Wall clock time and date at job start Fri Apr 10 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 119.99971 * 2 1 4 4 O 1.21279 * 120.00095 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99931 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47073 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47113 * 180.02562 * 6 5 3 8 8 C 1.36742 * 127.13726 * 86.07192 * 7 6 5 9 9 C 1.50695 * 126.34746 * 0.02562 * 8 7 6 10 10 N 1.30289 * 107.30305 * 179.97438 * 8 7 6 11 11 N 1.28523 * 110.06047 * 0.02562 * 10 8 7 12 12 C 1.31221 * 109.85443 * 359.74340 * 11 10 8 13 13 N 1.38584 * 126.47357 * 180.25592 * 12 11 10 14 14 C 1.46904 * 110.99813 * 107.12747 * 13 12 11 15 15 C 1.50699 * 109.47292 * 298.44746 * 14 13 12 16 16 H 1.08001 * 119.99813 * 5.06117 * 15 14 13 17 17 C 1.37879 * 120.00069 * 185.05347 * 15 14 13 18 18 N 1.31508 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99833 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47355 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46832 * 120.00702 * 19 17 15 22 22 H 1.48504 * 109.47183 * 240.00425 * 19 17 15 23 23 C 1.46897 * 111.00072 * 343.17991 * 13 12 11 24 24 C 1.52996 * 109.47309 * 195.59210 * 23 13 12 25 25 C 1.53002 * 117.50094 * 243.43036 * 24 23 13 26 26 C 1.53004 * 117.50174 * 174.76931 * 24 23 13 27 27 H 1.09003 * 109.47358 * 59.99487 * 1 2 3 28 28 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47183 * 300.00345 * 1 2 3 30 30 H 0.96995 * 120.00264 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46838 * 300.00200 * 5 3 2 32 32 H 1.08994 * 109.47042 * 60.00436 * 5 3 2 33 33 H 1.09004 * 109.46846 * 300.00054 * 6 5 3 34 34 H 1.08996 * 109.46744 * 59.99732 * 6 5 3 35 35 H 1.08998 * 109.47190 * 89.99774 * 9 8 7 36 36 H 1.08995 * 109.47142 * 210.00113 * 9 8 7 37 37 H 1.09006 * 109.47325 * 330.00430 * 9 8 7 38 38 H 1.09005 * 109.47258 * 58.44954 * 14 13 12 39 39 H 1.08993 * 109.47087 * 178.44764 * 14 13 12 40 40 H 0.97002 * 119.99962 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.47010 * 315.58716 * 23 13 12 42 42 H 1.08997 * 109.47732 * 75.58652 * 23 13 12 43 43 H 1.09007 * 115.54866 * 29.09584 * 24 23 13 44 44 H 1.08999 * 117.49358 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.50393 * 145.01326 * 25 24 23 46 46 H 1.09002 * 117.49820 * 214.97696 * 26 24 23 47 47 H 1.08997 * 117.49583 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6098 0.0011 7 7 5.6208 2.6098 0.0011 8 6 6.4463 2.5355 -1.0865 9 6 6.0179 2.4376 -2.5280 10 7 7.6720 2.5662 -0.6456 11 7 7.6771 2.6535 0.6367 12 6 6.4447 2.6891 1.0859 13 7 6.0536 2.7860 2.4119 14 6 5.5208 4.1227 2.7072 15 6 6.5951 5.1540 2.4764 16 1 7.5491 4.8575 2.0661 17 6 6.3601 6.4762 2.7889 18 7 5.1986 6.8372 3.2889 19 14 7.6916 7.7546 2.5022 20 1 8.8959 7.0965 1.9351 21 1 7.1952 8.7816 1.5513 22 1 8.0419 8.4023 3.7918 23 6 7.1635 2.4507 3.3139 24 6 6.6174 2.1879 4.7187 25 6 7.0623 3.1318 5.8377 26 6 7.6052 1.7016 5.7812 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 4.0088 0.6536 0.8908 32 1 4.0095 0.6533 -0.8891 33 1 3.7928 3.1238 -0.8889 34 1 3.7921 3.1233 0.8910 35 1 5.9149 3.4393 -2.9453 36 1 6.7676 1.8839 -3.0930 37 1 5.0611 1.9189 -2.5883 38 1 4.6731 4.3286 2.0535 39 1 5.1960 4.1629 3.7468 40 1 5.0333 7.7674 3.5091 41 1 7.6715 1.5580 2.9488 42 1 7.8682 3.2815 3.3476 43 1 5.5996 1.7999 4.7625 44 1 7.7445 3.9397 5.5730 45 1 6.3376 3.3646 6.6178 46 1 7.2372 0.9940 6.5242 47 1 8.6440 1.5685 5.4792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411835798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:30 Heat of formation + Delta-G solvation = 50.921724 kcal Electronic energy + Delta-G solvation = -28285.645492 eV Core-core repulsion = 24505.063354 eV Total energy + Delta-G solvation = -3780.582138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.84927 -40.76514 -39.40757 -37.10603 -36.51260 -35.61780 -34.69811 -32.67366 -31.99381 -29.57323 -28.34331 -27.92834 -27.09192 -25.27300 -24.31351 -23.12578 -22.27341 -21.67236 -21.29023 -20.86005 -18.83980 -18.55900 -17.60602 -17.45914 -17.07799 -16.89849 -16.69120 -16.50211 -16.16694 -15.49042 -15.20571 -14.87730 -14.71451 -14.57820 -14.40357 -13.93631 -13.83205 -13.59065 -13.48555 -13.29457 -13.18345 -13.09971 -13.04799 -12.70531 -12.54898 -12.35021 -12.31002 -12.29296 -12.07502 -11.93536 -11.28895 -11.25182 -11.16600 -10.90611 -10.71890 -10.65476 -10.37182 -10.14924 -9.13640 -8.26866 -6.40270 0.90444 1.25942 1.29158 1.35642 1.41810 1.55035 1.96275 2.29981 2.31235 2.89856 3.02494 3.13215 3.54482 3.59263 3.63218 3.92292 3.98828 4.07039 4.16762 4.19338 4.26901 4.33133 4.41886 4.50922 4.60609 4.63901 4.67850 4.72613 4.75672 4.84580 4.94655 4.97666 5.00352 5.03869 5.10847 5.17918 5.19632 5.24370 5.35082 5.40187 5.41712 5.64292 5.73355 5.89373 6.02173 6.47867 6.49578 6.74043 7.20702 7.29311 7.91066 8.78267 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.004501 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.924980 B = 6219.765779 C = 6716.872204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.519 3.481 4 O -0.582 6.582 5 C -0.139 4.139 6 C 0.129 3.871 7 N -0.475 5.475 8 C 0.169 3.831 9 C -0.057 4.057 10 N -0.331 5.331 11 N -0.365 5.365 12 C 0.387 3.613 13 N -0.454 5.454 14 C 0.215 3.785 15 C -0.551 4.551 16 H 0.049 0.951 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.942 3.058 20 H -0.281 1.281 21 H -0.278 1.278 22 H -0.269 1.269 23 C 0.117 3.883 24 C -0.150 4.150 25 C -0.184 4.184 26 C -0.149 4.149 27 H 0.053 0.947 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.421 0.579 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.008 0.992 39 H 0.040 0.960 40 H 0.266 0.734 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -18.188 -6.401 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.372 5.372 3 C 0.305 3.695 4 O -0.462 6.462 5 C -0.179 4.179 6 C 0.006 3.994 7 N -0.169 5.169 8 C -0.099 4.099 9 C -0.116 4.116 10 N -0.171 5.171 11 N -0.208 5.208 12 C 0.029 3.971 13 N -0.178 5.178 14 C 0.090 3.910 15 C -0.590 4.590 16 H 0.067 0.933 17 C -0.173 4.173 18 N -0.554 5.554 19 Si 0.768 3.232 20 H -0.206 1.206 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.011 4.011 24 C -0.168 4.168 25 C -0.221 4.221 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.258 0.742 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.137 0.863 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.657 -17.650 -6.240 19.869 hybrid contribution -0.044 1.654 0.105 1.658 sum -6.701 -15.995 -6.135 18.395 Atomic orbital electron populations 1.21688 0.78648 1.04332 1.01415 1.45681 1.08450 1.08453 1.74611 1.20525 0.89850 0.83934 0.75148 1.90759 1.71256 1.33043 1.51164 1.21834 0.91830 0.96912 1.07339 1.21539 0.74025 0.98419 1.05446 1.46225 1.08590 1.56385 1.05737 1.25588 0.86352 1.04575 0.93427 1.20396 1.03864 1.04830 0.82501 1.73751 1.19453 1.20496 1.03352 1.74511 1.17601 1.24910 1.03815 1.22646 0.85943 0.99778 0.88754 1.59329 1.32605 1.29641 0.96203 1.19529 0.93659 0.81019 0.96835 1.21848 1.00585 0.93830 1.42779 0.93329 1.25510 0.97160 1.00072 0.94511 1.70013 1.23461 1.18123 1.43780 0.85748 0.79707 0.79417 0.78332 1.20639 1.20363 1.19383 1.21340 0.90216 0.99379 0.90132 1.22078 1.00052 1.05407 0.89293 1.22942 1.03955 0.93789 1.01450 1.23040 0.98743 0.96428 1.00430 0.92873 0.86829 0.93687 0.74242 0.87374 0.84998 0.87602 0.90488 0.89294 0.87338 0.87850 0.97451 0.94219 0.92443 0.91045 0.94728 0.87344 0.90922 0.88546 0.86301 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.40 16 2 N -0.72 -10.04 5.71 -484.52 -2.77 -12.81 16 3 C 0.52 11.62 7.83 87.66 0.69 12.30 16 4 O -0.58 -18.97 15.98 -3.03 -0.05 -19.02 16 5 C -0.14 -2.85 6.02 29.85 0.18 -2.67 16 6 C 0.13 3.93 5.08 86.38 0.44 4.36 16 7 N -0.47 -17.21 2.81 -514.86 -1.45 -18.65 16 8 C 0.17 5.76 8.07 137.64 1.11 6.87 16 9 C -0.06 -1.16 10.16 71.23 0.72 -0.43 16 10 N -0.33 -14.17 12.18 -49.54 -0.60 -14.78 16 11 N -0.36 -17.27 11.01 -58.00 -0.64 -17.91 16 12 C 0.39 16.95 5.83 260.11 1.52 18.47 16 13 N -0.45 -19.88 4.69 -710.36 -3.33 -23.21 16 14 C 0.21 11.09 4.81 85.56 0.41 11.50 16 15 C -0.55 -31.51 7.53 25.60 0.19 -31.31 16 16 H 0.05 2.95 6.43 -2.91 -0.02 2.94 16 17 C 0.03 1.62 5.46 84.66 0.46 2.08 16 18 N -0.91 -54.04 13.29 21.45 0.28 -53.76 16 19 Si 0.94 46.45 29.54 68.60 2.03 48.48 16 20 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.12 4.79 4.57 86.30 0.39 5.19 16 24 C -0.15 -5.16 5.06 -10.79 -0.05 -5.21 16 25 C -0.18 -6.27 10.18 30.62 0.31 -5.96 16 26 C -0.15 -4.05 10.26 30.62 0.31 -3.73 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.42 2.82 8.83 -92.71 -0.82 2.01 16 31 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.13 1.79 8.01 -2.39 -0.02 1.77 16 33 H 0.11 2.96 7.99 -2.38 -0.02 2.94 16 34 H 0.08 2.95 6.12 -2.39 -0.01 2.94 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 1.41 7.84 -2.38 -0.02 1.39 16 38 H 0.01 0.42 6.27 -2.38 -0.01 0.40 16 39 H 0.04 2.17 7.43 -2.39 -0.02 2.15 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.07 2.81 7.81 -2.38 -0.02 2.80 16 42 H 0.03 1.66 6.18 -2.39 -0.01 1.64 16 43 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 44 H 0.07 2.83 8.03 -2.39 -0.02 2.81 16 45 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 46 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -80.37 388.76 1.69 -78.68 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.16 Total: 19.12 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 8.06 Total: 13.85 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -8.50 Total: -141.12 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -80.37 1.69 -78.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411835798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.602 kcal (2) G-P(sol) polarization free energy of solvation -80.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds