1 3.4059 -1.9908 -3.7679 12 7 2.0198 -0.6926 1.1994 13 6 3.4852 -0.7945 1.1869 14 6 1.5754 -0.0642 2.3518 15 7 0.8233 1.0092 2.4146 16 7 0.6001 1.3148 3.6429 17 6 1.1996 0.4671 4.4302 18 6 1.1864 0.4844 5.9371 19 6 0.2376 1.4688 6.6239 20 6 1.7466 1.7258 6.6342 21 7 1.8418 -0.4418 3.6357 22 6 2.6492 -1.5836 4.0724 23 6 4.0861 -1.1549 4.2221 24 8 4.4044 -0.0083 3.9875 25 7 5.0173 -2.0453 4.6176 26 6 6.4144 -1.6286 4.7625 27 6 4.6328 -3.4300 4.9015 28 1 -0.3633 0.6105 0.8266 29 1 -0.3633 0.4106 -0.9421 30 1 -0.3633 -1.0213 0.1154 31 1 1.1251 1.4084 -3.4718 32 1 3.9188 0.2052 1.1591 33 1 3.8211 -1.3109 2.0862 34 1 3.8030 -1.3530 0.3065 35 1 1.3473 -0.4795 6.4197 36 1 -0.3767 2.1041 5.9859 37 1 -0.2253 1.1526 7.5587 38 1 2.2758 1.5785 7.5757 39 1 2.1252 2.5298 6.0030 40 1 2.2767 -1.9467 5.0302 41 1 2.5830 -2.3800 3.3312 42 1 6.5842 -1.2744 5.7794 43 1 7.0692 -2.4757 4.5588 44 1 6.6290 -0.8255 4.0575 45 1 4.2029 -3.8788 4.0060 46 1 5.5131 -3.9968 5.2048 47 1 3.8962 -3.4451 5.7049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411674931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:16 Heat of formation + Delta-G solvation = 109.839440 kcal Electronic energy + Delta-G solvation = -28915.025570 eV Core-core repulsion = 25136.998296 eV Total energy + Delta-G solvation = -3778.027274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53040 -40.01128 -37.47544 -36.61499 -35.86844 -34.59534 -32.71956 -29.57439 -29.30400 -29.18968 -27.79400 -25.93656 -25.36461 -24.31551 -23.60042 -22.38359 -21.72160 -20.62987 -19.35317 -19.22161 -17.64721 -17.14159 -16.34307 -16.31339 -16.10961 -15.39074 -15.32539 -15.14415 -14.44794 -14.35047 -14.03611 -13.75068 -13.44628 -13.16062 -13.11863 -13.02337 -12.62517 -12.30939 -12.29527 -12.08211 -11.85427 -11.53130 -11.20576 -10.97544 -10.94151 -10.83345 -10.63334 -10.57454 -10.44124 -10.30552 -10.19568 -10.08809 -9.70986 -9.51248 -9.15111 -9.03566 -8.63427 -8.35895 -7.27792 -6.03504 -4.07695 2.05908 2.29853 2.48801 2.86409 3.30893 3.37238 3.38348 3.39635 3.96168 4.14001 4.34784 4.41415 4.46885 4.62000 4.65487 4.78909 4.83491 4.90382 4.92605 5.00582 5.05484 5.25229 5.26860 5.29684 5.55272 5.60163 5.62015 5.65008 5.86529 6.03353 6.06882 6.15263 6.19669 6.26341 6.39371 6.54916 6.86627 6.96621 7.02107 7.18660 7.35734 7.50661 7.67837 7.77587 7.85740 7.97505 8.18934 8.49385 8.94132 9.44827 9.55522 11.05238 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.004585 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.783264 B = 6105.169209 C = 7782.805779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.229 3.771 3 H 0.028 0.972 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.455 5.455 13 C 0.044 3.956 14 C 0.397 3.603 15 N -0.313 5.313 16 N -0.281 5.281 17 C 0.188 3.812 18 C -0.076 4.076 19 C -0.150 4.150 20 C -0.159 4.159 21 N -0.476 5.476 22 C 0.097 3.903 23 C 0.498 3.502 24 O -0.509 6.509 25 N -0.622 5.622 26 C 0.086 3.914 27 C 0.073 3.927 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -9.877 20.576 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.125 3.875 3 H 0.046 0.954 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.179 5.179 13 C -0.103 4.103 14 C 0.042 3.958 15 N -0.157 5.157 16 N -0.119 5.119 17 C -0.079 4.079 18 C -0.097 4.097 19 C -0.188 4.188 20 C -0.197 4.197 21 N -0.174 5.174 22 C -0.031 4.031 23 C 0.284 3.716 24 O -0.383 6.383 25 N -0.359 5.359 26 C -0.056 4.056 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.959 -8.392 19.748 22.269 hybrid contribution 1.398 -1.344 -0.524 2.009 sum 7.357 -9.737 19.224 22.770 Atomic orbital electron populations 1.21890 0.96867 0.98798 1.01920 1.19379 0.93105 0.92993 0.81991 0.95386 1.20994 1.36870 1.08227 0.89750 0.91885 1.24895 0.95227 0.94639 0.98899 1.69997 1.43822 1.13955 1.23989 0.86551 0.78667 0.79913 0.82461 1.20461 1.21287 1.20018 1.59133 1.10634 1.48399 0.99751 1.22376 0.85203 1.01255 1.01459 1.23201 0.97854 0.90960 0.83775 1.74840 1.20611 1.09821 1.10395 1.73875 1.19983 1.21331 0.96739 1.23276 0.99479 0.91249 0.93908 1.19870 1.08742 0.96049 0.84992 1.23009 0.93049 1.01268 1.01484 1.23033 0.96729 0.98462 1.01470 1.45523 1.40914 1.24578 1.06346 1.21591 0.88490 0.89012 1.04005 1.20757 0.87709 0.85950 0.77201 1.90820 1.81060 1.18391 1.47981 1.47706 1.08767 1.10797 1.68582 1.21688 0.80344 1.01441 1.02121 1.21905 1.02046 0.81603 1.01422 0.93146 0.91230 0.95625 0.92703 0.94654 0.94236 0.88870 0.86955 0.87141 0.88232 0.88435 0.88165 0.86528 0.85548 0.92709 0.91000 0.90337 0.91472 0.89904 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.79 37.16 0.33 -3.30 16 2 C 0.23 6.15 1.59 -68.86 -0.11 6.04 16 3 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 4 C -0.52 -14.29 7.71 -34.44 -0.27 -14.55 16 5 H 0.06 1.67 6.64 -52.48 -0.35 1.32 16 6 C 0.07 1.86 5.15 -17.82 -0.09 1.77 16 7 N -0.88 -25.88 12.15 55.43 0.67 -25.21 16 8 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.46 -10.47 4.69 -176.08 -0.83 -11.30 16 13 C 0.04 0.92 8.63 60.06 0.52 1.44 16 14 C 0.40 8.89 6.77 -318.89 -2.16 6.73 16 15 N -0.31 -7.70 9.04 30.31 0.27 -7.42 16 16 N -0.28 -6.15 11.79 32.99 0.39 -5.77 16 17 C 0.19 3.37 7.59 -154.01 -1.17 2.20 16 18 C -0.08 -0.97 5.99 -91.77 -0.55 -1.52 16 19 C -0.15 -1.68 10.15 -26.69 -0.27 -1.95 16 20 C -0.16 -1.84 10.24 -26.69 -0.27 -2.11 16 21 N -0.48 -8.54 2.29 -115.37 -0.26 -8.80 16 22 C 0.10 1.22 4.44 -5.20 -0.02 1.20 16 23 C 0.50 6.62 5.67 -10.99 -0.06 6.56 16 24 O -0.51 -9.21 15.37 5.55 0.09 -9.13 16 25 N -0.62 -5.79 3.27 -189.52 -0.62 -6.41 16 26 C 0.09 0.71 10.41 59.85 0.62 1.33 16 27 C 0.07 0.37 9.74 59.84 0.58 0.95 16 28 H 0.05 1.33 5.62 -51.93 -0.29 1.04 16 29 H 0.07 1.97 6.76 -51.93 -0.35 1.62 16 30 H 0.02 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.69 3.57 -51.93 -0.19 0.50 16 34 H 0.09 1.92 6.34 -51.93 -0.33 1.59 16 35 H 0.11 1.09 7.54 -51.93 -0.39 0.70 16 36 H 0.11 1.45 7.92 -51.93 -0.41 1.03 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.12 0.99 7.16 -51.93 -0.37 0.62 16 41 H 0.13 1.47 7.36 -51.93 -0.38 1.09 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.40 7.92 -51.93 -0.41 -0.02 16 44 H 0.08 0.83 7.42 -51.93 -0.39 0.45 16 45 H 0.07 0.33 7.85 -51.93 -0.41 -0.08 16 46 H 0.08 0.26 7.79 -51.93 -0.40 -0.15 16 47 H 0.06 0.23 7.85 -51.93 -0.41 -0.18 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -36.71 375.31 -9.75 -46.45 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.17 Total: 0.92 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.92 Total: 4.79 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -0.37 Total: -64.91 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.71 -9.75 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411674931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.294 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds