Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 119.99971 * 2 1 4 4 O 1.21279 * 120.00095 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99931 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47073 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47113 * 180.02562 * 6 5 3 8 8 C 1.36742 * 127.13726 * 86.07192 * 7 6 5 9 9 C 1.50695 * 126.34746 * 0.02562 * 8 7 6 10 10 N 1.30289 * 107.30305 * 179.97438 * 8 7 6 11 11 N 1.28523 * 110.06047 * 0.02562 * 10 8 7 12 12 C 1.31221 * 109.85443 * 359.74340 * 11 10 8 13 13 N 1.38584 * 126.47357 * 180.25592 * 12 11 10 14 14 C 1.46904 * 110.99813 * 107.12747 * 13 12 11 15 15 C 1.50699 * 109.47292 * 298.44746 * 14 13 12 16 16 H 1.08001 * 119.99813 * 5.06117 * 15 14 13 17 17 C 1.37879 * 120.00069 * 185.05347 * 15 14 13 18 18 N 1.31508 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99833 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47355 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46832 * 120.00702 * 19 17 15 22 22 H 1.48504 * 109.47183 * 240.00425 * 19 17 15 23 23 C 1.46897 * 111.00072 * 343.17991 * 13 12 11 24 24 C 1.52996 * 109.47309 * 195.59210 * 23 13 12 25 25 C 1.53002 * 117.50094 * 243.43036 * 24 23 13 26 26 C 1.53004 * 117.50174 * 174.76931 * 24 23 13 27 27 H 1.09003 * 109.47358 * 59.99487 * 1 2 3 28 28 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47183 * 300.00345 * 1 2 3 30 30 H 0.96995 * 120.00264 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46838 * 300.00200 * 5 3 2 32 32 H 1.08994 * 109.47042 * 60.00436 * 5 3 2 33 33 H 1.09004 * 109.46846 * 300.00054 * 6 5 3 34 34 H 1.08996 * 109.46744 * 59.99732 * 6 5 3 35 35 H 1.08998 * 109.47190 * 89.99774 * 9 8 7 36 36 H 1.08995 * 109.47142 * 210.00113 * 9 8 7 37 37 H 1.09006 * 109.47325 * 330.00430 * 9 8 7 38 38 H 1.09005 * 109.47258 * 58.44954 * 14 13 12 39 39 H 1.08993 * 109.47087 * 178.44764 * 14 13 12 40 40 H 0.97002 * 119.99962 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.47010 * 315.58716 * 23 13 12 42 42 H 1.08997 * 109.47732 * 75.58652 * 23 13 12 43 43 H 1.09007 * 115.54866 * 29.09584 * 24 23 13 44 44 H 1.08999 * 117.49358 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.50393 * 145.01326 * 25 24 23 46 46 H 1.09002 * 117.49820 * 214.97696 * 26 24 23 47 47 H 1.08997 * 117.49583 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6098 0.0011 7 7 5.6208 2.6098 0.0011 8 6 6.4463 2.5355 -1.0865 9 6 6.0179 2.4376 -2.5280 10 7 7.6720 2.5662 -0.6456 11 7 7.6771 2.6535 0.6367 12 6 6.4447 2.6891 1.0859 13 7 6.0536 2.7860 2.4119 14 6 5.5208 4.1227 2.7072 15 6 6.5951 5.1540 2.4764 16 1 7.5491 4.8575 2.0661 17 6 6.3601 6.4762 2.7889 18 7 5.1986 6.8372 3.2889 19 14 7.6916 7.7546 2.5022 20 1 8.8959 7.0965 1.9351 21 1 7.1952 8.7816 1.5513 22 1 8.0419 8.4023 3.7918 23 6 7.1635 2.4507 3.3139 24 6 6.6174 2.1879 4.7187 25 6 7.0623 3.1318 5.8377 26 6 7.6052 1.7016 5.7812 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 4.0088 0.6536 0.8908 32 1 4.0095 0.6533 -0.8891 33 1 3.7928 3.1238 -0.8889 34 1 3.7921 3.1233 0.8910 35 1 5.9149 3.4393 -2.9453 36 1 6.7676 1.8839 -3.0930 37 1 5.0611 1.9189 -2.5883 38 1 4.6731 4.3286 2.0535 39 1 5.1960 4.1629 3.7468 40 1 5.0333 7.7674 3.5091 41 1 7.6715 1.5580 2.9488 42 1 7.8682 3.2815 3.3476 43 1 5.5996 1.7999 4.7625 44 1 7.7445 3.9397 5.5730 45 1 6.3376 3.3646 6.6178 46 1 7.2372 0.9940 6.5242 47 1 8.6440 1.5685 5.4792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411835798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = 73.698558 kcal Electronic energy + Delta-G solvation = -28284.657815 eV Core-core repulsion = 24505.063354 eV Total energy + Delta-G solvation = -3779.594460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31309 -39.80920 -37.83344 -35.60903 -35.20819 -34.71204 -32.59473 -31.41405 -30.76285 -27.68208 -27.23995 -26.77169 -25.31057 -24.10003 -22.50652 -21.82976 -20.84276 -20.67197 -19.89242 -19.34730 -17.64050 -16.75897 -16.23881 -16.01086 -15.90539 -15.74150 -15.29393 -14.99920 -14.42969 -14.26492 -13.81865 -13.70361 -13.52482 -13.16083 -12.88338 -12.82682 -12.62337 -12.53570 -12.45642 -12.21122 -11.78381 -11.46152 -11.27650 -11.14792 -10.99845 -10.89112 -10.69376 -10.54723 -10.17941 -10.15300 -9.99626 -9.83128 -9.62901 -9.49895 -9.37391 -9.27176 -8.69123 -8.49211 -7.40929 -6.10513 -4.17120 2.40068 2.46817 2.66938 3.18241 3.27076 3.35620 3.44334 3.57401 4.26830 4.40702 4.50473 4.66586 4.73886 4.79144 4.86996 5.04081 5.15599 5.23558 5.25742 5.31947 5.36139 5.45631 5.52792 5.56036 5.56667 5.61765 5.81193 5.86253 5.94835 6.00963 6.09928 6.14107 6.16105 6.37861 6.44068 6.48536 6.66968 6.70666 6.92613 7.03860 7.19699 7.30641 7.34098 7.60604 7.85371 8.01104 8.08178 8.18497 8.91805 9.47868 9.50907 10.96269 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.004501 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.924980 B = 6219.765779 C = 6716.872204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.519 3.481 4 O -0.531 6.531 5 C -0.154 4.154 6 C 0.130 3.870 7 N -0.477 5.477 8 C 0.148 3.852 9 C -0.056 4.056 10 N -0.289 5.289 11 N -0.334 5.334 12 C 0.411 3.589 13 N -0.467 5.467 14 C 0.192 3.808 15 C -0.549 4.549 16 H 0.069 0.931 17 C 0.071 3.929 18 N -0.889 5.889 19 Si 0.887 3.113 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.108 3.892 24 C -0.134 4.134 25 C -0.168 4.168 26 C -0.187 4.187 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.402 0.598 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.056 0.944 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 -15.992 -5.390 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.391 5.391 3 C 0.305 3.695 4 O -0.406 6.406 5 C -0.195 4.195 6 C 0.006 3.994 7 N -0.172 5.172 8 C -0.120 4.120 9 C -0.115 4.115 10 N -0.129 5.129 11 N -0.178 5.178 12 C 0.055 3.945 13 N -0.191 5.191 14 C 0.069 3.931 15 C -0.588 4.588 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.019 4.019 24 C -0.153 4.153 25 C -0.205 4.205 26 C -0.225 4.225 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.120 -15.389 -5.222 17.365 hybrid contribution -0.186 1.026 -0.112 1.049 sum -6.306 -14.363 -5.335 16.568 Atomic orbital electron populations 1.21536 0.79526 1.02108 1.02515 1.45789 1.07841 1.08727 1.76701 1.20455 0.89714 0.83710 0.75626 1.90769 1.70399 1.31067 1.48397 1.21971 0.92203 0.99751 1.05557 1.21465 0.75742 0.95550 1.06632 1.45996 1.07623 1.57258 1.06366 1.24450 0.87432 1.08584 0.91530 1.20049 1.01576 1.03391 0.86530 1.73821 1.17318 1.17729 1.03998 1.74630 1.16337 1.24249 1.02542 1.22579 0.85472 0.98227 0.88247 1.59362 1.32143 1.31982 0.95621 1.19991 0.95001 0.79607 0.98522 1.21769 1.00872 0.92892 1.43283 0.91330 1.24874 0.95425 0.98434 0.94530 1.69941 1.22231 1.17567 1.42966 0.86584 0.82441 0.81513 0.77958 1.19452 1.21001 1.20784 1.21426 0.91071 1.00790 0.88641 1.22121 0.98892 1.03825 0.90459 1.22977 1.03521 0.92879 1.01158 1.22943 0.99121 0.98160 1.02228 0.92218 0.90741 0.92055 0.76420 0.87580 0.88499 0.88741 0.86941 0.90258 0.89333 0.91296 0.95469 0.92600 0.92774 0.91556 0.91169 0.87879 0.88373 0.89441 0.89482 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.70 59.84 0.64 1.28 16 2 N -0.74 -6.08 5.71 -67.08 -0.38 -6.46 16 3 C 0.52 6.18 7.83 -10.98 -0.09 6.09 16 4 O -0.53 -8.63 15.98 5.56 0.09 -8.54 16 5 C -0.15 -1.73 6.02 -27.88 -0.17 -1.90 16 6 C 0.13 2.01 5.08 -4.04 -0.02 1.98 16 7 N -0.48 -8.70 2.81 -114.09 -0.32 -9.02 16 8 C 0.15 2.60 8.07 -154.02 -1.24 1.36 16 9 C -0.06 -0.66 10.16 36.00 0.37 -0.30 16 10 N -0.29 -6.16 12.18 32.99 0.40 -5.76 16 11 N -0.33 -7.70 11.01 30.32 0.33 -7.36 16 12 C 0.41 8.79 5.83 -318.87 -1.86 6.93 16 13 N -0.47 -9.85 4.69 -175.88 -0.83 -10.67 16 14 C 0.19 4.74 4.81 -4.97 -0.02 4.72 16 15 C -0.55 -15.07 7.53 -34.44 -0.26 -15.33 16 16 H 0.07 1.99 6.43 -52.49 -0.34 1.65 16 17 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 18 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 19 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.11 2.14 4.57 -3.83 -0.02 2.13 16 24 C -0.13 -2.30 5.06 -90.62 -0.46 -2.76 16 25 C -0.17 -2.84 10.18 -26.69 -0.27 -3.11 16 26 C -0.19 -2.69 10.26 -26.69 -0.27 -2.97 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.40 2.07 8.83 -40.82 -0.36 1.71 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 0.86 8.01 -51.93 -0.42 0.44 16 33 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 34 H 0.11 2.06 6.12 -51.93 -0.32 1.75 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 38 H 0.03 0.72 6.27 -51.93 -0.33 0.39 16 39 H 0.06 1.45 7.43 -51.93 -0.39 1.07 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 42 H 0.07 1.59 6.18 -51.93 -0.32 1.27 16 43 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 44 H 0.10 1.82 8.03 -51.93 -0.42 1.40 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -34.84 388.76 -10.37 -45.21 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.47 Total: 4.55 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.77 Total: 0.02 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.06 Total: -64.21 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.84 -10.37 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411835798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.908 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds