Wall clock time and date at job start Fri Apr 10 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.52092 * 2 1 4 4 C 1.53070 * 109.62779 * 239.97600 * 2 1 3 5 5 C 1.53035 * 109.66439 * 178.82945 * 4 2 1 6 6 C 1.53198 * 109.31092 * 61.29672 * 5 4 2 7 7 N 1.46919 * 108.77485 * 305.36534 * 6 5 4 8 8 C 1.34776 * 120.63504 * 233.62691 * 7 6 5 9 9 O 1.21280 * 120.00474 * 186.33095 * 8 7 6 10 10 C 1.50701 * 119.99497 * 6.33596 * 8 7 6 11 11 N 1.46508 * 109.46913 * 179.97438 * 10 8 7 12 12 C 1.34424 * 126.82199 * 125.00136 * 11 10 8 13 13 N 1.30831 * 108.07719 * 179.97438 * 12 11 10 14 14 C 1.33241 * 109.82591 * 359.97438 * 13 12 11 15 15 N 1.30713 * 108.95131 * 359.75627 * 14 13 12 16 16 C 1.46931 * 118.73893 * 53.61542 * 7 6 5 17 17 H 1.08988 * 109.59074 * 66.31148 * 16 7 6 18 18 C 1.53003 * 109.58678 * 186.60111 * 16 7 6 19 19 C 1.52997 * 109.47297 * 66.19247 * 18 16 7 20 20 N 1.46496 * 109.47330 * 175.73510 * 19 18 16 21 21 C 1.36939 * 120.00194 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99800 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99812 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99619 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00238 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47023 * 90.00488 * 25 23 21 27 27 H 1.48497 * 109.47351 * 330.00541 * 25 23 21 28 28 H 1.48499 * 109.47229 * 210.00438 * 25 23 21 29 29 H 1.08995 * 109.47140 * 299.92168 * 1 2 3 30 30 H 1.09005 * 109.47109 * 59.92084 * 1 2 3 31 31 H 1.09000 * 109.46962 * 179.91876 * 1 2 3 32 32 H 1.09006 * 109.45520 * 58.73427 * 4 2 1 33 33 H 1.09000 * 109.33442 * 298.85030 * 4 2 1 34 34 H 1.09008 * 109.49796 * 301.35010 * 5 4 2 35 35 H 1.08990 * 109.50156 * 181.25051 * 5 4 2 36 36 H 1.09003 * 109.58622 * 185.57928 * 6 5 4 37 37 H 1.08994 * 109.58316 * 65.15712 * 6 5 4 38 38 H 1.08998 * 109.47436 * 299.99589 * 10 8 7 39 39 H 1.09003 * 109.47564 * 60.00023 * 10 8 7 40 40 H 1.08001 * 125.96400 * 359.97438 * 12 11 10 41 41 H 1.08003 * 125.52253 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47227 * 306.19054 * 18 16 7 43 43 H 1.08996 * 109.47061 * 186.19175 * 18 16 7 44 44 H 1.09005 * 109.47156 * 55.73331 * 19 18 16 45 45 H 1.09004 * 109.47551 * 295.73601 * 19 18 16 46 46 H 0.97007 * 119.99809 * 359.97438 * 20 19 18 47 47 H 0.97001 * 120.00184 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0442 -0.7214 -1.2483 5 6 3.5742 -0.6965 -1.2640 6 6 4.1056 -1.4300 -0.0284 7 7 3.5045 -0.8320 1.1714 8 6 4.2806 -0.3907 2.1811 9 8 3.7725 -0.0052 3.2127 10 6 5.7797 -0.3761 2.0282 11 7 6.3906 0.1437 3.2542 12 6 7.3280 -0.4594 4.0056 13 7 7.6100 0.3277 5.0119 14 6 6.8765 1.4375 4.9368 15 7 6.1180 1.3740 3.8742 16 6 2.0413 -0.7238 1.2496 17 1 1.6033 -1.7206 1.2993 18 6 1.6517 0.0705 2.4979 19 6 2.1299 1.5165 2.3522 20 7 1.6690 2.3014 3.5001 21 6 1.9782 3.6325 3.5880 22 1 2.5623 4.1036 2.8112 23 6 1.5418 4.3760 4.6759 24 7 1.8395 5.6553 4.7607 25 14 0.5322 3.5610 6.0197 26 1 1.4404 3.0259 7.0656 27 1 -0.2614 2.4492 5.4373 28 1 -0.3851 4.5600 6.6245 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6637 -0.2215 -2.1391 33 1 1.6979 -1.7549 -1.2362 34 1 3.9214 0.3368 -1.2509 35 1 3.9370 -1.1912 -2.1648 36 1 5.1900 -1.3301 0.0176 37 1 3.8358 -2.4845 -0.0855 38 1 6.1362 -1.3899 1.8458 39 1 6.0531 0.2619 1.1877 40 1 7.7711 -1.4252 3.8123 41 1 6.9067 2.2582 5.6382 42 1 2.1170 -0.3795 3.3749 43 1 0.5680 0.0562 2.6141 44 1 1.7246 1.9425 1.4344 45 1 3.2191 1.5368 2.3121 46 1 1.1440 1.8783 4.1975 47 1 1.5342 6.1750 5.5207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691308518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:01 Heat of formation + Delta-G solvation = 112.502262 kcal Electronic energy + Delta-G solvation = -29095.259251 eV Core-core repulsion = 25317.347446 eV Total energy + Delta-G solvation = -3777.911805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92461 -40.86461 -37.79390 -35.52042 -33.99509 -33.66342 -32.73583 -31.02415 -30.97430 -29.27641 -27.80199 -26.55776 -25.15935 -23.34027 -22.24036 -21.82015 -21.70405 -21.36617 -20.10873 -18.93227 -17.56608 -17.18875 -17.03411 -16.01909 -15.69681 -15.31096 -15.04582 -14.84085 -14.60948 -14.21744 -14.12644 -13.78480 -13.64997 -13.51750 -13.30801 -12.97274 -12.77902 -12.45551 -12.33814 -12.10023 -11.86397 -11.60040 -11.46679 -11.34409 -11.08650 -10.92396 -10.70695 -10.54483 -10.36411 -10.17631 -9.86167 -9.82522 -9.77542 -9.54008 -9.38732 -8.75847 -8.69190 -8.40499 -6.89441 -5.55500 -2.85927 1.77373 2.25835 2.54669 2.92036 3.19848 3.52330 3.57293 3.58987 4.14793 4.34188 4.38212 4.46645 4.62900 4.65661 4.79390 4.80231 4.81690 5.00410 5.05287 5.09622 5.27752 5.35064 5.38242 5.48836 5.53097 5.57452 5.66449 5.73272 5.78186 5.89845 5.91684 6.05009 6.14210 6.24846 6.28914 6.37211 6.37999 6.48508 6.63485 6.66193 6.85760 7.07299 7.20562 7.34939 8.22085 8.23792 8.28205 8.64613 9.46043 10.19852 10.41856 11.64131 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.006442 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.230261 B = 4345.374319 C = 7038.840051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.108 3.892 7 N -0.610 5.610 8 C 0.489 3.511 9 O -0.459 6.459 10 C 0.112 3.888 11 N -0.373 5.373 12 C 0.242 3.758 13 N -0.545 5.545 14 C 0.190 3.810 15 N -0.262 5.262 16 C 0.165 3.835 17 H 0.068 0.932 18 C -0.146 4.146 19 C 0.169 3.831 20 N -0.749 5.749 21 C -0.221 4.221 22 H 0.085 0.915 23 C -0.002 4.002 24 N -0.942 5.942 25 Si 0.885 3.115 26 H -0.287 1.287 27 H -0.280 1.280 28 H -0.294 1.294 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.214 0.786 41 H 0.216 0.784 42 H 0.107 0.893 43 H 0.054 0.946 44 H 0.009 0.991 45 H 0.039 0.961 46 H 0.357 0.643 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -21.246 -14.379 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.015 4.015 7 N -0.347 5.347 8 C 0.274 3.726 9 O -0.330 6.330 10 C -0.015 4.015 11 N -0.165 5.165 12 C -0.055 4.055 13 N -0.273 5.273 14 C -0.113 4.113 15 N -0.087 5.087 16 C 0.062 3.938 17 H 0.085 0.915 18 C -0.183 4.183 19 C 0.042 3.958 20 N -0.393 5.393 21 C -0.352 4.352 22 H 0.103 0.897 23 C -0.196 4.196 24 N -0.592 5.592 25 Si 0.716 3.284 26 H -0.214 1.214 27 H -0.207 1.207 28 H -0.221 1.221 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.230 0.770 41 H 0.232 0.768 42 H 0.125 0.875 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.057 0.943 46 H 0.189 0.811 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.244 -20.330 -13.862 25.650 hybrid contribution -0.728 -0.698 0.701 1.228 sum 6.515 -21.028 -13.162 25.649 Atomic orbital electron populations 1.21781 0.94314 1.01448 1.02687 1.21693 0.96328 1.01227 0.93777 0.89354 1.21587 0.94750 1.00638 0.98140 1.21934 0.96731 1.01634 0.97237 1.21737 0.97706 0.97278 0.84826 1.47997 1.06869 1.61977 1.17857 1.20310 0.88284 0.79306 0.84741 1.90914 1.72083 1.42252 1.27791 1.21619 0.93082 1.01224 0.85561 1.50096 1.30610 1.14669 1.21160 1.25937 0.91068 0.99807 0.88653 1.70499 1.28899 1.04793 1.23068 1.26089 0.91805 0.97114 0.96254 1.78526 1.21072 0.98355 1.10730 1.21262 0.77878 0.98566 0.96077 0.91454 1.22524 0.99979 0.97903 0.97882 1.20898 0.97552 0.87776 0.89592 1.42587 1.64809 1.07998 1.23879 1.19031 1.26827 0.83760 1.05534 0.89746 1.24597 1.01308 0.95566 0.98176 1.69708 1.51617 1.06161 1.31684 0.86523 0.80394 0.78272 0.83205 1.21358 1.20653 1.22122 0.91514 0.92542 0.93043 0.91646 0.92065 0.91118 0.90772 0.90255 0.91131 0.86023 0.86869 0.76982 0.76765 0.87517 0.92776 0.97334 0.94346 0.81112 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.98 37.16 0.33 -1.28 16 2 C -0.11 -1.26 1.99 -90.48 -0.18 -1.44 16 3 H 0.09 1.26 5.93 -51.93 -0.31 0.95 16 4 C -0.11 -0.92 5.17 -26.68 -0.14 -1.06 16 5 C -0.14 -0.91 6.09 -26.61 -0.16 -1.08 16 6 C 0.11 0.68 6.35 -3.71 -0.02 0.65 16 7 N -0.61 -6.57 2.94 -165.22 -0.49 -7.05 16 8 C 0.49 6.58 6.34 -10.99 -0.07 6.51 16 9 O -0.46 -8.67 9.63 5.56 0.05 -8.62 16 10 C 0.11 1.08 5.39 -5.19 -0.03 1.05 16 11 N -0.37 -5.11 3.40 -63.81 -0.22 -5.32 16 12 C 0.24 2.85 12.63 -90.66 -1.14 1.71 16 13 N -0.55 -8.29 11.19 -15.83 -0.18 -8.47 16 14 C 0.19 3.23 13.03 -91.81 -1.20 2.03 16 15 N -0.26 -4.90 11.84 29.29 0.35 -4.56 16 16 C 0.17 2.05 2.66 -67.59 -0.18 1.87 16 17 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 18 C -0.15 -2.51 4.19 -26.73 -0.11 -2.62 16 19 C 0.17 3.65 4.95 -4.05 -0.02 3.63 16 20 N -0.75 -19.99 5.41 -59.91 -0.32 -20.31 16 21 C -0.22 -6.85 10.47 -15.06 -0.16 -7.01 16 22 H 0.08 2.81 8.06 -52.48 -0.42 2.39 16 23 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 24 N -0.94 -31.54 13.97 55.49 0.78 -30.77 16 25 Si 0.88 24.31 27.74 -169.99 -4.71 19.59 16 26 H -0.29 -7.94 7.11 56.52 0.40 -7.53 16 27 H -0.28 -7.30 6.52 56.52 0.37 -6.93 16 28 H -0.29 -8.06 7.11 56.52 0.40 -7.66 16 29 H 0.07 0.90 6.76 -51.93 -0.35 0.55 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.30 5.93 -51.93 -0.31 -0.01 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.12 0.54 7.63 -51.93 -0.40 0.15 16 39 H 0.11 0.94 7.95 -51.93 -0.41 0.52 16 40 H 0.21 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.22 3.20 8.06 -52.48 -0.42 2.77 16 42 H 0.11 2.07 5.55 -53.88 -0.30 1.77 16 43 H 0.05 0.93 6.94 -51.93 -0.36 0.57 16 44 H 0.01 0.20 5.96 -51.93 -0.31 -0.11 16 45 H 0.04 0.90 5.08 -51.93 -0.26 0.64 16 46 H 0.36 9.52 5.53 -40.82 -0.23 9.29 16 47 H 0.26 8.15 8.31 -40.82 -0.34 7.81 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -41.06 361.44 -9.52 -50.58 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.05 Total: 6.67 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -3.17 Total: 2.80 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -0.08 Total: -76.48 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.05 Total: -8.62 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.71 Total: 19.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -41.06 -9.52 -50.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691308518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.086 kcal (2) G-P(sol) polarization free energy of solvation -41.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds