Wall clock time and date at job start Fri Apr 10 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.04035 * 2 1 4 4 C 1.35318 * 107.74698 * 180.15526 * 3 2 1 5 5 C 1.50698 * 126.03957 * 179.87602 * 4 3 2 6 6 H 1.08998 * 109.49323 * 19.76393 * 5 4 3 7 7 C 1.53237 * 109.49249 * 259.71001 * 5 4 3 8 8 N 1.47076 * 108.52069 * 186.18299 * 7 5 4 9 9 C 1.34772 * 120.88255 * 231.18199 * 8 7 5 10 10 O 1.21287 * 120.00037 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00478 * 179.97438 * 9 8 7 12 12 H 1.09008 * 109.46533 * 40.00543 * 11 9 8 13 13 N 1.46894 * 109.47347 * 160.00005 * 11 9 8 14 14 C 1.52996 * 109.47179 * 280.00667 * 11 9 8 15 15 C 1.52998 * 109.47089 * 174.99835 * 14 11 9 16 16 C 1.50696 * 109.47188 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.47083 * 118.23849 * 51.45809 * 8 7 5 25 25 C 1.53692 * 108.27496 * 308.48030 * 24 8 7 26 26 N 1.46900 * 109.51381 * 139.82808 * 5 4 3 27 27 C 1.39870 * 107.91895 * 359.60397 * 4 3 2 28 28 N 1.30836 * 108.20503 * 0.24574 * 27 4 3 29 29 H 1.09006 * 109.46444 * 270.26220 * 1 2 3 30 30 H 1.08996 * 109.47258 * 30.25606 * 1 2 3 31 31 H 1.08997 * 109.47023 * 150.26205 * 1 2 3 32 32 H 1.07995 * 126.12626 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.63115 * 66.46792 * 7 5 4 34 34 H 1.09003 * 109.62573 * 305.88858 * 7 5 4 35 35 H 1.00897 * 111.00233 * 60.00282 * 13 11 9 36 36 H 1.00903 * 111.00380 * 183.95779 * 13 11 9 37 37 H 1.08996 * 109.47176 * 54.99941 * 14 11 9 38 38 H 1.08997 * 109.47205 * 294.99453 * 14 11 9 39 39 H 1.09004 * 109.47223 * 59.99393 * 15 14 11 40 40 H 1.09010 * 109.47071 * 299.99745 * 15 14 11 41 41 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 42 42 H 1.08999 * 109.62809 * 68.24982 * 24 8 7 43 43 H 1.08999 * 109.62834 * 188.82741 * 24 8 7 44 44 H 1.08999 * 109.65084 * 294.08325 * 25 24 8 45 45 H 1.09001 * 109.44136 * 173.95862 * 25 24 8 46 46 H 1.00895 * 111.00039 * 58.93425 * 26 5 4 47 47 H 1.08001 * 125.89930 * 180.26886 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0035 5 6 4.7681 1.5452 -0.0074 6 1 4.5007 2.5430 0.3403 7 6 5.3298 1.6330 -1.4304 8 7 6.6023 2.3692 -1.3857 9 6 6.8276 3.4119 -2.2093 10 8 5.9749 3.7547 -3.0008 11 6 8.1385 4.1525 -2.1462 12 1 8.9519 3.4402 -2.0072 13 7 8.3440 4.8919 -3.3988 14 6 8.1138 5.1339 -0.9728 15 6 9.4863 5.7952 -0.8320 16 6 9.4622 6.7614 0.3242 17 1 8.5583 6.8912 0.9007 18 6 10.5940 7.4805 0.6454 19 7 11.6947 7.3229 -0.0570 20 14 10.5639 8.6787 2.0782 21 1 10.1508 10.0201 1.5930 22 1 9.5979 8.2032 3.1010 23 1 11.9189 8.7655 2.6794 24 6 7.6249 1.9334 -0.4225 25 6 6.9705 1.8375 0.9649 26 7 5.7862 0.9721 0.8831 27 6 3.5347 -0.7322 0.0035 28 7 2.2892 -1.1328 0.0056 29 1 -0.3632 0.0047 1.0278 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5097 32 1 1.9282 2.1193 -0.0004 33 1 4.6236 2.1611 -2.0710 34 1 5.5011 0.6291 -1.8190 35 1 7.6025 5.5591 -3.5507 36 1 9.2455 5.3450 -3.4076 37 1 7.8734 4.5971 -0.0552 38 1 7.3590 5.8989 -1.1547 39 1 9.7269 6.3320 -1.7497 40 1 10.2413 5.0302 -0.6501 41 1 11.7103 6.7004 -0.8007 42 1 8.0125 0.9579 -0.7161 43 1 8.4367 2.6603 -0.3964 44 1 6.6725 2.8313 1.2990 45 1 7.6824 1.4138 1.6733 46 1 6.0389 0.0401 0.5909 47 1 4.4054 -1.3711 0.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579959374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:43 Heat of formation + Delta-G solvation = 43.409797 kcal Electronic energy + Delta-G solvation = -27469.622140 eV Core-core repulsion = 23688.714260 eV Total energy + Delta-G solvation = -3780.907879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54949 -40.24348 -37.91035 -35.73641 -34.22191 -33.19592 -33.12090 -32.02499 -29.83765 -29.57452 -27.26925 -26.90231 -25.54416 -23.85797 -23.23990 -22.23269 -21.21213 -20.79986 -20.23315 -18.94568 -17.74896 -17.10287 -16.66745 -16.05581 -15.64843 -15.38957 -15.14153 -15.06767 -14.67215 -14.54968 -14.18525 -13.98754 -13.76750 -13.68335 -13.35181 -13.23894 -13.00642 -12.90729 -12.88621 -12.40718 -12.29393 -11.94454 -11.66327 -11.55762 -11.30167 -11.24279 -10.86016 -10.77064 -10.29561 -10.16848 -10.13611 -9.67961 -9.49098 -9.21766 -8.79313 -8.73976 -8.42491 -8.30945 -8.09779 -6.45139 -4.15870 1.61585 2.23467 2.48690 2.82541 2.96838 3.39005 3.41565 3.57514 3.97746 4.27418 4.46672 4.57508 4.58802 4.74047 4.76717 4.80516 4.93068 4.99171 5.02256 5.04833 5.07529 5.08182 5.30294 5.32744 5.40459 5.42672 5.55568 5.61586 5.62192 5.71962 5.86344 5.94425 6.12594 6.32270 6.35471 6.45771 6.67010 6.67712 6.80353 7.14308 7.18765 7.27389 7.30757 7.42726 7.50403 7.76622 8.08725 8.33266 8.35955 8.78420 9.56108 10.95177 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002725 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.536952 B =10270.976537 C =10881.846346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.066 3.934 4 C -0.223 4.223 5 C 0.157 3.843 6 H 0.089 0.911 7 C 0.087 3.913 8 N -0.617 5.617 9 C 0.530 3.470 10 O -0.538 6.538 11 C 0.073 3.927 12 H 0.095 0.905 13 N -0.830 5.830 14 C -0.130 4.130 15 C 0.012 3.988 16 C -0.603 4.603 17 H 0.048 0.952 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 1.070 2.930 21 H -0.288 1.288 22 H -0.288 1.288 23 H -0.283 1.283 24 C 0.063 3.937 25 C 0.044 3.956 26 N -0.674 5.674 27 C 0.064 3.936 28 N -0.299 5.299 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.346 0.654 36 H 0.352 0.648 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.269 0.731 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.339 0.661 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 -15.844 0.805 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.081 4.081 4 C -0.235 4.235 5 C 0.045 3.955 6 H 0.108 0.892 7 C -0.038 4.038 8 N -0.352 5.352 9 C 0.319 3.681 10 O -0.413 6.413 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.362 5.362 14 C -0.170 4.170 15 C -0.025 4.025 16 C -0.641 4.641 17 H 0.067 0.933 18 C -0.188 4.188 19 N -0.546 5.546 20 Si 0.898 3.102 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.209 1.209 24 C -0.062 4.062 25 C -0.086 4.086 26 N -0.303 5.303 27 C -0.123 4.123 28 N -0.121 5.121 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.191 0.809 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.157 0.843 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -18.083 -16.031 1.434 24.208 hybrid contribution 0.063 0.280 -1.033 1.072 sum -18.020 -15.751 0.401 23.937 Atomic orbital electron populations 1.21854 0.74173 1.04507 1.03384 1.48432 1.06631 1.03813 1.57061 1.22293 0.90712 0.93484 1.01566 1.19728 0.93576 0.93771 1.16449 1.20012 0.88367 0.97057 0.90063 0.89244 1.22286 0.86389 0.96638 0.98470 1.48118 1.16489 1.32371 1.38235 1.20840 0.89451 0.78961 0.78883 1.90624 1.46918 1.66163 1.37625 1.21516 0.94222 0.96774 0.91670 0.88693 1.58741 1.08513 1.35327 1.33617 1.22275 1.01669 0.97289 0.95770 1.19224 0.90630 0.95404 0.97243 1.22003 1.00004 1.26049 1.16093 0.93315 1.25849 0.92361 0.98859 1.01701 1.70776 1.28411 1.35957 1.19475 0.83522 0.75829 0.75653 0.75160 1.21442 1.21439 1.20912 1.22733 0.91944 1.01442 0.90093 1.22525 0.91845 0.99149 0.95061 1.60627 1.11235 1.05466 1.52941 1.23617 0.95078 0.94352 0.99232 1.77359 1.01653 1.08256 1.24792 0.90740 0.89427 0.89326 0.80869 0.88778 0.91764 0.84041 0.83314 0.92196 0.92549 0.97371 0.97295 0.92094 0.91359 0.88093 0.89785 0.88940 0.84300 0.80331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.47 59.85 0.69 1.20 16 2 N -0.38 -3.49 4.01 -68.16 -0.27 -3.77 16 3 C 0.07 0.60 11.40 -17.22 -0.20 0.41 16 4 C -0.22 -2.21 5.10 -105.05 -0.54 -2.75 16 5 C 0.16 1.62 3.00 -68.74 -0.21 1.42 16 6 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 7 C 0.09 1.02 5.84 -3.61 -0.02 1.00 16 8 N -0.62 -8.25 3.00 -172.18 -0.52 -8.76 16 9 C 0.53 8.92 6.96 -10.99 -0.08 8.85 16 10 O -0.54 -10.61 15.70 5.55 0.09 -10.52 16 11 C 0.07 1.24 2.35 -68.87 -0.16 1.08 16 12 H 0.10 1.52 6.85 -51.92 -0.36 1.17 16 13 N -0.83 -14.31 8.94 -5.66 -0.05 -14.36 16 14 C -0.13 -2.52 4.45 -26.73 -0.12 -2.64 16 15 C 0.01 0.28 4.05 -27.89 -0.11 0.17 16 16 C -0.60 -16.42 9.11 -34.44 -0.31 -16.73 16 17 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 18 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 19 N -0.91 -26.91 13.65 55.43 0.76 -26.15 16 20 Si 1.07 24.70 29.90 -169.99 -5.08 19.62 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.06 0.69 5.97 -3.36 -0.02 0.67 16 25 C 0.04 0.45 6.72 -3.46 -0.02 0.43 16 26 N -0.67 -6.48 6.40 -107.42 -0.69 -7.17 16 27 C 0.06 0.63 11.39 -17.37 -0.20 0.44 16 28 N -0.30 -3.37 12.58 30.62 0.39 -2.99 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.09 1.29 7.06 -51.93 -0.37 0.92 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 36 H 0.35 5.97 7.55 -39.29 -0.30 5.68 16 37 H 0.06 1.11 6.95 -51.93 -0.36 0.75 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.01 0.20 6.73 -51.93 -0.35 -0.15 16 40 H 0.01 0.22 8.01 -51.92 -0.42 -0.20 16 41 H 0.27 7.84 7.22 -40.82 -0.29 7.54 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 1.25 4.86 -51.93 -0.25 1.00 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.34 2.74 7.94 -39.29 -0.31 2.43 16 47 H 0.18 1.34 7.64 -52.49 -0.40 0.94 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -34.34 377.23 -8.26 -42.61 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.17 Total: 11.90 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.39 Total: -6.09 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -0.39 Total: -63.19 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.34 -8.26 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579959374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.016 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds