Wall clock time and date at job start Fri Apr 10 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99889 * 2 1 4 4 O 1.21274 * 120.00313 * 354.88811 * 3 2 1 5 5 C 1.50697 * 119.99503 * 174.88611 * 3 2 1 6 6 C 1.50699 * 115.55471 * 293.51181 * 5 3 2 7 7 O 1.21283 * 119.99632 * 99.28134 * 6 5 3 8 8 N 1.34773 * 120.00604 * 279.28889 * 6 5 3 9 9 C 1.47670 * 134.45807 * 175.12036 * 8 6 5 10 10 C 1.53456 * 86.09324 * 155.77382 * 9 8 6 11 11 C 1.47921 * 134.54266 * 355.05565 * 8 6 5 12 12 C 1.52643 * 113.67257 * 137.83153 * 10 9 8 13 13 C 1.53188 * 109.34524 * 74.01468 * 12 10 9 14 14 C 1.53155 * 109.34758 * 59.07083 * 13 12 10 15 15 N 1.46891 * 109.09290 * 303.54309 * 14 13 12 16 16 C 1.36936 * 120.68920 * 235.31076 * 15 14 13 17 17 H 1.08000 * 119.99765 * 149.28935 * 16 15 14 18 18 C 1.38807 * 120.00035 * 329.29759 * 16 15 14 19 19 N 1.31624 * 120.00059 * 162.10735 * 18 16 15 20 20 Si 1.86798 * 119.99903 * 342.11534 * 18 16 15 21 21 H 1.48504 * 109.47477 * 90.30873 * 20 18 16 22 22 H 1.48508 * 109.46935 * 210.30544 * 20 18 16 23 23 H 1.48498 * 109.47434 * 330.30231 * 20 18 16 24 24 C 1.47122 * 118.62734 * 55.34158 * 15 14 13 25 25 C 1.52999 * 117.51787 * 79.21909 * 5 3 2 26 26 C 1.52998 * 60.00332 * 107.47685 * 25 5 3 27 27 H 1.08999 * 109.46911 * 60.00046 * 1 2 3 28 28 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47261 * 300.00851 * 1 2 3 30 30 H 0.96998 * 119.99892 * 179.97438 * 2 1 3 31 31 H 1.09003 * 113.78984 * 41.45296 * 9 8 6 32 32 H 1.09002 * 113.79479 * 270.09702 * 9 8 6 33 33 H 1.09002 * 113.68179 * 89.95846 * 11 8 6 34 34 H 1.08998 * 113.96727 * 318.53467 * 11 8 6 35 35 H 1.08993 * 109.49323 * 193.98294 * 12 10 9 36 36 H 1.09006 * 109.49058 * 314.05912 * 12 10 9 37 37 H 1.08993 * 109.49220 * 179.03145 * 13 12 10 38 38 H 1.09001 * 109.49228 * 299.09053 * 13 12 10 39 39 H 1.08997 * 109.53050 * 63.42632 * 14 13 12 40 40 H 1.09001 * 109.53204 * 183.58382 * 14 13 12 41 41 H 0.97000 * 119.99748 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.63806 * 188.92727 * 24 15 14 43 43 H 1.09002 * 109.63863 * 68.30654 * 24 15 14 44 44 H 1.09003 * 117.50101 * 214.96644 * 25 5 3 45 45 H 1.09001 * 117.49737 * 359.97438 * 25 5 3 46 46 H 1.08998 * 117.50044 * 252.51261 * 26 25 5 47 47 H 1.08999 * 117.49642 * 107.48458 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2154 -0.0936 5 6 3.6414 1.1697 0.1163 6 6 4.1923 0.6845 1.4324 7 8 4.6018 -0.4524 1.5362 8 7 4.2299 1.5138 2.4942 9 6 4.6032 1.3592 3.9145 10 6 4.8784 2.8688 3.8977 11 6 3.9153 2.9436 2.7056 12 6 4.3746 3.5975 5.1408 13 6 5.2949 3.2794 6.3234 14 6 6.7225 3.7217 5.9886 15 7 7.1507 3.0636 4.7471 16 6 8.2982 2.3173 4.7115 17 1 8.3740 1.4750 4.0398 18 6 9.3640 2.6433 5.5389 19 7 10.3093 1.7581 5.7742 20 14 9.4567 4.3383 6.3186 21 1 8.7719 4.3153 7.6361 22 1 10.8797 4.7193 6.5069 23 1 8.7925 5.3277 5.4326 24 6 6.3214 3.2235 3.5424 25 6 4.4486 0.8579 -1.1454 26 6 4.4035 2.2866 -0.5998 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 5.4944 0.7515 4.0712 32 1 3.7726 1.0707 4.5587 33 1 2.8786 3.1266 2.9885 34 1 4.2589 3.5960 1.9029 35 1 4.3754 4.6719 4.9580 36 1 3.3611 3.2679 5.3699 37 1 4.9472 3.8122 7.2084 38 1 5.2820 2.2066 6.5161 39 1 6.7470 4.8031 5.8551 40 1 7.3915 3.4394 6.8015 41 1 11.0543 1.9861 6.3520 42 1 6.6805 2.5558 2.7593 43 1 6.3706 4.2566 3.1982 44 1 5.3781 0.3018 -1.0237 45 1 3.8929 0.6505 -2.0599 46 1 3.8181 3.0193 -1.1553 47 1 5.3033 2.6703 -0.1190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485664110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:34 Heat of formation + Delta-G solvation = -4.194473 kcal Electronic energy + Delta-G solvation = -28600.553211 eV Core-core repulsion = 24785.288305 eV Total energy + Delta-G solvation = -3815.264907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15965 -41.08942 -39.57809 -37.68647 -37.10987 -35.69248 -34.59251 -32.76769 -31.68768 -28.78145 -28.01878 -27.36290 -27.10627 -25.02897 -23.75200 -23.50166 -23.02264 -22.08821 -20.39567 -19.38996 -18.88107 -18.68823 -17.52982 -17.30795 -17.12276 -17.03568 -16.65591 -16.03752 -15.78917 -15.67806 -15.41920 -15.08493 -14.96760 -14.62645 -14.40349 -14.23222 -13.90953 -13.80915 -13.57681 -13.40137 -13.22700 -13.17169 -12.95666 -12.66521 -12.56905 -12.38149 -12.26881 -12.02689 -11.81968 -11.61384 -11.48727 -11.39355 -11.15049 -11.11288 -10.75963 -10.63341 -10.25385 -9.80600 -8.87246 -8.16418 -5.52791 1.09102 1.31277 1.42435 1.46777 1.52548 1.67407 2.04480 2.42284 2.58775 3.03226 3.17813 3.20395 3.52523 3.55223 3.65963 3.73346 3.82127 3.98152 4.16064 4.24892 4.33264 4.37832 4.42925 4.50176 4.54552 4.57212 4.57649 4.68257 4.73304 4.77743 4.81076 4.84833 4.87953 4.88685 4.99890 5.04227 5.10827 5.12008 5.23351 5.28445 5.35963 5.53599 5.88244 6.12805 6.30406 6.59246 6.92869 6.93698 6.99919 7.62195 8.02539 9.04122 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.003570 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.614134 B = 7842.045107 C = 8315.740840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.722 5.722 3 C 0.564 3.436 4 O -0.554 6.554 5 C -0.202 4.202 6 C 0.571 3.429 7 O -0.576 6.576 8 N -0.635 5.635 9 C 0.121 3.879 10 C -0.097 4.097 11 C 0.126 3.874 12 C -0.087 4.087 13 C -0.129 4.129 14 C 0.115 3.885 15 N -0.616 5.616 16 C -0.246 4.246 17 H 0.035 0.965 18 C -0.036 4.036 19 N -0.963 5.963 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.315 1.315 23 H -0.256 1.256 24 C 0.174 3.826 25 C -0.119 4.119 26 C -0.122 4.122 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.413 0.587 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.261 0.739 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.104 0.896 45 H 0.132 0.868 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.185 2.875 -10.439 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.373 5.373 3 C 0.349 3.651 4 O -0.432 6.432 5 C -0.208 4.208 6 C 0.360 3.640 7 O -0.456 6.456 8 N -0.368 5.368 9 C -0.001 4.001 10 C -0.100 4.100 11 C 0.004 3.996 12 C -0.125 4.125 13 C -0.168 4.168 14 C -0.009 4.009 15 N -0.341 5.341 16 C -0.376 4.376 17 H 0.053 0.947 18 C -0.231 4.231 19 N -0.609 5.609 20 Si 0.787 3.213 21 H -0.196 1.196 22 H -0.244 1.244 23 H -0.180 1.180 24 C 0.049 3.951 25 C -0.156 4.156 26 C -0.160 4.160 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.248 0.752 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.122 0.878 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.315 2.849 -10.536 24.841 hybrid contribution 1.243 -0.454 0.625 1.463 sum -21.072 2.395 -9.911 23.409 Atomic orbital electron populations 1.21764 0.77600 1.04483 1.02055 1.45831 1.08946 1.08471 1.74027 1.18980 0.86587 0.84012 0.75544 1.90686 1.69647 1.32373 1.50464 1.21277 0.92916 1.12820 0.93818 1.19109 0.77579 0.83638 0.83720 1.90701 1.49872 1.20467 1.84560 1.50150 1.64624 1.13151 1.08844 1.23191 0.99308 0.97368 0.80241 1.22473 0.96205 0.94345 0.96938 1.23466 0.99976 0.79673 0.96510 1.21325 0.98754 1.00874 0.91543 1.21933 0.94720 1.01156 0.98967 1.21470 0.96023 0.95451 0.87970 1.44382 1.24216 1.59271 1.06206 1.18693 0.91389 1.05770 1.21754 0.94708 1.26044 0.95348 1.01242 1.00427 1.69978 1.14367 1.35710 1.40834 0.85749 0.74961 0.81700 0.78933 1.19609 1.24401 1.18030 1.20698 0.87952 0.98460 0.87976 1.23194 1.00623 0.98478 0.93351 1.23164 1.00599 0.92069 1.00146 0.91900 0.87353 0.92848 0.75151 0.93653 0.88049 0.87141 0.88497 0.89684 0.89109 0.89494 0.93252 0.94250 0.93745 0.92977 0.94428 0.93471 0.87798 0.85022 0.85631 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.71 127.77 1.37 2.46 16 2 N -0.72 -12.99 5.71 -484.53 -2.77 -15.76 16 3 C 0.56 13.10 7.06 87.66 0.62 13.72 16 4 O -0.55 -15.35 16.73 -3.01 -0.05 -15.40 16 5 C -0.20 -4.78 2.00 -53.67 -0.11 -4.89 16 6 C 0.57 17.83 7.20 87.66 0.63 18.47 16 7 O -0.58 -22.47 17.74 -3.04 -0.05 -22.53 16 8 N -0.63 -18.65 3.48 -839.90 -2.93 -21.57 16 9 C 0.12 3.80 7.62 86.30 0.66 4.46 16 10 C -0.10 -2.70 0.87 -52.04 -0.05 -2.75 16 11 C 0.13 2.84 7.77 86.25 0.67 3.51 16 12 C -0.09 -1.99 5.07 30.54 0.15 -1.83 16 13 C -0.13 -3.77 6.01 30.71 0.18 -3.59 16 14 C 0.12 4.55 4.16 86.36 0.36 4.90 16 15 N -0.62 -28.15 2.74 -699.54 -1.91 -30.06 16 16 C -0.25 -14.18 10.04 84.03 0.84 -13.34 16 17 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 18 C -0.04 -2.14 5.26 84.86 0.45 -1.69 16 19 N -0.96 -61.80 13.97 21.65 0.30 -61.50 16 20 Si 0.96 46.40 24.36 68.60 1.67 48.08 16 21 H -0.27 -12.16 6.55 99.48 0.65 -11.51 16 22 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 23 H -0.26 -11.64 6.74 99.48 0.67 -10.97 16 24 C 0.17 6.42 5.63 86.19 0.48 6.90 16 25 C -0.12 -2.27 9.86 30.59 0.30 -1.97 16 26 C -0.12 -2.42 9.44 30.60 0.29 -2.13 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.41 6.63 8.83 -92.71 -0.82 5.81 16 31 H 0.04 1.86 8.09 -2.39 -0.02 1.84 16 32 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 33 H 0.11 2.02 8.09 -2.39 -0.02 2.00 16 34 H 0.10 1.98 7.77 -2.39 -0.02 1.97 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.57 8.12 -2.38 -0.02 1.55 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16 39 H 0.04 1.46 7.17 -2.39 -0.02 1.44 16 40 H 0.04 1.99 4.53 -2.39 -0.01 1.98 16 41 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.13 2.19 8.01 -2.39 -0.02 2.17 16 47 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -79.44 377.90 1.18 -78.26 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.06 Total: 18.26 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 6.86 Total: 22.22 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -7.30 Total: -128.89 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.10 Total: -37.92 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.08 kcal Total: -79.44 1.18 -78.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485664110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.064 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds