Wall clock time and date at job start Fri Apr 10 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46695 * 2 1 4 4 C 1.50697 * 109.47088 * 119.99547 * 2 1 3 5 5 O 1.21284 * 120.00063 * 101.66847 * 4 2 1 6 6 N 1.34780 * 120.00243 * 281.67224 * 4 2 1 7 7 C 1.46930 * 120.62723 * 5.90523 * 6 4 2 8 8 C 1.53185 * 108.77439 * 126.37089 * 7 6 4 9 9 C 1.53037 * 109.31356 * 54.63461 * 8 7 6 10 10 H 1.08999 * 109.45522 * 58.64757 * 9 8 7 11 11 C 1.53005 * 109.46233 * 178.61491 * 9 8 7 12 12 C 1.53046 * 109.53694 * 298.63046 * 9 8 7 13 13 C 1.46924 * 120.63003 * 185.88082 * 6 4 2 14 14 H 1.09007 * 109.70055 * 113.77479 * 13 6 4 15 15 C 1.52988 * 109.58916 * 353.41783 * 13 6 4 16 16 N 1.46503 * 109.47526 * 68.61890 * 15 13 6 17 17 C 1.36932 * 120.00644 * 175.08112 * 16 15 13 18 18 H 1.08008 * 119.99625 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00295 * 179.72004 * 17 16 15 20 20 N 1.31619 * 119.99865 * 0.27913 * 19 17 16 21 21 Si 1.86808 * 120.00102 * 180.27261 * 19 17 16 22 22 H 1.48496 * 109.46664 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46733 * 120.00427 * 21 19 17 24 24 H 1.48491 * 109.47193 * 240.00334 * 21 19 17 25 25 N 1.46499 * 109.46911 * 239.99810 * 2 1 3 26 26 C 1.34430 * 126.82252 * 324.70500 * 25 2 1 27 27 N 1.30837 * 108.07700 * 179.89765 * 26 25 2 28 28 C 1.33247 * 109.82545 * 0.38552 * 27 26 25 29 29 N 1.30714 * 108.95052 * 359.75874 * 28 27 26 30 30 H 1.09002 * 109.47234 * 64.71068 * 1 2 3 31 31 H 1.09007 * 109.47240 * 184.70808 * 1 2 3 32 32 H 1.09005 * 109.47370 * 304.71136 * 1 2 3 33 33 H 1.09004 * 109.58826 * 6.58013 * 7 6 4 34 34 H 1.09000 * 109.70134 * 246.22841 * 7 6 4 35 35 H 1.09003 * 109.49988 * 294.68122 * 8 7 6 36 36 H 1.09003 * 109.49988 * 174.58288 * 8 7 6 37 37 H 1.08997 * 109.47386 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.46871 * 300.06561 * 11 9 8 39 39 H 1.09005 * 109.46892 * 60.06353 * 11 9 8 40 40 H 1.08997 * 109.49768 * 301.41494 * 12 9 8 41 41 H 1.09002 * 109.49462 * 181.31582 * 12 9 8 42 42 H 1.09002 * 109.47663 * 308.61807 * 15 13 6 43 43 H 1.09002 * 109.47534 * 188.62016 * 15 13 6 44 44 H 0.97001 * 119.99230 * 355.07454 * 16 15 13 45 45 H 0.97006 * 119.99797 * 179.97438 * 20 19 17 46 46 H 1.07994 * 125.96467 * 0.04311 * 26 25 2 47 47 H 1.08003 * 125.52606 * 179.73287 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4347 -1.8516 1.1501 6 7 2.0343 -0.0773 2.4204 7 6 1.4324 1.2557 2.5602 8 6 0.4141 1.2193 3.7040 9 6 1.0960 0.7014 4.9725 10 1 1.9346 1.3504 5.2246 11 6 0.0907 0.6963 6.1259 12 6 1.6062 -0.7218 4.7346 13 6 2.6380 -0.7074 3.6024 14 1 3.5147 -0.1396 3.9142 15 6 3.0494 -2.1419 3.2653 16 7 4.1681 -2.1197 2.3196 17 6 4.7746 -3.2900 1.9487 18 1 4.4284 -4.2296 2.3537 19 6 5.8307 -3.2695 1.0483 20 7 6.2529 -2.1245 0.5552 21 14 6.6531 -4.8668 0.5365 22 1 5.9963 -6.0052 1.2278 23 1 6.5259 -5.0403 -0.9328 24 1 8.0904 -4.8246 0.9074 25 7 2.0183 -0.6907 -1.1961 26 6 1.4587 -1.7553 -1.7966 27 7 2.1940 -2.0705 -2.8319 28 6 3.2314 -1.2388 -2.9195 29 7 3.1675 -0.3758 -1.9397 30 1 -0.3634 0.4390 -0.9292 31 1 -0.3634 -1.0243 0.0844 32 1 -0.3634 0.5852 0.8448 33 1 0.9300 1.5289 1.6322 34 1 2.2083 1.9875 2.7848 35 1 -0.4093 0.5568 3.4372 36 1 0.0304 2.2240 3.8817 37 1 0.5763 0.3279 7.0295 38 1 -0.2728 1.7098 6.2955 39 1 -0.7478 0.0469 5.8741 40 1 0.7715 -1.3660 4.4581 41 1 2.0710 -1.0986 5.6457 42 1 2.2053 -2.6662 2.8172 43 1 3.3542 -2.6563 4.1766 44 1 4.4791 -1.2759 1.9561 45 1 6.9913 -2.1101 -0.0738 46 1 0.5580 -2.2607 -1.4810 47 1 4.0006 -1.2724 -3.6769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691349509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:16 Heat of formation + Delta-G solvation = 114.134688 kcal Electronic energy + Delta-G solvation = -29541.164544 eV Core-core repulsion = 25763.323527 eV Total energy + Delta-G solvation = -3777.841018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64275 -40.29822 -37.53526 -35.42487 -34.01299 -33.59405 -31.97996 -30.84489 -29.86581 -29.63668 -28.30253 -25.54896 -24.89184 -23.37611 -22.81518 -22.22154 -21.37818 -20.77797 -20.10444 -18.87068 -17.31840 -16.83199 -16.52729 -15.61269 -15.10414 -14.93061 -14.81358 -14.58120 -14.32837 -14.08914 -13.89323 -13.64551 -13.53152 -13.35377 -13.04345 -12.86360 -12.44762 -12.39352 -12.12717 -12.09797 -11.90255 -11.77999 -11.61414 -11.21377 -11.06024 -10.95041 -10.73085 -10.69354 -10.50747 -10.26270 -9.83245 -9.58373 -9.53954 -9.47682 -9.19888 -8.72420 -8.32642 -8.15363 -6.50328 -5.51867 -2.72883 2.06604 2.59175 3.13310 3.33329 3.52132 3.57027 3.62036 3.64093 4.46353 4.56886 4.63824 4.68165 4.73499 4.79588 4.82090 4.82986 5.06418 5.15606 5.18063 5.33338 5.36403 5.42262 5.47463 5.51659 5.57500 5.62488 5.68470 5.70250 5.80764 5.83247 5.88354 5.98419 6.04230 6.05926 6.08848 6.34440 6.51458 6.59792 6.68126 6.87353 6.94768 7.19115 7.23533 7.79755 7.89887 8.57676 8.64232 8.76096 9.76255 10.34470 10.68319 11.70881 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.006065 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.234446 B = 4615.309360 C = 6695.289132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.114 0.886 4 C 0.460 3.540 5 O -0.422 6.422 6 N -0.611 5.611 7 C 0.104 3.896 8 C -0.128 4.128 9 C -0.092 4.092 10 H 0.071 0.929 11 C -0.145 4.145 12 C -0.120 4.120 13 C 0.144 3.856 14 H 0.069 0.931 15 C 0.161 3.839 16 N -0.694 5.694 17 C -0.214 4.214 18 H 0.063 0.937 19 C -0.015 4.015 20 N -0.929 5.929 21 Si 0.898 3.102 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.295 1.295 25 N -0.356 5.356 26 C 0.268 3.732 27 N -0.550 5.550 28 C 0.199 3.801 29 N -0.298 5.298 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.014 0.986 44 H 0.379 0.621 45 H 0.249 0.751 46 H 0.207 0.793 47 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 11.184 5.168 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.132 0.868 4 C 0.242 3.758 5 O -0.288 6.288 6 N -0.350 5.350 7 C -0.019 4.019 8 C -0.166 4.166 9 C -0.111 4.111 10 H 0.089 0.911 11 C -0.202 4.202 12 C -0.159 4.159 13 C 0.041 3.959 14 H 0.087 0.913 15 C 0.033 3.967 16 N -0.337 5.337 17 C -0.346 4.346 18 H 0.081 0.919 19 C -0.210 4.210 20 N -0.579 5.579 21 Si 0.730 3.270 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.223 1.223 25 N -0.147 5.147 26 C -0.029 4.029 27 N -0.277 5.277 28 C -0.104 4.104 29 N -0.124 5.124 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.212 0.788 45 H 0.059 0.941 46 H 0.223 0.777 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -16.643 10.650 5.026 20.388 hybrid contribution 0.605 -0.552 -0.237 0.852 sum -16.039 10.098 4.789 19.548 Atomic orbital electron populations 1.22193 0.91200 1.04336 1.04097 1.21142 0.95400 0.97538 0.82530 0.86840 1.20335 0.82828 0.88865 0.83747 1.91187 1.38260 1.15598 1.83729 1.47725 1.60447 1.18002 1.08809 1.21737 0.96065 0.85083 0.99051 1.21978 0.98185 1.01415 0.95005 1.21110 0.98190 0.97125 0.94633 0.91074 1.21815 0.99038 1.01376 0.97996 1.21970 0.99188 0.96292 0.98467 1.21504 0.94139 0.96256 0.83970 0.91342 1.20887 0.92643 0.90932 0.92220 1.42253 1.34316 1.06748 1.50421 1.19109 1.09189 0.86667 1.19627 0.91882 1.24599 0.99888 0.96228 1.00328 1.69668 1.29771 1.23208 1.35205 0.86231 0.79007 0.83559 0.78177 1.20900 1.22161 1.22295 1.49950 1.18899 1.24387 1.21441 1.25627 0.99129 0.88175 0.89956 1.70479 1.07483 1.28303 1.21462 1.25784 0.96942 0.90533 0.97177 1.78075 1.01489 1.25743 1.07122 0.90607 0.90812 0.89310 0.90178 0.91637 0.91492 0.91051 0.92658 0.92894 0.92791 0.91514 0.90886 0.94408 0.96810 0.78770 0.94123 0.77656 0.77316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.44 37.16 0.31 -1.14 16 2 C 0.14 2.02 2.90 -69.08 -0.20 1.82 16 3 H 0.11 1.50 7.21 -51.93 -0.37 1.13 16 4 C 0.46 8.07 6.32 -10.99 -0.07 8.00 16 5 O -0.42 -9.71 10.08 5.55 0.06 -9.65 16 6 N -0.61 -8.88 2.97 -165.23 -0.49 -9.37 16 7 C 0.10 1.03 5.81 -3.71 -0.02 1.01 16 8 C -0.13 -1.02 5.36 -26.62 -0.14 -1.16 16 9 C -0.09 -0.84 2.68 -90.57 -0.24 -1.08 16 10 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.14 -1.11 9.19 37.16 0.34 -0.77 16 12 C -0.12 -1.43 4.65 -26.61 -0.12 -1.55 16 13 C 0.14 2.30 2.93 -67.61 -0.20 2.11 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.16 3.40 4.87 -4.05 -0.02 3.39 16 16 N -0.69 -18.58 3.21 -59.91 -0.19 -18.77 16 17 C -0.21 -6.45 9.69 -15.06 -0.15 -6.59 16 18 H 0.06 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -30.04 13.06 55.49 0.72 -29.32 16 21 Si 0.90 24.49 29.55 -169.99 -5.02 19.47 16 22 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.29 -8.18 7.11 56.52 0.40 -7.78 16 24 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 25 N -0.36 -6.35 3.18 -57.25 -0.18 -6.53 16 26 C 0.27 4.62 11.54 -90.65 -1.05 3.58 16 27 N -0.55 -10.68 11.19 -15.83 -0.18 -10.85 16 28 C 0.20 3.87 13.03 -91.81 -1.20 2.68 16 29 N -0.30 -6.17 12.70 29.29 0.37 -5.80 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 32 H 0.09 0.60 6.23 -51.93 -0.32 0.28 16 33 H 0.08 0.64 4.35 -51.93 -0.23 0.41 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.87 6.37 -51.93 -0.33 0.53 16 43 H 0.01 0.30 8.13 -51.93 -0.42 -0.12 16 44 H 0.38 10.94 7.00 -40.82 -0.29 10.65 16 45 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 46 H 0.21 2.70 7.46 -52.49 -0.39 2.31 16 47 H 0.21 3.38 8.06 -52.48 -0.42 2.96 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -38.77 368.15 -9.57 -48.34 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.36 Total: 7.24 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.85 Total: 9.70 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: 0.05 Total: -80.65 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.02 Total: 19.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.77 -9.57 -48.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691349509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.479 kcal (2) G-P(sol) polarization free energy of solvation -38.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds