Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.04035 * 2 1 4 4 C 1.35318 * 107.74698 * 180.15526 * 3 2 1 5 5 C 1.50698 * 126.03957 * 179.87602 * 4 3 2 6 6 H 1.08998 * 109.49323 * 19.76393 * 5 4 3 7 7 C 1.53237 * 109.49249 * 259.71001 * 5 4 3 8 8 N 1.47076 * 108.52069 * 186.18299 * 7 5 4 9 9 C 1.34772 * 120.88255 * 231.18199 * 8 7 5 10 10 O 1.21287 * 120.00037 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00478 * 179.97438 * 9 8 7 12 12 H 1.09008 * 109.46533 * 40.00543 * 11 9 8 13 13 N 1.46894 * 109.47347 * 160.00005 * 11 9 8 14 14 C 1.52996 * 109.47179 * 280.00667 * 11 9 8 15 15 C 1.52998 * 109.47089 * 174.99835 * 14 11 9 16 16 C 1.50696 * 109.47188 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00210 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.47083 * 118.23849 * 51.45809 * 8 7 5 25 25 C 1.53692 * 108.27496 * 308.48030 * 24 8 7 26 26 N 1.46900 * 109.51381 * 139.82808 * 5 4 3 27 27 C 1.39870 * 107.91895 * 359.60397 * 4 3 2 28 28 N 1.30836 * 108.20503 * 0.24574 * 27 4 3 29 29 H 1.09006 * 109.46444 * 270.26220 * 1 2 3 30 30 H 1.08996 * 109.47258 * 30.25606 * 1 2 3 31 31 H 1.08997 * 109.47023 * 150.26205 * 1 2 3 32 32 H 1.07995 * 126.12626 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.63115 * 66.46792 * 7 5 4 34 34 H 1.09003 * 109.62573 * 305.88858 * 7 5 4 35 35 H 1.00897 * 111.00233 * 60.00282 * 13 11 9 36 36 H 1.00903 * 111.00380 * 183.95779 * 13 11 9 37 37 H 1.08996 * 109.47176 * 54.99941 * 14 11 9 38 38 H 1.08997 * 109.47205 * 294.99453 * 14 11 9 39 39 H 1.09004 * 109.47223 * 59.99393 * 15 14 11 40 40 H 1.09010 * 109.47071 * 299.99745 * 15 14 11 41 41 H 0.97000 * 119.99462 * 359.97438 * 19 18 16 42 42 H 1.08999 * 109.62809 * 68.24982 * 24 8 7 43 43 H 1.08999 * 109.62834 * 188.82741 * 24 8 7 44 44 H 1.08999 * 109.65084 * 294.08325 * 25 24 8 45 45 H 1.09001 * 109.44136 * 173.95862 * 25 24 8 46 46 H 1.00895 * 111.00039 * 58.93425 * 26 5 4 47 47 H 1.08001 * 125.89930 * 180.26886 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0035 5 6 4.7681 1.5452 -0.0074 6 1 4.5007 2.5430 0.3403 7 6 5.3298 1.6330 -1.4304 8 7 6.6023 2.3692 -1.3857 9 6 6.8276 3.4119 -2.2093 10 8 5.9749 3.7547 -3.0008 11 6 8.1385 4.1525 -2.1462 12 1 8.9519 3.4402 -2.0072 13 7 8.3440 4.8919 -3.3988 14 6 8.1138 5.1339 -0.9728 15 6 9.4863 5.7952 -0.8320 16 6 9.4622 6.7614 0.3242 17 1 8.5583 6.8912 0.9007 18 6 10.5940 7.4805 0.6454 19 7 11.6947 7.3229 -0.0570 20 14 10.5639 8.6787 2.0782 21 1 10.1508 10.0201 1.5930 22 1 9.5979 8.2032 3.1010 23 1 11.9189 8.7655 2.6794 24 6 7.6249 1.9334 -0.4225 25 6 6.9705 1.8375 0.9649 26 7 5.7862 0.9721 0.8831 27 6 3.5347 -0.7322 0.0035 28 7 2.2892 -1.1328 0.0056 29 1 -0.3632 0.0047 1.0278 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5097 32 1 1.9282 2.1193 -0.0004 33 1 4.6236 2.1611 -2.0710 34 1 5.5011 0.6291 -1.8190 35 1 7.6025 5.5591 -3.5507 36 1 9.2455 5.3450 -3.4076 37 1 7.8734 4.5971 -0.0552 38 1 7.3590 5.8989 -1.1547 39 1 9.7269 6.3320 -1.7497 40 1 10.2413 5.0302 -0.6501 41 1 11.7103 6.7004 -0.8007 42 1 8.0125 0.9579 -0.7161 43 1 8.4367 2.6603 -0.3964 44 1 6.6725 2.8313 1.2990 45 1 7.6824 1.4138 1.6733 46 1 6.0389 0.0401 0.5909 47 1 4.4054 -1.3711 0.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579959374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = 16.995737 kcal Electronic energy + Delta-G solvation = -27470.767539 eV Core-core repulsion = 23688.714260 eV Total energy + Delta-G solvation = -3782.053279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.27689 -41.41042 -38.98741 -37.33433 -35.25107 -34.97587 -33.95314 -32.84946 -31.55930 -30.38232 -28.55355 -27.56346 -26.92578 -25.33771 -24.35949 -23.27690 -22.47697 -21.85496 -20.98891 -20.13026 -19.20399 -18.50073 -17.81465 -17.23347 -16.56701 -16.33483 -16.14558 -15.92484 -15.76722 -15.64932 -15.61113 -15.44784 -15.19052 -14.69265 -14.63721 -14.38591 -14.09735 -13.77741 -13.69298 -13.57319 -13.42201 -13.19607 -12.97539 -12.69156 -12.59868 -12.44587 -12.19131 -12.05086 -11.93658 -11.90281 -11.52403 -10.94746 -10.69822 -10.53858 -10.37477 -10.26576 -9.78019 -9.53328 -9.00442 -8.66616 -6.38277 0.92665 1.46697 1.53608 1.60844 1.66047 1.70448 1.78803 1.94291 2.55989 3.16546 3.20227 3.37173 3.61287 3.67181 3.87934 3.95197 3.96782 4.02348 4.08791 4.12805 4.16239 4.24110 4.36206 4.43789 4.46369 4.48100 4.58235 4.66306 4.69379 4.72887 4.76096 4.87955 4.89312 5.05180 5.17177 5.30100 5.38094 5.40539 5.67583 5.92716 5.94109 5.97885 6.11028 6.18937 6.23887 6.34813 6.46700 6.60037 6.72756 7.05013 7.41415 8.74319 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002725 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.536952 B =10270.976537 C =10881.846346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.065 3.935 4 C -0.238 4.238 5 C 0.172 3.828 6 H 0.074 0.926 7 C 0.090 3.910 8 N -0.609 5.609 9 C 0.526 3.474 10 O -0.572 6.572 11 C 0.081 3.919 12 H 0.108 0.892 13 N -0.830 5.830 14 C -0.111 4.111 15 C 0.017 3.983 16 C -0.617 4.617 17 H 0.045 0.955 18 C -0.034 4.034 19 N -0.936 5.936 20 Si 1.114 2.886 21 H -0.277 1.277 22 H -0.270 1.270 23 H -0.282 1.282 24 C 0.060 3.940 25 C 0.051 3.949 26 N -0.671 5.671 27 C 0.061 3.939 28 N -0.333 5.333 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.195 0.805 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.344 0.656 36 H 0.352 0.648 37 H 0.068 0.932 38 H 0.041 0.959 39 H -0.003 1.003 40 H 0.001 0.999 41 H 0.259 0.741 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.351 0.649 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 -16.772 1.959 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.083 4.083 4 C -0.251 4.251 5 C 0.060 3.940 6 H 0.092 0.908 7 C -0.034 4.034 8 N -0.342 5.342 9 C 0.315 3.685 10 O -0.451 6.451 11 C -0.034 4.034 12 H 0.126 0.874 13 N -0.361 5.361 14 C -0.151 4.151 15 C -0.020 4.020 16 C -0.655 4.655 17 H 0.064 0.936 18 C -0.232 4.232 19 N -0.573 5.573 20 Si 0.936 3.064 21 H -0.203 1.203 22 H -0.194 1.194 23 H -0.208 1.208 24 C -0.064 4.064 25 C -0.080 4.080 26 N -0.301 5.301 27 C -0.125 4.125 28 N -0.155 5.155 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.212 0.788 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.019 0.981 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.131 0.869 46 H 0.171 0.829 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.966 -17.017 2.605 25.614 hybrid contribution 0.272 0.515 -1.394 1.511 sum -18.694 -16.503 1.210 24.965 Atomic orbital electron populations 1.22173 0.72138 1.05832 1.04547 1.48765 1.07887 1.03305 1.56237 1.22718 0.90724 0.94467 1.00379 1.19729 0.93671 0.93807 1.17880 1.19766 0.88793 0.96561 0.88887 0.90769 1.22385 0.85172 0.96572 0.99308 1.48167 1.17512 1.31195 1.37346 1.20728 0.88789 0.79754 0.79235 1.90608 1.47676 1.67477 1.39365 1.21424 0.95197 0.96399 0.90358 0.87433 1.58757 1.08415 1.35290 1.33664 1.22013 0.98513 0.97237 0.97361 1.19113 0.92705 0.94680 0.95545 1.22419 0.99757 1.26478 1.16861 0.93633 1.27254 0.92060 1.00352 1.03573 1.70898 1.29415 1.36821 1.20153 0.82958 0.76323 0.74234 0.72872 1.20282 1.19434 1.20770 1.22936 0.91070 1.02271 0.90126 1.22481 0.92284 0.98510 0.94699 1.60606 1.10826 1.05990 1.52631 1.23943 0.95408 0.94593 0.98550 1.77303 1.02420 1.09669 1.26116 0.89637 0.87112 0.89061 0.78763 0.90773 0.90297 0.84302 0.83333 0.91380 0.94065 0.98510 0.98084 0.93177 0.88681 0.89322 0.91777 0.86894 0.82881 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.47 127.77 1.47 2.25 16 2 N -0.38 -6.49 4.01 -369.57 -1.48 -7.97 16 3 C 0.06 1.08 11.40 83.54 0.95 2.04 16 4 C -0.24 -4.40 5.10 -20.14 -0.10 -4.50 16 5 C 0.17 3.33 3.00 44.25 0.13 3.47 16 6 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 7 C 0.09 2.01 5.84 86.35 0.50 2.52 16 8 N -0.61 -15.57 3.00 -817.06 -2.45 -18.02 16 9 C 0.53 17.50 6.96 87.66 0.61 18.11 16 10 O -0.57 -22.68 15.70 -3.05 -0.05 -22.72 16 11 C 0.08 2.73 2.35 44.17 0.10 2.83 16 12 H 0.11 3.35 6.85 -2.38 -0.02 3.33 16 13 N -0.83 -28.69 8.94 -171.81 -1.54 -30.22 16 14 C -0.11 -4.30 4.45 30.59 0.14 -4.16 16 15 C 0.02 0.79 4.05 29.85 0.12 0.92 16 16 C -0.62 -33.61 9.11 25.60 0.23 -33.38 16 17 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 18 C -0.03 -1.91 5.46 84.65 0.46 -1.45 16 19 N -0.94 -55.70 13.65 21.45 0.29 -55.41 16 20 Si 1.11 48.98 29.90 68.60 2.05 51.03 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.06 1.21 5.97 86.50 0.52 1.72 16 25 C 0.05 0.93 6.72 86.53 0.58 1.51 16 26 N -0.67 -11.46 6.40 -493.77 -3.16 -14.62 16 27 C 0.06 1.12 11.39 85.24 0.97 2.09 16 28 N -0.33 -7.12 12.58 -57.02 -0.72 -7.84 16 29 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.07 2.01 7.06 -2.39 -0.02 1.99 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.34 12.23 8.58 -89.70 -0.77 11.46 16 36 H 0.35 12.06 7.55 -89.69 -0.68 11.38 16 37 H 0.07 2.49 6.95 -2.39 -0.02 2.48 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.00 -0.16 6.73 -2.38 -0.02 -0.18 16 40 H 0.00 0.04 8.01 -2.38 -0.02 0.02 16 41 H 0.26 15.38 7.22 -92.71 -0.67 14.71 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 2.06 4.86 -2.39 -0.01 2.04 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.35 4.68 7.94 -89.70 -0.71 3.96 16 47 H 0.20 2.56 7.64 -2.91 -0.02 2.53 16 Total: -1.00 -73.72 377.23 -1.41 -75.14 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -1.05 Total: 36.67 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 6.69 Total: -6.04 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -9.05 Total: -134.07 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.03 kcal Total: -73.72 -1.41 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579959374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.132 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds