Wall clock time and date at job start Fri Apr 10 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.52092 * 2 1 4 4 C 1.53070 * 109.62779 * 239.97600 * 2 1 3 5 5 C 1.53035 * 109.66439 * 178.82945 * 4 2 1 6 6 C 1.53198 * 109.31092 * 61.29672 * 5 4 2 7 7 N 1.46919 * 108.77485 * 305.36534 * 6 5 4 8 8 C 1.34776 * 120.63504 * 233.62691 * 7 6 5 9 9 O 1.21280 * 120.00474 * 186.33095 * 8 7 6 10 10 C 1.50701 * 119.99497 * 6.33596 * 8 7 6 11 11 N 1.46508 * 109.46913 * 179.97438 * 10 8 7 12 12 C 1.34424 * 126.82199 * 125.00136 * 11 10 8 13 13 N 1.30831 * 108.07719 * 179.97438 * 12 11 10 14 14 C 1.33241 * 109.82591 * 359.97438 * 13 12 11 15 15 N 1.30713 * 108.95131 * 359.75627 * 14 13 12 16 16 C 1.46931 * 118.73893 * 53.61542 * 7 6 5 17 17 H 1.08988 * 109.59074 * 66.31148 * 16 7 6 18 18 C 1.53003 * 109.58678 * 186.60111 * 16 7 6 19 19 C 1.52997 * 109.47297 * 66.19247 * 18 16 7 20 20 N 1.46496 * 109.47330 * 175.73510 * 19 18 16 21 21 C 1.36939 * 120.00194 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99800 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99812 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99619 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00238 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47023 * 90.00488 * 25 23 21 27 27 H 1.48497 * 109.47351 * 330.00541 * 25 23 21 28 28 H 1.48499 * 109.47229 * 210.00438 * 25 23 21 29 29 H 1.08995 * 109.47140 * 299.92168 * 1 2 3 30 30 H 1.09005 * 109.47109 * 59.92084 * 1 2 3 31 31 H 1.09000 * 109.46962 * 179.91876 * 1 2 3 32 32 H 1.09006 * 109.45520 * 58.73427 * 4 2 1 33 33 H 1.09000 * 109.33442 * 298.85030 * 4 2 1 34 34 H 1.09008 * 109.49796 * 301.35010 * 5 4 2 35 35 H 1.08990 * 109.50156 * 181.25051 * 5 4 2 36 36 H 1.09003 * 109.58622 * 185.57928 * 6 5 4 37 37 H 1.08994 * 109.58316 * 65.15712 * 6 5 4 38 38 H 1.08998 * 109.47436 * 299.99589 * 10 8 7 39 39 H 1.09003 * 109.47564 * 60.00023 * 10 8 7 40 40 H 1.08001 * 125.96400 * 359.97438 * 12 11 10 41 41 H 1.08003 * 125.52253 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47227 * 306.19054 * 18 16 7 43 43 H 1.08996 * 109.47061 * 186.19175 * 18 16 7 44 44 H 1.09005 * 109.47156 * 55.73331 * 19 18 16 45 45 H 1.09004 * 109.47551 * 295.73601 * 19 18 16 46 46 H 0.97007 * 119.99809 * 359.97438 * 20 19 18 47 47 H 0.97001 * 120.00184 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0442 -0.7214 -1.2483 5 6 3.5742 -0.6965 -1.2640 6 6 4.1056 -1.4300 -0.0284 7 7 3.5045 -0.8320 1.1714 8 6 4.2806 -0.3907 2.1811 9 8 3.7725 -0.0052 3.2127 10 6 5.7797 -0.3761 2.0282 11 7 6.3906 0.1437 3.2542 12 6 7.3280 -0.4594 4.0056 13 7 7.6100 0.3277 5.0119 14 6 6.8765 1.4375 4.9368 15 7 6.1180 1.3740 3.8742 16 6 2.0413 -0.7238 1.2496 17 1 1.6033 -1.7206 1.2993 18 6 1.6517 0.0705 2.4979 19 6 2.1299 1.5165 2.3522 20 7 1.6690 2.3014 3.5001 21 6 1.9782 3.6325 3.5880 22 1 2.5623 4.1036 2.8112 23 6 1.5418 4.3760 4.6759 24 7 1.8395 5.6553 4.7607 25 14 0.5322 3.5610 6.0197 26 1 1.4404 3.0259 7.0656 27 1 -0.2614 2.4492 5.4373 28 1 -0.3851 4.5600 6.6245 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6637 -0.2215 -2.1391 33 1 1.6979 -1.7549 -1.2362 34 1 3.9214 0.3368 -1.2509 35 1 3.9370 -1.1912 -2.1648 36 1 5.1900 -1.3301 0.0176 37 1 3.8358 -2.4845 -0.0855 38 1 6.1362 -1.3899 1.8458 39 1 6.0531 0.2619 1.1877 40 1 7.7711 -1.4252 3.8123 41 1 6.9067 2.2582 5.6382 42 1 2.1170 -0.3795 3.3749 43 1 0.5680 0.0562 2.6141 44 1 1.7246 1.9425 1.4344 45 1 3.2191 1.5368 2.3121 46 1 1.1440 1.8783 4.1975 47 1 1.5342 6.1750 5.5207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691308518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:00 Heat of formation + Delta-G solvation = 83.158209 kcal Electronic energy + Delta-G solvation = -29096.531704 eV Core-core repulsion = 25317.347446 eV Total energy + Delta-G solvation = -3779.184259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.97710 -41.85245 -38.72478 -37.09585 -35.41956 -34.60183 -34.03709 -32.92975 -32.10968 -30.49540 -29.03018 -27.38172 -26.47314 -24.75505 -23.57708 -23.21339 -22.84259 -22.27209 -21.16265 -20.08604 -19.46238 -18.31120 -18.01591 -16.98382 -16.84469 -16.58683 -16.47278 -15.93616 -15.80797 -15.42904 -15.17001 -15.03720 -14.86831 -14.77278 -14.43758 -14.33996 -14.04376 -13.63819 -13.48391 -13.30916 -13.05410 -12.99131 -12.62656 -12.53385 -12.45238 -12.27824 -12.15390 -11.89889 -11.78829 -11.60962 -11.36746 -11.20174 -10.95899 -10.93112 -10.80199 -10.71167 -9.81159 -9.50184 -9.12694 -8.04309 -5.33245 0.76735 1.27822 1.33856 1.39156 1.40033 1.61479 2.02612 2.11097 2.44552 3.26924 3.34439 3.53551 3.63152 3.69744 3.82116 3.85585 3.98112 4.08470 4.11419 4.14758 4.26613 4.34315 4.45398 4.52712 4.54987 4.61795 4.66887 4.82069 4.87123 4.89545 4.93474 5.02396 5.13203 5.26110 5.29442 5.30739 5.35422 5.42795 5.46075 5.48765 5.58953 5.71677 5.76768 5.99232 6.20968 6.48913 7.07390 7.17267 7.30675 7.87478 8.06308 9.18524 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.006442 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.230261 B = 4345.374319 C = 7038.840051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.048 0.952 4 C -0.108 4.108 5 C -0.136 4.136 6 C 0.101 3.899 7 N -0.605 5.605 8 C 0.478 3.522 9 O -0.526 6.526 10 C 0.109 3.891 11 N -0.374 5.374 12 C 0.262 3.738 13 N -0.574 5.574 14 C 0.176 3.824 15 N -0.329 5.329 16 C 0.170 3.830 17 H 0.094 0.906 18 C -0.131 4.131 19 C 0.177 3.823 20 N -0.752 5.752 21 C -0.217 4.217 22 H 0.044 0.956 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.958 3.042 26 H -0.287 1.287 27 H -0.258 1.258 28 H -0.287 1.287 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.189 0.811 39 H 0.128 0.872 40 H 0.276 0.724 41 H 0.214 0.786 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.000 1.000 45 H 0.025 0.975 46 H 0.358 0.642 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 -26.024 -16.370 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.067 0.933 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.020 4.020 7 N -0.340 5.340 8 C 0.265 3.735 9 O -0.402 6.402 10 C -0.016 4.016 11 N -0.166 5.166 12 C -0.033 4.033 13 N -0.302 5.302 14 C -0.127 4.127 15 N -0.156 5.156 16 C 0.067 3.933 17 H 0.112 0.888 18 C -0.169 4.169 19 C 0.052 3.948 20 N -0.396 5.396 21 C -0.348 4.348 22 H 0.062 0.938 23 C -0.257 4.257 24 N -0.638 5.638 25 Si 0.785 3.215 26 H -0.214 1.214 27 H -0.183 1.183 28 H -0.214 1.214 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.206 0.794 39 H 0.146 0.854 40 H 0.291 0.709 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.018 0.982 45 H 0.042 0.958 46 H 0.190 0.810 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.793 -25.171 -15.951 30.802 hybrid contribution -0.832 0.757 1.158 1.614 sum 6.961 -24.415 -14.793 29.383 Atomic orbital electron populations 1.21767 0.94319 1.02595 1.01393 1.21619 0.96372 0.99400 0.95366 0.93330 1.21565 0.95922 1.01211 0.95889 1.21953 0.95527 1.00951 0.98958 1.22175 0.99447 0.98225 0.82178 1.48125 1.06011 1.61101 1.18764 1.21048 0.90097 0.78074 0.84241 1.90893 1.73543 1.45353 1.30459 1.22093 0.90242 1.04885 0.84347 1.50210 1.30993 1.13304 1.22104 1.27076 0.89169 1.00548 0.86506 1.70474 1.29691 1.04893 1.25147 1.26192 0.92150 0.98085 0.96264 1.78391 1.22984 1.01968 1.12213 1.21145 0.79578 0.98833 0.93793 0.88787 1.22293 0.99206 0.95174 1.00198 1.20966 0.96525 0.90090 0.87266 1.42655 1.64811 1.06782 1.25372 1.18945 1.25742 0.85696 1.04464 0.93762 1.25417 1.03151 0.96229 1.00891 1.69886 1.53284 1.07884 1.32728 0.85364 0.78737 0.77860 0.79491 1.21432 1.18296 1.21359 0.94664 0.92013 0.90589 0.91459 0.89829 0.93309 0.87531 0.87010 0.88183 0.79440 0.85396 0.70861 0.76943 0.89206 0.93253 0.98192 0.95763 0.81008 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.98 71.98 0.65 -2.41 16 2 C -0.11 -2.34 1.99 -10.70 -0.02 -2.36 16 3 H 0.05 1.44 5.93 -2.38 -0.01 1.42 16 4 C -0.11 -1.38 5.17 30.63 0.16 -1.22 16 5 C -0.14 -1.26 6.09 30.67 0.19 -1.07 16 6 C 0.10 0.74 6.35 86.37 0.55 1.29 16 7 N -0.61 -11.38 2.94 -795.03 -2.34 -13.72 16 8 C 0.48 12.16 6.34 87.66 0.56 12.71 16 9 O -0.53 -20.22 9.63 -3.03 -0.03 -20.25 16 10 C 0.11 1.74 5.39 85.63 0.46 2.20 16 11 N -0.37 -9.69 3.40 -355.79 -1.21 -10.90 16 12 C 0.26 5.46 12.63 180.36 2.28 7.74 16 13 N -0.57 -17.20 11.19 -204.00 -2.28 -19.49 16 14 C 0.18 6.29 13.03 180.76 2.36 8.65 16 15 N -0.33 -12.85 11.84 -61.24 -0.72 -13.57 16 16 C 0.17 3.93 2.66 44.98 0.12 4.05 16 17 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 18 C -0.13 -4.60 4.19 30.59 0.13 -4.47 16 19 C 0.18 8.08 4.95 86.38 0.43 8.50 16 20 N -0.75 -41.95 5.41 -343.45 -1.86 -43.80 16 21 C -0.22 -14.20 10.47 84.03 0.88 -13.32 16 22 H 0.04 3.18 8.06 -2.91 -0.02 3.16 16 23 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 24 N -0.99 -68.79 13.97 21.65 0.30 -68.49 16 25 Si 0.96 51.77 27.74 68.60 1.90 53.67 16 26 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 27 H -0.26 -12.87 6.52 99.48 0.65 -12.22 16 28 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 29 H 0.03 0.96 6.76 -2.39 -0.02 0.94 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.11 0.13 5.93 -2.39 -0.01 0.11 16 37 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.19 0.40 7.63 -2.39 -0.02 0.39 16 39 H 0.13 1.70 7.95 -2.39 -0.02 1.68 16 40 H 0.28 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.21 7.05 8.06 -2.91 -0.02 7.03 16 42 H 0.09 3.56 5.55 -33.20 -0.18 3.38 16 43 H 0.05 1.72 6.94 -2.39 -0.02 1.70 16 44 H 0.00 0.02 5.96 -2.38 -0.01 0.01 16 45 H 0.02 1.21 5.08 -2.38 -0.01 1.20 16 46 H 0.36 19.53 5.53 -92.70 -0.51 19.02 16 47 H 0.26 16.94 8.31 -92.71 -0.77 16.17 16 Total: -1.00 -99.92 361.44 3.20 -96.72 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.24 Total: 23.43 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 9.19 Total: 16.39 kcal Atomic # 7 Polarization: -161.85 SS G_CDS: -8.11 Total: -169.96 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.03 Total: -20.25 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.90 Total: 53.67 kcal Total: -99.92 3.20 -96.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691308518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.877 kcal (2) G-P(sol) polarization free energy of solvation -99.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds