Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52439 * 2 1 4 4 C 1.53043 * 109.49765 * 120.08144 * 2 1 3 5 5 C 1.53042 * 109.53845 * 58.58103 * 4 2 1 6 6 C 1.53193 * 109.31171 * 61.36869 * 5 4 2 7 7 N 1.46936 * 108.77277 * 305.36446 * 6 5 4 8 8 C 1.34779 * 120.62756 * 233.58598 * 7 6 5 9 9 O 1.21279 * 119.99792 * 185.38782 * 8 7 6 10 10 C 1.50703 * 119.99860 * 5.38806 * 8 7 6 11 11 N 1.46506 * 109.46867 * 179.97438 * 10 8 7 12 12 C 1.34429 * 126.82220 * 125.00066 * 11 10 8 13 13 N 1.30830 * 108.08040 * 179.97438 * 12 11 10 14 14 C 1.33243 * 109.82716 * 0.02562 * 13 12 11 15 15 N 1.30712 * 108.94411 * 359.75063 * 14 13 12 16 16 C 1.46923 * 118.74040 * 53.60767 * 7 6 5 17 17 H 1.09004 * 109.58532 * 66.31762 * 16 7 6 18 18 C 1.53000 * 109.58573 * 186.60122 * 16 7 6 19 19 C 1.53005 * 109.46935 * 178.17591 * 18 16 7 20 20 N 1.46497 * 109.46919 * 174.92644 * 19 18 16 21 21 C 1.36938 * 119.99909 * 179.97438 * 20 19 18 22 22 H 1.07994 * 119.99974 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99838 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00239 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99759 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47496 * 270.00034 * 25 23 21 27 27 H 1.48501 * 109.47451 * 29.99914 * 25 23 21 28 28 H 1.48504 * 109.47212 * 150.00134 * 25 23 21 29 29 H 1.08994 * 109.47353 * 180.08292 * 1 2 3 30 30 H 1.09001 * 109.47299 * 300.08600 * 1 2 3 31 31 H 1.09000 * 109.46896 * 60.07724 * 1 2 3 32 32 H 1.09003 * 109.45585 * 298.56717 * 4 2 1 33 33 H 1.08988 * 109.44787 * 178.59967 * 4 2 1 34 34 H 1.09007 * 109.49640 * 301.41716 * 5 4 2 35 35 H 1.08995 * 109.49905 * 181.32060 * 5 4 2 36 36 H 1.08995 * 109.58846 * 185.58088 * 6 5 4 37 37 H 1.08997 * 109.70641 * 65.22002 * 6 5 4 38 38 H 1.08990 * 109.47499 * 300.00138 * 10 8 7 39 39 H 1.09000 * 109.46976 * 60.00174 * 10 8 7 40 40 H 1.08002 * 125.95699 * 0.02562 * 12 11 10 41 41 H 1.07993 * 125.52968 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.46854 * 58.18312 * 18 16 7 43 43 H 1.08996 * 109.46929 * 298.17809 * 18 16 7 44 44 H 1.09000 * 109.46595 * 54.92949 * 19 18 16 45 45 H 1.09000 * 109.47161 * 294.93420 * 19 18 16 46 46 H 0.97003 * 120.00027 * 0.02562 * 20 19 18 47 47 H 0.96998 * 120.00063 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5029 -2.1558 1.2661 6 6 2.0139 -2.9041 0.0309 7 7 1.6514 -2.1382 -1.1695 8 6 0.9746 -2.7221 -2.1782 9 8 0.7665 -2.1090 -3.2037 10 6 0.4764 -4.1368 -2.0317 11 7 -0.2228 -4.5374 -3.2552 12 6 0.0382 -5.6141 -4.0166 13 7 -0.8057 -5.6187 -5.0164 14 6 -1.6168 -4.5653 -4.9279 15 7 -1.3023 -3.8757 -3.8630 16 6 2.0412 -0.7239 -1.2496 17 1 3.1273 -0.6465 -1.3005 18 6 1.4228 -0.0913 -2.4979 19 6 1.7929 1.3923 -2.5545 20 7 1.3041 1.9699 -3.8089 21 6 1.5193 3.2944 -4.0824 22 1 2.0497 3.9129 -3.3737 23 6 1.0557 3.8418 -5.2708 24 7 0.4088 3.0882 -6.1344 25 14 1.3499 5.6483 -5.6443 26 1 0.2170 6.4529 -5.1207 27 1 2.6111 6.0888 -4.9959 28 1 1.4554 5.8393 -7.1132 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3634 0.5152 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 1.6987 -0.1958 2.1389 33 1 3.1304 -0.7444 1.2350 34 1 0.4131 -2.1354 1.2541 35 1 1.8479 -2.6628 2.1671 36 1 1.5552 -3.8918 -0.0137 37 1 3.0977 -3.0066 0.0855 38 1 1.3214 -4.8037 -1.8608 39 1 -0.2091 -4.1949 -1.1863 40 1 0.8094 -6.3479 -3.8343 41 1 -2.4083 -4.3226 -5.6214 42 1 0.3384 -0.1939 -2.4580 43 1 1.8031 -0.5948 -3.3867 44 1 2.8765 1.4985 -2.5035 45 1 1.3368 1.9129 -1.7125 46 1 0.8274 1.4145 -4.4454 47 1 0.0851 3.4707 -6.9650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691308520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 63.866645 kcal Electronic energy + Delta-G solvation = -28318.952031 eV Core-core repulsion = 24538.931227 eV Total energy + Delta-G solvation = -3780.020804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.99279 -41.77181 -38.90321 -37.05240 -35.39261 -34.52715 -34.14721 -32.56230 -32.13938 -30.14918 -29.09677 -27.65977 -26.31245 -25.17049 -24.08592 -23.13749 -22.88240 -22.09160 -21.12554 -19.45757 -19.22231 -18.32388 -17.86643 -17.24529 -16.86426 -16.56328 -16.33680 -16.01569 -15.62411 -15.35115 -15.33618 -15.18518 -14.97428 -14.86317 -14.57301 -14.17878 -14.14131 -13.59137 -13.53213 -13.17391 -12.99306 -12.87999 -12.73138 -12.53468 -12.40349 -12.34205 -12.12667 -11.90049 -11.77243 -11.73026 -11.33065 -11.23200 -11.00170 -10.95866 -10.88399 -10.73426 -9.93789 -9.51857 -9.05675 -7.98262 -5.29735 0.71499 1.35346 1.41369 1.45806 1.54324 1.57069 1.97777 2.07397 2.52351 3.28645 3.33927 3.54311 3.64318 3.75396 3.79240 3.90244 4.04120 4.08214 4.10246 4.13683 4.23900 4.37504 4.41322 4.46254 4.55546 4.60423 4.69424 4.74937 4.79679 4.82259 4.91344 4.99092 5.13785 5.20242 5.25300 5.26936 5.33309 5.39196 5.40372 5.46780 5.50958 5.56608 5.73098 5.93290 6.22270 6.44876 7.14013 7.23033 7.26538 8.03419 8.27903 9.26058 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.004053 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.902580 B = 6906.398278 C = 9245.276477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.135 4.135 6 C 0.098 3.902 7 N -0.600 5.600 8 C 0.484 3.516 9 O -0.553 6.553 10 C 0.112 3.888 11 N -0.376 5.376 12 C 0.263 3.737 13 N -0.577 5.577 14 C 0.181 3.819 15 N -0.337 5.337 16 C 0.166 3.834 17 H 0.078 0.922 18 C -0.091 4.091 19 C 0.150 3.850 20 N -0.749 5.749 21 C -0.250 4.250 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.975 5.975 25 Si 0.982 3.018 26 H -0.284 1.284 27 H -0.264 1.264 28 H -0.293 1.293 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.185 0.815 39 H 0.141 0.859 40 H 0.272 0.728 41 H 0.226 0.774 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.016 0.984 45 H 0.022 0.978 46 H 0.367 0.633 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -22.954 21.378 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.023 4.023 7 N -0.334 5.334 8 C 0.271 3.729 9 O -0.430 6.430 10 C -0.013 4.013 11 N -0.167 5.167 12 C -0.033 4.033 13 N -0.305 5.305 14 C -0.122 4.122 15 N -0.164 5.164 16 C 0.062 3.938 17 H 0.096 0.904 18 C -0.129 4.129 19 C 0.023 3.977 20 N -0.391 5.391 21 C -0.381 4.381 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.626 5.626 25 Si 0.810 3.190 26 H -0.211 1.211 27 H -0.189 1.189 28 H -0.220 1.220 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.202 0.798 39 H 0.159 0.841 40 H 0.288 0.712 41 H 0.242 0.758 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.039 0.961 46 H 0.198 0.802 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.448 -22.035 20.944 30.724 hybrid contribution -0.300 1.308 -1.139 1.761 sum 4.148 -20.726 19.805 28.966 Atomic orbital electron populations 1.21796 0.95734 1.01506 1.00586 1.21529 0.95916 0.99652 0.95001 0.91043 1.21543 1.01134 0.96217 0.95842 1.21985 1.01400 0.95313 0.98551 1.22232 1.02333 0.95485 0.82261 1.48185 1.55686 1.10644 1.18930 1.21251 0.78457 0.89691 0.83519 1.90960 1.56857 1.64506 1.30709 1.22100 0.99938 0.94492 0.84768 1.50174 1.24794 1.19527 1.22199 1.27058 0.98739 0.91088 0.86372 1.70497 1.09963 1.24866 1.25128 1.26365 1.00163 0.89752 0.95945 1.78159 1.04718 1.20693 1.12838 1.21081 0.98311 0.80229 0.94193 0.90364 1.21904 1.00029 0.93064 0.97939 1.20963 0.95622 0.93455 0.87675 1.42654 1.68114 1.08351 1.19956 1.19713 1.29255 0.87359 1.01819 0.90338 1.25741 1.01426 1.03048 0.97072 1.69891 1.44761 1.36995 1.10912 0.85015 0.78232 0.79087 0.76666 1.21078 1.18896 1.21987 0.92184 0.91772 0.95959 0.90831 0.90606 0.91731 0.87542 0.86356 0.88908 0.79785 0.84131 0.71243 0.75753 0.93695 0.92643 0.96646 0.96052 0.80182 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.19 71.98 0.59 -2.95 16 2 C -0.10 -2.27 2.25 -10.71 -0.02 -2.29 16 3 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 4 C -0.11 -1.39 5.43 30.62 0.17 -1.23 16 5 C -0.13 -0.98 5.74 30.67 0.18 -0.81 16 6 C 0.10 0.65 6.35 86.36 0.55 1.20 16 7 N -0.60 -11.33 2.41 -795.01 -1.92 -13.25 16 8 C 0.48 11.72 7.57 87.66 0.66 12.38 16 9 O -0.55 -21.51 11.30 -3.03 -0.03 -21.54 16 10 C 0.11 1.42 5.38 85.63 0.46 1.88 16 11 N -0.38 -8.22 3.40 -355.80 -1.21 -9.43 16 12 C 0.26 4.71 12.63 180.36 2.28 6.99 16 13 N -0.58 -14.97 11.19 -204.01 -2.28 -17.25 16 14 C 0.18 5.23 13.03 180.76 2.36 7.58 16 15 N -0.34 -10.79 11.83 -61.25 -0.72 -11.51 16 16 C 0.17 4.34 2.74 44.98 0.12 4.47 16 17 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 18 C -0.09 -3.64 2.76 30.60 0.08 -3.56 16 19 C 0.15 6.88 5.69 86.38 0.49 7.37 16 20 N -0.75 -44.17 5.60 -343.45 -1.92 -46.09 16 21 C -0.25 -15.40 9.99 84.03 0.84 -14.57 16 22 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 23 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 24 N -0.97 -65.70 13.06 21.65 0.28 -65.42 16 25 Si 0.98 49.26 29.55 68.60 2.03 51.28 16 26 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 28 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 29 H 0.06 1.39 5.97 -2.39 -0.01 1.38 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.02 0.75 6.16 -2.39 -0.01 0.74 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.62 6.33 -2.38 -0.02 0.61 16 35 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.12 -0.11 5.93 -2.39 -0.01 -0.12 16 37 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.19 0.06 7.67 -2.39 -0.02 0.04 16 39 H 0.14 1.08 7.91 -2.39 -0.02 1.06 16 40 H 0.27 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.23 5.37 8.06 -2.91 -0.02 5.35 16 42 H 0.04 2.03 5.52 -2.39 -0.01 2.02 16 43 H 0.06 2.60 6.24 -2.39 -0.01 2.58 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.02 0.97 6.65 -2.39 -0.02 0.95 16 46 H 0.37 23.86 7.67 -92.71 -0.71 23.15 16 47 H 0.25 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -96.88 365.08 3.71 -93.17 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.28 Total: 28.18 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 9.22 Total: 11.86 kcal Atomic # 7 Polarization: -155.17 SS G_CDS: -7.78 Total: -162.94 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.03 Total: -21.54 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.28 kcal Total: -96.88 3.71 -93.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691308520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.032 kcal (2) G-P(sol) polarization free energy of solvation -96.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds