Wall clock time and date at job start Fri Apr 10 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46987 * 2 1 4 4 C 1.50698 * 109.47377 * 240.00737 * 2 1 3 5 5 H 1.08005 * 119.99820 * 245.52613 * 4 2 1 6 6 C 1.37875 * 120.00224 * 65.51905 * 4 2 1 7 7 N 1.31509 * 119.99997 * 9.00375 * 6 4 2 8 8 Si 1.86804 * 120.00156 * 188.99473 * 6 4 2 9 9 H 1.48504 * 109.47058 * 84.99614 * 8 6 4 10 10 H 1.48499 * 109.47027 * 205.00099 * 8 6 4 11 11 H 1.48499 * 109.47044 * 325.00060 * 8 6 4 12 12 N 1.46903 * 109.47644 * 120.00319 * 2 1 3 13 13 C 1.46897 * 111.00075 * 176.04793 * 12 2 1 14 14 C 1.38574 * 110.99376 * 300.00282 * 12 2 1 15 15 N 1.31214 * 126.48093 * 359.68597 * 14 12 2 16 16 N 1.28525 * 109.86407 * 179.82111 * 15 14 12 17 17 C 1.30296 * 110.05280 * 0.45320 * 16 15 14 18 18 C 1.50704 * 126.34747 * 179.76077 * 17 16 15 19 19 C 1.53004 * 117.49547 * 8.70690 * 18 17 16 20 20 C 1.52997 * 117.49812 * 300.04606 * 18 17 16 21 21 N 1.36453 * 126.46809 * 179.97438 * 14 12 2 22 22 C 1.46502 * 127.14092 * 0.02562 * 21 14 12 23 23 C 1.50694 * 109.47476 * 89.97055 * 22 21 14 24 24 O 1.21284 * 119.99800 * 0.02562 * 23 22 21 25 25 N 1.34776 * 120.00281 * 179.97438 * 23 22 21 26 26 C 1.46503 * 119.99958 * 179.97438 * 25 23 22 27 27 C 1.46495 * 120.00043 * 0.02562 * 25 23 22 28 28 H 1.08994 * 109.47278 * 306.44657 * 1 2 3 29 29 H 1.09001 * 109.47037 * 66.45339 * 1 2 3 30 30 H 1.09007 * 109.46622 * 186.44784 * 1 2 3 31 31 H 0.97001 * 120.00238 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47474 * 60.00123 * 13 12 2 33 33 H 1.09003 * 109.46841 * 179.97438 * 13 12 2 34 34 H 1.08997 * 109.47114 * 299.99833 * 13 12 2 35 35 H 1.08993 * 115.54999 * 154.37300 * 18 17 16 36 36 H 1.09000 * 117.50140 * 359.97438 * 19 18 17 37 37 H 1.08996 * 117.49636 * 145.02484 * 19 18 17 38 38 H 1.09003 * 117.49997 * 214.97900 * 20 18 17 39 39 H 1.09005 * 117.50238 * 359.97438 * 20 18 17 40 40 H 1.08998 * 109.47173 * 209.97649 * 22 21 14 41 41 H 1.09004 * 109.46871 * 329.97473 * 22 21 14 42 42 H 1.09006 * 109.46670 * 90.01144 * 26 25 23 43 43 H 1.08997 * 109.47088 * 210.00389 * 26 25 23 44 44 H 1.08998 * 109.47202 * 330.01047 * 26 25 23 45 45 H 1.09003 * 109.47554 * 59.99167 * 27 25 23 46 46 H 1.08997 * 109.47550 * 179.97438 * 27 25 23 47 47 H 1.09003 * 109.46828 * 299.99216 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.5777 -1.6375 -1.1340 6 6 1.7957 -0.1765 -2.4795 7 7 1.2913 1.0327 -2.5931 8 14 2.1918 -1.1707 -4.0106 9 1 1.0484 -2.0623 -4.3314 10 1 2.4362 -0.2496 -5.1495 11 1 3.4059 -1.9908 -3.7679 12 7 2.0198 -0.6926 1.1994 13 6 3.4852 -0.7945 1.1869 14 6 1.5754 -0.0642 2.3518 15 7 0.8233 1.0092 2.4146 16 7 0.6001 1.3148 3.6429 17 6 1.1996 0.4671 4.4302 18 6 1.1864 0.4844 5.9371 19 6 0.2376 1.4688 6.6239 20 6 1.7466 1.7258 6.6342 21 7 1.8418 -0.4418 3.6357 22 6 2.6492 -1.5836 4.0724 23 6 4.0861 -1.1549 4.2221 24 8 4.4044 -0.0083 3.9875 25 7 5.0173 -2.0453 4.6176 26 6 6.4144 -1.6286 4.7625 27 6 4.6328 -3.4300 4.9015 28 1 -0.3633 0.6105 0.8266 29 1 -0.3633 0.4106 -0.9421 30 1 -0.3633 -1.0213 0.1154 31 1 1.1251 1.4084 -3.4718 32 1 3.9188 0.2052 1.1591 33 1 3.8211 -1.3109 2.0862 34 1 3.8030 -1.3530 0.3065 35 1 1.3473 -0.4795 6.4197 36 1 -0.3767 2.1041 5.9859 37 1 -0.2253 1.1526 7.5587 38 1 2.2758 1.5785 7.5757 39 1 2.1252 2.5298 6.0030 40 1 2.2767 -1.9467 5.0302 41 1 2.5830 -2.3800 3.3312 42 1 6.5842 -1.2744 5.7794 43 1 7.0692 -2.4757 4.5588 44 1 6.6290 -0.8255 4.0575 45 1 4.2029 -3.8788 4.0060 46 1 5.5131 -3.9968 5.2048 47 1 3.8962 -3.4451 5.7049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411674931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:16 Heat of formation + Delta-G solvation = 85.872277 kcal Electronic energy + Delta-G solvation = -28916.064864 eV Core-core repulsion = 25136.998296 eV Total energy + Delta-G solvation = -3779.066568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.05627 -41.00905 -39.07953 -37.87409 -36.73077 -35.99876 -34.76501 -31.40907 -30.81316 -30.51905 -28.47116 -27.49915 -26.66191 -26.09285 -24.94260 -23.61124 -23.21262 -21.95035 -20.84456 -20.39996 -18.82807 -18.37589 -18.15667 -17.32645 -17.21807 -16.99691 -16.72279 -16.57272 -16.10009 -15.56920 -15.31727 -15.09996 -14.73617 -14.54975 -14.29038 -13.84770 -13.73473 -13.51541 -13.42838 -13.13661 -13.08920 -12.87746 -12.82881 -12.70470 -12.44641 -12.34707 -12.30590 -12.19837 -12.11616 -11.93901 -11.85183 -11.54034 -11.37917 -10.91447 -10.85209 -10.62677 -10.36617 -9.77524 -9.06368 -8.17663 -6.30554 0.66414 1.18690 1.32277 1.43016 1.46034 1.55035 1.82035 1.95757 2.40121 2.90100 2.95458 3.14434 3.25412 3.32172 3.49037 3.83642 3.84857 3.92520 4.00167 4.12261 4.25233 4.29545 4.36812 4.41162 4.50781 4.61405 4.73236 4.78039 4.78770 4.79722 4.83221 4.90684 4.93992 4.97425 5.04945 5.13108 5.25697 5.30872 5.37126 5.41424 5.47213 5.61499 5.82182 5.89349 6.06352 6.16361 6.51183 6.78930 6.94009 7.37359 7.84710 8.92308 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.004585 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.783264 B = 6105.169209 C = 7782.805779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.241 3.759 3 H -0.029 1.029 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.259 1.259 12 N -0.449 5.449 13 C 0.056 3.944 14 C 0.374 3.626 15 N -0.363 5.363 16 N -0.330 5.330 17 C 0.212 3.788 18 C -0.091 4.091 19 C -0.138 4.138 20 C -0.153 4.153 21 N -0.469 5.469 22 C 0.086 3.914 23 C 0.492 3.508 24 O -0.571 6.571 25 N -0.610 5.610 26 C 0.082 3.918 27 C 0.060 3.940 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.264 0.736 32 H -0.001 1.001 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.064 0.936 40 H 0.169 0.831 41 H 0.140 0.860 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -13.903 23.437 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.136 3.864 3 H -0.011 1.011 4 C -0.569 4.569 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.183 1.183 12 N -0.172 5.172 13 C -0.091 4.091 14 C 0.016 3.984 15 N -0.207 5.207 16 N -0.167 5.167 17 C -0.057 4.057 18 C -0.111 4.111 19 C -0.176 4.176 20 C -0.191 4.191 21 N -0.164 5.164 22 C -0.040 4.040 23 C 0.279 3.721 24 O -0.450 6.450 25 N -0.344 5.344 26 C -0.060 4.060 27 C -0.081 4.081 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.177 0.823 36 H 0.100 0.900 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.187 0.813 41 H 0.158 0.842 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.033 -12.497 22.668 26.823 hybrid contribution 1.149 -0.078 -1.198 1.662 sum 8.182 -12.575 21.470 26.192 Atomic orbital electron populations 1.21671 0.96989 0.98811 1.00251 1.18984 0.92934 0.90426 0.84058 1.01109 1.21286 1.36967 1.08481 0.90141 0.90740 1.25854 0.94888 0.95484 1.02410 1.70167 1.45081 1.15886 1.24769 0.85382 0.79099 0.78259 0.77765 1.19636 1.21316 1.18314 1.59083 1.11459 1.47721 0.98969 1.22322 0.84068 0.99535 1.03187 1.23060 0.98729 0.91459 0.85141 1.74655 1.22061 1.11482 1.12457 1.73769 1.22926 1.23651 0.96388 1.24359 0.96246 0.89053 0.96027 1.20381 1.10487 0.98780 0.81496 1.23099 0.92508 0.99730 1.02216 1.23059 0.97549 0.96512 1.02013 1.45670 1.40751 1.25556 1.04459 1.22138 0.87762 0.87188 1.06884 1.20898 0.88443 0.85626 0.77125 1.90819 1.81939 1.21054 1.51191 1.47839 1.08389 1.11872 1.66292 1.21816 0.80308 1.01926 1.01912 1.22311 1.04105 0.78995 1.02664 0.93675 0.93708 0.94723 0.92720 0.98223 0.90724 0.88769 0.82343 0.89967 0.84021 0.84664 0.91695 0.81324 0.84242 0.91557 0.87693 0.93581 0.90870 0.87394 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.67 8.79 71.98 0.63 -6.03 16 2 C 0.24 13.70 1.59 44.17 0.07 13.77 16 3 H -0.03 -1.93 8.06 -2.39 -0.02 -1.95 16 4 C -0.53 -29.92 7.71 25.60 0.20 -29.72 16 5 H 0.07 3.95 6.64 -2.91 -0.02 3.93 16 6 C 0.01 0.76 5.15 84.65 0.44 1.20 16 7 N -0.92 -56.54 12.15 21.45 0.26 -56.28 16 8 Si 0.97 43.90 29.55 68.60 2.03 45.93 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.45 -21.38 4.69 -711.01 -3.33 -24.71 16 13 C 0.06 2.39 8.63 127.69 1.10 3.49 16 14 C 0.37 17.36 6.77 260.12 1.76 19.12 16 15 N -0.36 -19.04 9.04 -58.01 -0.52 -19.57 16 16 N -0.33 -15.16 11.79 -49.53 -0.58 -15.75 16 17 C 0.21 7.54 7.59 137.64 1.04 8.59 16 18 C -0.09 -2.06 5.99 -11.54 -0.07 -2.13 16 19 C -0.14 -2.73 10.15 30.62 0.31 -2.42 16 20 C -0.15 -3.22 10.24 30.62 0.31 -2.91 16 21 N -0.47 -16.55 2.29 -518.92 -1.19 -17.74 16 22 C 0.09 1.90 4.44 85.63 0.38 2.28 16 23 C 0.49 12.13 5.67 87.66 0.50 12.63 16 24 O -0.57 -20.92 15.37 -3.04 -0.05 -20.96 16 25 N -0.61 -9.33 3.27 -871.90 -2.85 -12.19 16 26 C 0.08 1.16 10.41 127.77 1.33 2.49 16 27 C 0.06 0.30 9.74 127.77 1.24 1.55 16 28 H 0.04 2.55 5.62 -2.39 -0.01 2.54 16 29 H 0.04 2.68 6.76 -2.39 -0.02 2.66 16 30 H 0.03 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.07 2.60 3.57 -2.39 -0.01 2.59 16 34 H 0.09 3.93 6.34 -2.39 -0.02 3.92 16 35 H 0.16 2.12 7.54 -2.39 -0.02 2.10 16 36 H 0.08 2.14 7.92 -2.39 -0.02 2.12 16 37 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.17 1.90 7.16 -2.39 -0.02 1.89 16 41 H 0.14 2.76 7.36 -2.38 -0.02 2.74 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.10 0.77 7.92 -2.39 -0.02 0.75 16 44 H 0.05 0.97 7.42 -2.39 -0.02 0.95 16 45 H 0.07 0.35 7.85 -2.39 -0.02 0.33 16 46 H 0.11 0.07 7.79 -2.39 -0.02 0.05 16 47 H 0.09 0.08 7.85 -2.39 -0.02 0.06 16 Total: -1.00 -89.99 375.31 3.98 -86.01 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.98 Total: 13.36 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 9.25 Total: 21.90 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -8.23 Total: -146.24 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -89.99 3.98 -86.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411674931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.884 kcal (2) G-P(sol) polarization free energy of solvation -89.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds