Wall clock time and date at job start Fri Apr 10 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34956 * 126.03404 * 2 1 4 4 C 1.35313 * 107.74136 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.03461 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.49229 * 339.94419 * 5 4 3 7 7 C 1.53236 * 109.49282 * 99.99889 * 5 4 3 8 8 N 1.47086 * 108.52150 * 173.78953 * 7 5 4 9 9 C 1.34768 * 120.88221 * 128.54261 * 8 7 5 10 10 O 1.21279 * 120.00128 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00043 * 180.02562 * 9 8 7 12 12 H 1.08995 * 109.47258 * 39.99339 * 11 9 8 13 13 N 1.46900 * 109.47509 * 159.99582 * 11 9 8 14 14 C 1.52998 * 109.46744 * 279.99606 * 11 9 8 15 15 C 1.53001 * 109.47241 * 174.99951 * 14 11 9 16 16 C 1.50697 * 109.47423 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00073 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00330 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99931 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00236 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46817 * 90.00144 * 20 18 16 22 22 H 1.48494 * 109.47087 * 210.00101 * 20 18 16 23 23 H 1.48497 * 109.47180 * 330.00324 * 20 18 16 24 24 C 1.47082 * 118.23312 * 308.81145 * 8 7 5 25 25 C 1.53241 * 108.52213 * 51.18756 * 24 8 7 26 26 N 1.46897 * 109.48920 * 219.86065 * 5 4 3 27 27 C 1.39859 * 107.92515 * 0.25842 * 4 3 2 28 28 N 1.30839 * 108.20372 * 359.55808 * 27 4 3 29 29 H 1.09002 * 109.46983 * 90.00655 * 1 2 3 30 30 H 1.08999 * 109.46885 * 209.99948 * 1 2 3 31 31 H 1.08995 * 109.47598 * 330.00266 * 1 2 3 32 32 H 1.08001 * 126.12415 * 359.95381 * 3 2 1 33 33 H 1.09003 * 109.63185 * 54.07998 * 7 5 4 34 34 H 1.08999 * 109.79124 * 293.58867 * 7 5 4 35 35 H 1.00901 * 110.99545 * 59.99389 * 13 11 9 36 36 H 1.00900 * 111.00174 * 183.95035 * 13 11 9 37 37 H 1.08997 * 109.47551 * 294.99824 * 14 11 9 38 38 H 1.09002 * 109.47379 * 55.00231 * 14 11 9 39 39 H 1.09007 * 109.47155 * 300.00045 * 15 14 11 40 40 H 1.09006 * 109.47186 * 59.99888 * 15 14 11 41 41 H 0.97003 * 120.00446 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.62701 * 170.88914 * 24 8 7 43 43 H 1.08998 * 109.63121 * 291.47589 * 24 8 7 44 44 H 1.08993 * 109.49594 * 186.20872 * 25 24 8 45 45 H 1.08998 * 109.51499 * 66.13549 * 25 24 8 46 46 H 1.00906 * 110.99860 * 52.79128 * 26 5 4 47 47 H 1.08008 * 125.90484 * 179.73697 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5455 0.0013 6 1 4.5007 2.5417 -0.3510 7 6 5.3289 1.6397 1.4242 8 7 6.6017 2.3752 1.3769 9 6 6.8247 3.4250 2.1921 10 8 5.9698 3.7750 2.9779 11 6 8.1360 4.1648 2.1264 12 1 8.4450 4.2650 1.0860 13 7 7.9760 5.4988 2.7204 14 6 9.2004 3.3857 2.9016 15 6 10.5583 4.0700 2.7316 16 6 11.6065 3.3030 3.4957 17 1 11.3319 2.4159 4.0470 18 6 12.9165 3.7331 3.4900 19 7 13.2511 4.8130 2.8183 20 14 14.2158 2.7827 4.4377 21 1 14.8125 1.7470 3.5565 22 1 15.2770 3.7157 4.8941 23 1 13.5905 2.1298 5.6158 24 6 7.6224 1.9384 0.4122 25 6 6.9711 1.8324 -0.9709 26 7 5.7864 0.9679 -0.8858 27 6 3.5347 -0.7319 -0.0051 28 7 2.2892 -1.1327 0.0007 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9280 2.1194 -0.0007 33 1 5.4995 0.6376 1.8177 34 1 4.6236 2.1693 2.0646 35 1 7.6897 5.4328 3.6857 36 1 8.8238 6.0386 2.6308 37 1 8.9355 3.3618 3.9586 38 1 9.2565 2.3670 2.5180 39 1 10.8233 4.0939 1.6746 40 1 10.5023 5.0888 3.1153 41 1 14.1727 5.1155 2.8140 42 1 8.4321 2.6673 0.3806 43 1 8.0134 0.9650 0.7083 44 1 7.6834 1.4048 -1.6766 45 1 6.6737 2.8245 -1.3104 46 1 5.4058 0.7848 -1.8022 47 1 4.4055 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579959373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:37 Heat of formation + Delta-G solvation = 22.912448 kcal Electronic energy + Delta-G solvation = -27226.890689 eV Core-core repulsion = 23445.093978 eV Total energy + Delta-G solvation = -3781.796711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23058 -41.27660 -38.78716 -37.10433 -35.17380 -34.79715 -33.98513 -32.80229 -31.67701 -30.33163 -28.71373 -27.66201 -27.14051 -25.38595 -24.32280 -22.92900 -22.09796 -21.73365 -20.78017 -19.89623 -18.97027 -18.30542 -17.77504 -17.14351 -16.64600 -16.48135 -16.23908 -16.14096 -15.78800 -15.70727 -15.53109 -15.25309 -15.05890 -14.76708 -14.58701 -14.14172 -13.77418 -13.68920 -13.64616 -13.51675 -13.41096 -13.10075 -12.90149 -12.71194 -12.53749 -12.49976 -12.29336 -12.13726 -11.79050 -11.66984 -11.54590 -11.28274 -10.66884 -10.53914 -10.35832 -9.95896 -9.64685 -9.42713 -9.21627 -8.19672 -6.29453 0.93437 1.40770 1.41672 1.51875 1.57320 1.68784 1.75034 2.02345 2.41402 3.13901 3.14513 3.47715 3.71080 3.74547 3.98348 3.99986 4.05622 4.09316 4.22131 4.24029 4.28286 4.37029 4.40096 4.45112 4.54543 4.59625 4.67499 4.70764 4.80759 4.84892 4.89894 4.94509 5.05727 5.09565 5.15435 5.47058 5.48565 5.67065 5.70912 5.82265 5.99398 6.05469 6.13595 6.23235 6.34125 6.47478 6.51863 6.76085 6.85380 7.14585 7.39370 8.90899 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023182 B = 0.002447 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.518601 B =11441.870693 C =11842.406083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.069 3.931 4 C -0.249 4.249 5 C 0.174 3.826 6 H 0.044 0.956 7 C 0.128 3.872 8 N -0.609 5.609 9 C 0.525 3.475 10 O -0.574 6.574 11 C 0.082 3.918 12 H 0.110 0.890 13 N -0.830 5.830 14 C -0.120 4.120 15 C 0.033 3.967 16 C -0.543 4.543 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.925 5.925 20 Si 0.957 3.043 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.100 3.900 25 C 0.051 3.949 26 N -0.678 5.678 27 C 0.072 3.928 28 N -0.338 5.338 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.343 0.657 36 H 0.353 0.647 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.005 0.995 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.036 0.964 46 H 0.356 0.644 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 -8.192 -11.444 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.079 4.079 4 C -0.261 4.261 5 C 0.062 3.938 6 H 0.061 0.939 7 C 0.005 3.995 8 N -0.342 5.342 9 C 0.314 3.686 10 O -0.454 6.454 11 C -0.033 4.033 12 H 0.127 0.873 13 N -0.361 5.361 14 C -0.160 4.160 15 C -0.004 4.004 16 C -0.581 4.581 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.022 4.022 25 C -0.079 4.079 26 N -0.311 5.311 27 C -0.114 4.114 28 N -0.160 5.160 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.216 0.784 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.024 0.976 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.055 0.945 46 H 0.177 0.823 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.283 -9.198 -11.139 28.255 hybrid contribution 1.927 0.822 0.750 2.225 sum -22.357 -8.376 -10.389 26.037 Atomic orbital electron populations 1.22180 0.72108 1.05796 1.04629 1.48803 1.07912 1.03352 1.56075 1.22773 0.90601 0.94504 1.00067 1.19791 0.93518 0.93925 1.18912 1.19665 0.87884 0.94017 0.92197 0.93856 1.21702 0.84605 0.96057 0.97129 1.48201 1.17675 1.30517 1.37804 1.20793 0.88669 0.79643 0.79487 1.90596 1.47613 1.67463 1.39697 1.21415 0.90814 0.89883 1.01140 0.87253 1.58775 1.39495 1.13616 1.24233 1.22134 0.95278 0.99908 0.98686 1.18946 0.90700 0.94931 0.95850 1.21588 0.93975 1.11396 1.31116 0.92909 1.25831 1.00917 0.95993 0.96471 1.70052 1.18961 1.24505 1.42968 0.85567 0.78621 0.78524 0.79062 1.19613 1.20858 1.19456 1.22157 0.90296 1.01618 0.88160 1.22305 0.93509 0.95884 0.96204 1.60224 1.06982 1.47267 1.16628 1.23917 0.94894 0.94861 0.97724 1.77351 1.02512 1.09677 1.26432 0.89405 0.89294 0.87044 0.78419 0.91224 0.90789 0.84405 0.83195 0.94072 0.91612 0.97635 0.97986 0.92745 0.88971 0.90000 0.86913 0.94544 0.82347 0.79145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 11.47 127.77 1.47 2.16 16 2 N -0.38 -6.18 4.01 -369.56 -1.48 -7.67 16 3 C 0.07 1.05 11.40 83.54 0.95 2.00 16 4 C -0.25 -4.48 4.99 -20.15 -0.10 -4.58 16 5 C 0.17 3.27 3.00 44.25 0.13 3.40 16 6 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 7 C 0.13 3.16 5.87 86.35 0.51 3.66 16 8 N -0.61 -16.62 3.01 -817.93 -2.46 -19.08 16 9 C 0.53 17.92 6.96 87.66 0.61 18.53 16 10 O -0.57 -23.13 15.70 -3.03 -0.05 -23.18 16 11 C 0.08 2.82 2.36 44.17 0.10 2.92 16 12 H 0.11 3.45 6.51 -2.39 -0.02 3.44 16 13 N -0.83 -29.05 8.94 -171.81 -1.54 -30.58 16 14 C -0.12 -4.74 4.58 30.59 0.14 -4.60 16 15 C 0.03 1.60 4.74 29.85 0.14 1.74 16 16 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.92 -53.71 13.29 21.45 0.28 -53.43 16 20 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.10 2.23 5.74 86.35 0.50 2.73 16 25 C 0.05 0.84 6.70 86.38 0.58 1.42 16 26 N -0.68 -10.93 6.23 -494.60 -3.08 -14.01 16 27 C 0.07 1.41 11.66 85.23 0.99 2.41 16 28 N -0.34 -7.34 12.58 -57.02 -0.72 -8.06 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.09 7.05 -2.39 -0.02 2.07 16 35 H 0.34 12.34 8.58 -89.69 -0.77 11.57 16 36 H 0.35 12.37 7.55 -89.69 -0.68 11.69 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 2.47 7.27 -2.39 -0.02 2.45 16 39 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.00 0.10 6.87 -2.38 -0.02 0.08 16 41 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.09 2.16 5.33 -2.39 -0.01 2.15 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.36 4.70 8.76 -89.69 -0.79 3.92 16 47 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -71.51 380.14 -1.52 -73.03 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -1.23 Total: 34.45 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.72 Total: 3.20 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -8.99 Total: -132.83 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.51 -1.52 -73.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579959373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.946 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds