Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34956 * 126.03404 * 2 1 4 4 C 1.35313 * 107.74136 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.03461 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.49229 * 339.94419 * 5 4 3 7 7 C 1.53236 * 109.49282 * 99.99889 * 5 4 3 8 8 N 1.47086 * 108.52150 * 173.78953 * 7 5 4 9 9 C 1.34768 * 120.88221 * 128.54261 * 8 7 5 10 10 O 1.21279 * 120.00128 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00043 * 180.02562 * 9 8 7 12 12 H 1.08995 * 109.47258 * 39.99339 * 11 9 8 13 13 N 1.46900 * 109.47509 * 159.99582 * 11 9 8 14 14 C 1.52998 * 109.46744 * 279.99606 * 11 9 8 15 15 C 1.53001 * 109.47241 * 174.99951 * 14 11 9 16 16 C 1.50697 * 109.47423 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00073 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00330 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99931 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00236 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46817 * 90.00144 * 20 18 16 22 22 H 1.48494 * 109.47087 * 210.00101 * 20 18 16 23 23 H 1.48497 * 109.47180 * 330.00324 * 20 18 16 24 24 C 1.47082 * 118.23312 * 308.81145 * 8 7 5 25 25 C 1.53241 * 108.52213 * 51.18756 * 24 8 7 26 26 N 1.46897 * 109.48920 * 219.86065 * 5 4 3 27 27 C 1.39859 * 107.92515 * 0.25842 * 4 3 2 28 28 N 1.30839 * 108.20372 * 359.55808 * 27 4 3 29 29 H 1.09002 * 109.46983 * 90.00655 * 1 2 3 30 30 H 1.08999 * 109.46885 * 209.99948 * 1 2 3 31 31 H 1.08995 * 109.47598 * 330.00266 * 1 2 3 32 32 H 1.08001 * 126.12415 * 359.95381 * 3 2 1 33 33 H 1.09003 * 109.63185 * 54.07998 * 7 5 4 34 34 H 1.08999 * 109.79124 * 293.58867 * 7 5 4 35 35 H 1.00901 * 110.99545 * 59.99389 * 13 11 9 36 36 H 1.00900 * 111.00174 * 183.95035 * 13 11 9 37 37 H 1.08997 * 109.47551 * 294.99824 * 14 11 9 38 38 H 1.09002 * 109.47379 * 55.00231 * 14 11 9 39 39 H 1.09007 * 109.47155 * 300.00045 * 15 14 11 40 40 H 1.09006 * 109.47186 * 59.99888 * 15 14 11 41 41 H 0.97003 * 120.00446 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.62701 * 170.88914 * 24 8 7 43 43 H 1.08998 * 109.63121 * 291.47589 * 24 8 7 44 44 H 1.08993 * 109.49594 * 186.20872 * 25 24 8 45 45 H 1.08998 * 109.51499 * 66.13549 * 25 24 8 46 46 H 1.00906 * 110.99860 * 52.79128 * 26 5 4 47 47 H 1.08008 * 125.90484 * 179.73697 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5455 0.0013 6 1 4.5007 2.5417 -0.3510 7 6 5.3289 1.6397 1.4242 8 7 6.6017 2.3752 1.3769 9 6 6.8247 3.4250 2.1921 10 8 5.9698 3.7750 2.9779 11 6 8.1360 4.1648 2.1264 12 1 8.4450 4.2650 1.0860 13 7 7.9760 5.4988 2.7204 14 6 9.2004 3.3857 2.9016 15 6 10.5583 4.0700 2.7316 16 6 11.6065 3.3030 3.4957 17 1 11.3319 2.4159 4.0470 18 6 12.9165 3.7331 3.4900 19 7 13.2511 4.8130 2.8183 20 14 14.2158 2.7827 4.4377 21 1 14.8125 1.7470 3.5565 22 1 15.2770 3.7157 4.8941 23 1 13.5905 2.1298 5.6158 24 6 7.6224 1.9384 0.4122 25 6 6.9711 1.8324 -0.9709 26 7 5.7864 0.9679 -0.8858 27 6 3.5347 -0.7319 -0.0051 28 7 2.2892 -1.1327 0.0007 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9280 2.1194 -0.0007 33 1 5.4995 0.6376 1.8177 34 1 4.6236 2.1693 2.0646 35 1 7.6897 5.4328 3.6857 36 1 8.8238 6.0386 2.6308 37 1 8.9355 3.3618 3.9586 38 1 9.2565 2.3670 2.5180 39 1 10.8233 4.0939 1.6746 40 1 10.5023 5.0888 3.1153 41 1 14.1727 5.1155 2.8140 42 1 8.4321 2.6673 0.3806 43 1 8.0134 0.9650 0.7083 44 1 7.6834 1.4048 -1.6766 45 1 6.6737 2.8245 -1.3104 46 1 5.4058 0.7848 -1.8022 47 1 4.4055 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579959373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = 48.466585 kcal Electronic energy + Delta-G solvation = -27225.782578 eV Core-core repulsion = 23445.093978 eV Total energy + Delta-G solvation = -3780.688601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52113 -40.05861 -37.72795 -35.51050 -34.20544 -33.24319 -32.84970 -31.98297 -29.88349 -29.56030 -27.38566 -26.98374 -25.74351 -23.96621 -23.25777 -21.84637 -21.17233 -20.47370 -19.87282 -18.70491 -17.72405 -17.01424 -16.35250 -15.94783 -15.78053 -15.48086 -15.03814 -14.98221 -14.61854 -14.44820 -14.43287 -14.26188 -13.94532 -13.33106 -13.23753 -13.15171 -13.02653 -12.84573 -12.54057 -12.28710 -12.13192 -11.81178 -11.67021 -11.34406 -11.23181 -11.03289 -10.89317 -10.80150 -10.66938 -9.97173 -9.85854 -9.66904 -9.25934 -9.17482 -8.96075 -8.72578 -8.43275 -8.30527 -8.16545 -6.07879 -4.10733 1.60113 2.23980 2.52302 2.95531 3.12269 3.27957 3.34810 3.38458 3.89700 4.28243 4.40236 4.56463 4.67561 4.75015 4.79136 4.95599 4.97251 5.02051 5.07395 5.12860 5.16913 5.28346 5.29226 5.34503 5.51946 5.54753 5.56172 5.72142 5.77587 5.84611 5.89406 6.04678 6.30545 6.40812 6.51620 6.60011 6.66505 6.82441 6.88433 7.13066 7.42801 7.46197 7.52438 7.61064 7.67397 7.89230 7.91895 8.32111 8.46667 8.95180 9.54192 11.02959 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023182 B = 0.002447 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.518601 B =11441.870693 C =11842.406083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.064 3.936 4 C -0.235 4.235 5 C 0.159 3.841 6 H 0.046 0.954 7 C 0.128 3.872 8 N -0.617 5.617 9 C 0.528 3.472 10 O -0.541 6.541 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.107 3.893 25 C 0.044 3.956 26 N -0.680 5.680 27 C 0.077 3.923 28 N -0.303 5.303 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.345 0.655 36 H 0.354 0.646 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.345 0.655 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.040 -7.405 -10.516 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.084 4.084 4 C -0.247 4.247 5 C 0.047 3.953 6 H 0.064 0.936 7 C 0.005 3.995 8 N -0.351 5.351 9 C 0.317 3.683 10 O -0.417 6.417 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C -0.178 4.178 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.016 4.016 25 C -0.086 4.086 26 N -0.312 5.312 27 C -0.109 4.109 28 N -0.124 5.124 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.163 0.837 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.610 -8.369 -10.171 27.035 hybrid contribution 1.785 0.593 0.479 1.941 sum -21.825 -7.776 -9.692 25.114 Atomic orbital electron populations 1.21845 0.74250 1.04540 1.03285 1.48468 1.06628 1.03882 1.57055 1.22327 0.90886 0.93451 1.01694 1.19815 0.93215 0.94249 1.17433 1.19923 0.87627 0.93895 0.93831 0.93619 1.21624 0.85605 0.96883 0.95414 1.48144 1.16758 1.31715 1.38527 1.20896 0.89180 0.78947 0.79305 1.90613 1.46734 1.66219 1.38146 1.21505 0.91245 0.90375 1.00929 0.88609 1.58761 1.39680 1.13540 1.24350 1.22397 0.96719 0.99622 0.99066 1.19096 0.89074 0.95686 0.97320 1.21174 0.92845 1.11158 1.30875 0.92714 1.25009 0.98695 0.95075 0.95547 1.69946 1.18386 1.23155 1.41737 0.86587 0.81362 0.79744 0.80296 1.20593 1.21192 1.19898 1.21965 0.90635 1.01834 0.87215 1.22344 0.93105 0.95511 0.97638 1.60278 1.07276 1.47631 1.16028 1.23791 0.94844 0.94420 0.97865 1.77412 1.01852 1.08090 1.25090 0.90819 0.89290 0.89489 0.81032 0.91064 0.89138 0.84155 0.83114 0.92702 0.92358 0.96375 0.96449 0.92906 0.88488 0.90263 0.89157 0.94545 0.83683 0.79560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.47 59.85 0.69 1.17 16 2 N -0.38 -3.38 4.01 -68.16 -0.27 -3.66 16 3 C 0.06 0.54 11.40 -17.22 -0.20 0.35 16 4 C -0.23 -2.27 4.99 -105.06 -0.52 -2.79 16 5 C 0.16 1.61 3.00 -68.74 -0.21 1.40 16 6 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 7 C 0.13 1.62 5.87 -3.60 -0.02 1.60 16 8 N -0.62 -8.65 3.01 -172.46 -0.52 -9.17 16 9 C 0.53 9.07 6.96 -10.99 -0.08 9.00 16 10 O -0.54 -10.84 15.70 5.56 0.09 -10.75 16 11 C 0.07 1.28 2.36 -68.86 -0.16 1.12 16 12 H 0.10 1.55 6.51 -51.93 -0.34 1.21 16 13 N -0.83 -14.50 8.94 -5.66 -0.05 -14.55 16 14 C -0.14 -2.72 4.58 -26.73 -0.12 -2.85 16 15 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 16 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 C 0.11 1.27 5.74 -3.60 -0.02 1.24 16 25 C 0.04 0.41 6.70 -3.70 -0.02 0.39 16 26 N -0.68 -6.17 6.23 -107.68 -0.67 -6.84 16 27 C 0.08 0.79 11.66 -17.37 -0.20 0.59 16 28 N -0.30 -3.42 12.58 30.62 0.39 -3.03 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.28 7.05 -51.93 -0.37 0.91 16 35 H 0.35 6.13 8.58 -39.29 -0.34 5.80 16 36 H 0.35 6.13 7.55 -39.29 -0.30 5.84 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.11 7.27 -51.93 -0.38 0.73 16 39 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.10 1.20 5.33 -51.93 -0.28 0.92 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.34 2.69 8.76 -39.29 -0.34 2.34 16 47 H 0.19 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -33.49 380.14 -8.32 -41.81 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.31 Total: 10.67 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.41 Total: -1.33 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.39 Total: -62.35 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.49 -8.32 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579959373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.274 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds