Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52439 * 2 1 4 4 C 1.53043 * 109.49765 * 120.08144 * 2 1 3 5 5 C 1.53042 * 109.53845 * 58.58103 * 4 2 1 6 6 C 1.53193 * 109.31171 * 61.36869 * 5 4 2 7 7 N 1.46936 * 108.77277 * 305.36446 * 6 5 4 8 8 C 1.34779 * 120.62756 * 233.58598 * 7 6 5 9 9 O 1.21279 * 119.99792 * 185.38782 * 8 7 6 10 10 C 1.50703 * 119.99860 * 5.38806 * 8 7 6 11 11 N 1.46506 * 109.46867 * 179.97438 * 10 8 7 12 12 C 1.34429 * 126.82220 * 125.00066 * 11 10 8 13 13 N 1.30830 * 108.08040 * 179.97438 * 12 11 10 14 14 C 1.33243 * 109.82716 * 0.02562 * 13 12 11 15 15 N 1.30712 * 108.94411 * 359.75063 * 14 13 12 16 16 C 1.46923 * 118.74040 * 53.60767 * 7 6 5 17 17 H 1.09004 * 109.58532 * 66.31762 * 16 7 6 18 18 C 1.53000 * 109.58573 * 186.60122 * 16 7 6 19 19 C 1.53005 * 109.46935 * 178.17591 * 18 16 7 20 20 N 1.46497 * 109.46919 * 174.92644 * 19 18 16 21 21 C 1.36938 * 119.99909 * 179.97438 * 20 19 18 22 22 H 1.07994 * 119.99974 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99838 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00239 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99759 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47496 * 270.00034 * 25 23 21 27 27 H 1.48501 * 109.47451 * 29.99914 * 25 23 21 28 28 H 1.48504 * 109.47212 * 150.00134 * 25 23 21 29 29 H 1.08994 * 109.47353 * 180.08292 * 1 2 3 30 30 H 1.09001 * 109.47299 * 300.08600 * 1 2 3 31 31 H 1.09000 * 109.46896 * 60.07724 * 1 2 3 32 32 H 1.09003 * 109.45585 * 298.56717 * 4 2 1 33 33 H 1.08988 * 109.44787 * 178.59967 * 4 2 1 34 34 H 1.09007 * 109.49640 * 301.41716 * 5 4 2 35 35 H 1.08995 * 109.49905 * 181.32060 * 5 4 2 36 36 H 1.08995 * 109.58846 * 185.58088 * 6 5 4 37 37 H 1.08997 * 109.70641 * 65.22002 * 6 5 4 38 38 H 1.08990 * 109.47499 * 300.00138 * 10 8 7 39 39 H 1.09000 * 109.46976 * 60.00174 * 10 8 7 40 40 H 1.08002 * 125.95699 * 0.02562 * 12 11 10 41 41 H 1.07993 * 125.52968 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.46854 * 58.18312 * 18 16 7 43 43 H 1.08996 * 109.46929 * 298.17809 * 18 16 7 44 44 H 1.09000 * 109.46595 * 54.92949 * 19 18 16 45 45 H 1.09000 * 109.47161 * 294.93420 * 19 18 16 46 46 H 0.97003 * 120.00027 * 0.02562 * 20 19 18 47 47 H 0.96998 * 120.00063 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5029 -2.1558 1.2661 6 6 2.0139 -2.9041 0.0309 7 7 1.6514 -2.1382 -1.1695 8 6 0.9746 -2.7221 -2.1782 9 8 0.7665 -2.1090 -3.2037 10 6 0.4764 -4.1368 -2.0317 11 7 -0.2228 -4.5374 -3.2552 12 6 0.0382 -5.6141 -4.0166 13 7 -0.8057 -5.6187 -5.0164 14 6 -1.6168 -4.5653 -4.9279 15 7 -1.3023 -3.8757 -3.8630 16 6 2.0412 -0.7239 -1.2496 17 1 3.1273 -0.6465 -1.3005 18 6 1.4228 -0.0913 -2.4979 19 6 1.7929 1.3923 -2.5545 20 7 1.3041 1.9699 -3.8089 21 6 1.5193 3.2944 -4.0824 22 1 2.0497 3.9129 -3.3737 23 6 1.0557 3.8418 -5.2708 24 7 0.4088 3.0882 -6.1344 25 14 1.3499 5.6483 -5.6443 26 1 0.2170 6.4529 -5.1207 27 1 2.6111 6.0888 -4.9959 28 1 1.4554 5.8393 -7.1132 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3634 0.5152 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 1.6987 -0.1958 2.1389 33 1 3.1304 -0.7444 1.2350 34 1 0.4131 -2.1354 1.2541 35 1 1.8479 -2.6628 2.1671 36 1 1.5552 -3.8918 -0.0137 37 1 3.0977 -3.0066 0.0855 38 1 1.3214 -4.8037 -1.8608 39 1 -0.2091 -4.1949 -1.1863 40 1 0.8094 -6.3479 -3.8343 41 1 -2.4083 -4.3226 -5.6214 42 1 0.3384 -0.1939 -2.4580 43 1 1.8031 -0.5948 -3.3867 44 1 2.8765 1.4985 -2.5035 45 1 1.3368 1.9129 -1.7125 46 1 0.8274 1.4145 -4.4454 47 1 0.0851 3.4707 -6.9650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691308520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = 91.153800 kcal Electronic energy + Delta-G solvation = -28317.768771 eV Core-core repulsion = 24538.931227 eV Total energy + Delta-G solvation = -3778.837544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12291 -40.83251 -37.94284 -35.41699 -34.19507 -33.58689 -32.79038 -31.21622 -30.81537 -29.02782 -27.83064 -26.74491 -24.97324 -23.84956 -22.75219 -22.04427 -21.99049 -20.82514 -20.18096 -18.56467 -17.57020 -17.27222 -16.68833 -16.28201 -15.81127 -15.36180 -15.12813 -14.79610 -14.51624 -14.48573 -14.27512 -14.08491 -13.69581 -13.50869 -13.23979 -13.05127 -12.81566 -12.73243 -12.46151 -11.94546 -11.85236 -11.68644 -11.35425 -11.16356 -11.08009 -10.86185 -10.76081 -10.57569 -10.43444 -10.17321 -10.06652 -9.98617 -9.93123 -9.77224 -9.57767 -8.82242 -8.74052 -8.58963 -6.77421 -5.63355 -2.91820 1.55251 2.06493 2.44644 2.82010 2.97703 3.50296 3.54346 3.56968 4.02510 4.21301 4.23950 4.40774 4.57786 4.64643 4.67370 4.70676 4.80001 4.86071 5.02915 5.05748 5.16155 5.25151 5.44794 5.52399 5.59204 5.65274 5.67507 5.70856 5.79022 5.96667 6.01686 6.08190 6.14083 6.23222 6.30362 6.37488 6.42289 6.45444 6.58454 6.63253 6.66866 7.07672 7.16919 7.31465 7.79387 8.03018 8.12278 8.55315 9.65725 10.27870 10.62451 11.59504 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.004053 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.902580 B = 6906.398278 C = 9245.276477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.106 3.894 7 N -0.607 5.607 8 C 0.495 3.505 9 O -0.481 6.481 10 C 0.110 3.890 11 N -0.370 5.370 12 C 0.250 3.750 13 N -0.544 5.544 14 C 0.193 3.807 15 N -0.282 5.282 16 C 0.160 3.840 17 H 0.072 0.928 18 C -0.119 4.119 19 C 0.150 3.850 20 N -0.731 5.731 21 C -0.238 4.238 22 H 0.068 0.932 23 C -0.016 4.016 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.283 1.283 28 H -0.292 1.292 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.217 0.783 41 H 0.217 0.783 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.010 0.990 45 H 0.015 0.985 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -20.983 17.923 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.017 4.017 7 N -0.343 5.343 8 C 0.279 3.721 9 O -0.353 6.353 10 C -0.017 4.017 11 N -0.162 5.162 12 C -0.047 4.047 13 N -0.271 5.271 14 C -0.110 4.110 15 N -0.108 5.108 16 C 0.057 3.943 17 H 0.089 0.911 18 C -0.156 4.156 19 C 0.021 3.979 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.211 4.211 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.208 1.208 28 H -0.218 1.218 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.233 0.767 41 H 0.233 0.767 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.028 0.972 45 H 0.033 0.967 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.350 -20.040 17.374 26.627 hybrid contribution 0.292 0.742 -0.150 0.811 sum 2.642 -19.299 17.224 26.002 Atomic orbital electron populations 1.21874 0.94680 1.01458 1.02294 1.21573 0.96958 1.00098 0.93756 0.89306 1.21562 1.00428 0.95107 0.98163 1.21968 1.01898 0.96629 0.97112 1.21763 1.00604 0.94506 0.84845 1.48106 1.56684 1.11807 1.17663 1.20363 0.79335 0.88030 0.84340 1.90966 1.54139 1.62338 1.27818 1.21677 0.97810 0.96815 0.85382 1.50017 1.25479 1.19470 1.21250 1.26008 0.99248 0.91290 0.88161 1.70513 1.08817 1.24541 1.23266 1.26045 0.99584 0.89514 0.95851 1.78268 1.02301 1.18724 1.11524 1.21353 0.98519 0.78086 0.96322 0.91052 1.22289 1.01725 0.95446 0.96170 1.20775 0.95826 0.91224 0.90038 1.42356 1.67989 1.08711 1.18407 1.19231 1.29776 0.86356 1.01533 0.91373 1.24746 1.01305 0.97893 0.97195 1.69686 1.43187 1.34697 1.10453 0.86211 0.77645 0.85302 0.77177 1.21807 1.20849 1.21811 0.93067 0.93135 0.91352 0.91627 0.91819 0.90945 0.90879 0.90385 0.90921 0.85753 0.86800 0.76710 0.76696 0.90850 0.89251 0.97185 0.96686 0.78091 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.19 37.16 0.30 -1.53 16 2 C -0.10 -1.21 2.25 -90.50 -0.20 -1.41 16 3 H 0.09 1.13 6.86 -51.93 -0.36 0.77 16 4 C -0.11 -0.93 5.43 -26.69 -0.14 -1.07 16 5 C -0.14 -0.84 5.74 -26.61 -0.15 -0.99 16 6 C 0.11 0.63 6.35 -3.70 -0.02 0.60 16 7 N -0.61 -6.34 2.41 -165.22 -0.40 -6.74 16 8 C 0.50 6.21 7.57 -10.98 -0.08 6.13 16 9 O -0.48 -8.81 11.30 5.56 0.06 -8.74 16 10 C 0.11 0.89 5.38 -5.19 -0.03 0.86 16 11 N -0.37 -4.32 3.40 -63.81 -0.22 -4.54 16 12 C 0.25 2.53 12.63 -90.66 -1.14 1.38 16 13 N -0.54 -7.14 11.19 -15.83 -0.18 -7.32 16 14 C 0.19 2.65 13.03 -91.81 -1.20 1.46 16 15 N -0.28 -4.34 11.83 29.29 0.35 -3.99 16 16 C 0.16 2.11 2.74 -67.60 -0.19 1.92 16 17 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -2.20 2.76 -26.73 -0.07 -2.27 16 19 C 0.15 3.26 5.69 -4.04 -0.02 3.23 16 20 N -0.73 -20.36 5.60 -59.91 -0.34 -20.69 16 21 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -30.11 13.06 55.49 0.72 -29.39 16 25 Si 0.91 23.47 29.55 -169.99 -5.02 18.45 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H 0.05 0.61 5.97 -51.93 -0.31 0.30 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.09 6.16 -51.93 -0.32 0.77 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.94 -0.42 0.06 16 34 H 0.07 0.50 6.33 -51.93 -0.33 0.17 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.24 5.93 -51.93 -0.31 -0.07 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.12 0.43 7.67 -51.93 -0.40 0.03 16 39 H 0.11 0.69 7.91 -51.93 -0.41 0.28 16 40 H 0.22 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.22 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.07 1.51 5.52 -51.93 -0.29 1.22 16 43 H 0.09 1.92 6.24 -51.93 -0.32 1.60 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.02 0.33 6.65 -51.93 -0.35 -0.02 16 46 H 0.39 11.61 7.67 -40.82 -0.31 11.30 16 47 H 0.25 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -39.79 365.08 -9.77 -49.56 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.05 Total: 7.41 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.20 Total: 0.48 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -0.06 Total: -72.67 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.06 Total: -8.74 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.79 -9.77 -49.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691308520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.714 kcal (2) G-P(sol) polarization free energy of solvation -39.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds