Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46695 * 2 1 4 4 C 1.50697 * 109.47088 * 119.99547 * 2 1 3 5 5 O 1.21284 * 120.00063 * 101.66847 * 4 2 1 6 6 N 1.34780 * 120.00243 * 281.67224 * 4 2 1 7 7 C 1.46930 * 120.62723 * 5.90523 * 6 4 2 8 8 C 1.53185 * 108.77439 * 126.37089 * 7 6 4 9 9 C 1.53037 * 109.31356 * 54.63461 * 8 7 6 10 10 H 1.08999 * 109.45522 * 58.64757 * 9 8 7 11 11 C 1.53005 * 109.46233 * 178.61491 * 9 8 7 12 12 C 1.53046 * 109.53694 * 298.63046 * 9 8 7 13 13 C 1.46924 * 120.63003 * 185.88082 * 6 4 2 14 14 H 1.09007 * 109.70055 * 113.77479 * 13 6 4 15 15 C 1.52988 * 109.58916 * 353.41783 * 13 6 4 16 16 N 1.46503 * 109.47526 * 68.61890 * 15 13 6 17 17 C 1.36932 * 120.00644 * 175.08112 * 16 15 13 18 18 H 1.08008 * 119.99625 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00295 * 179.72004 * 17 16 15 20 20 N 1.31619 * 119.99865 * 0.27913 * 19 17 16 21 21 Si 1.86808 * 120.00102 * 180.27261 * 19 17 16 22 22 H 1.48496 * 109.46664 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46733 * 120.00427 * 21 19 17 24 24 H 1.48491 * 109.47193 * 240.00334 * 21 19 17 25 25 N 1.46499 * 109.46911 * 239.99810 * 2 1 3 26 26 C 1.34430 * 126.82252 * 324.70500 * 25 2 1 27 27 N 1.30837 * 108.07700 * 179.89765 * 26 25 2 28 28 C 1.33247 * 109.82545 * 0.38552 * 27 26 25 29 29 N 1.30714 * 108.95052 * 359.75874 * 28 27 26 30 30 H 1.09002 * 109.47234 * 64.71068 * 1 2 3 31 31 H 1.09007 * 109.47240 * 184.70808 * 1 2 3 32 32 H 1.09005 * 109.47370 * 304.71136 * 1 2 3 33 33 H 1.09004 * 109.58826 * 6.58013 * 7 6 4 34 34 H 1.09000 * 109.70134 * 246.22841 * 7 6 4 35 35 H 1.09003 * 109.49988 * 294.68122 * 8 7 6 36 36 H 1.09003 * 109.49988 * 174.58288 * 8 7 6 37 37 H 1.08997 * 109.47386 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.46871 * 300.06561 * 11 9 8 39 39 H 1.09005 * 109.46892 * 60.06353 * 11 9 8 40 40 H 1.08997 * 109.49768 * 301.41494 * 12 9 8 41 41 H 1.09002 * 109.49462 * 181.31582 * 12 9 8 42 42 H 1.09002 * 109.47663 * 308.61807 * 15 13 6 43 43 H 1.09002 * 109.47534 * 188.62016 * 15 13 6 44 44 H 0.97001 * 119.99230 * 355.07454 * 16 15 13 45 45 H 0.97006 * 119.99797 * 179.97438 * 20 19 17 46 46 H 1.07994 * 125.96467 * 0.04311 * 26 25 2 47 47 H 1.08003 * 125.52606 * 179.73287 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4347 -1.8516 1.1501 6 7 2.0343 -0.0773 2.4204 7 6 1.4324 1.2557 2.5602 8 6 0.4141 1.2193 3.7040 9 6 1.0960 0.7014 4.9725 10 1 1.9346 1.3504 5.2246 11 6 0.0907 0.6963 6.1259 12 6 1.6062 -0.7218 4.7346 13 6 2.6380 -0.7074 3.6024 14 1 3.5147 -0.1396 3.9142 15 6 3.0494 -2.1419 3.2653 16 7 4.1681 -2.1197 2.3196 17 6 4.7746 -3.2900 1.9487 18 1 4.4284 -4.2296 2.3537 19 6 5.8307 -3.2695 1.0483 20 7 6.2529 -2.1245 0.5552 21 14 6.6531 -4.8668 0.5365 22 1 5.9963 -6.0052 1.2278 23 1 6.5259 -5.0403 -0.9328 24 1 8.0904 -4.8246 0.9074 25 7 2.0183 -0.6907 -1.1961 26 6 1.4587 -1.7553 -1.7966 27 7 2.1940 -2.0705 -2.8319 28 6 3.2314 -1.2388 -2.9195 29 7 3.1675 -0.3758 -1.9397 30 1 -0.3634 0.4390 -0.9292 31 1 -0.3634 -1.0243 0.0844 32 1 -0.3634 0.5852 0.8448 33 1 0.9300 1.5289 1.6322 34 1 2.2083 1.9875 2.7848 35 1 -0.4093 0.5568 3.4372 36 1 0.0304 2.2240 3.8817 37 1 0.5763 0.3279 7.0295 38 1 -0.2728 1.7098 6.2955 39 1 -0.7478 0.0469 5.8741 40 1 0.7715 -1.3660 4.4581 41 1 2.0710 -1.0986 5.6457 42 1 2.2053 -2.6662 2.8172 43 1 3.3542 -2.6563 4.1766 44 1 4.4791 -1.2759 1.9561 45 1 6.9913 -2.1101 -0.0738 46 1 0.5580 -2.2607 -1.4810 47 1 4.0006 -1.2724 -3.6769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691349509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = 88.788526 kcal Electronic energy + Delta-G solvation = -29542.263637 eV Core-core repulsion = 25763.323527 eV Total energy + Delta-G solvation = -3778.940110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.01916 -41.56390 -38.63875 -36.91945 -35.60640 -34.75470 -33.66349 -32.25974 -31.60876 -30.77526 -29.24124 -27.17446 -26.05318 -24.56938 -24.19992 -23.73189 -22.78397 -22.13885 -21.05266 -20.11442 -19.18841 -18.11709 -17.99077 -16.85432 -16.76116 -16.29012 -16.05960 -15.97511 -15.46530 -15.38336 -15.26710 -14.89867 -14.86719 -14.58626 -14.56051 -14.18011 -13.77911 -13.38370 -13.27939 -13.16982 -13.08948 -12.90039 -12.75267 -12.67032 -12.53576 -12.41645 -12.14928 -12.04274 -11.88403 -11.67319 -11.27607 -11.18401 -11.03692 -10.99769 -10.87169 -10.66159 -9.77409 -9.50166 -8.64995 -7.87058 -5.05769 0.68462 1.34155 1.36049 1.39493 1.47076 1.85978 2.05481 2.16056 2.56120 3.37723 3.46482 3.48212 3.61483 3.75226 3.76318 3.86143 3.92712 3.99756 4.10592 4.30873 4.32404 4.34991 4.45878 4.54031 4.59578 4.65407 4.72035 4.81720 4.85350 4.93028 4.96297 5.03577 5.07646 5.15715 5.18795 5.24249 5.32670 5.36087 5.45417 5.49292 5.52068 5.60932 5.78997 5.94515 6.32185 6.57455 7.15629 7.38499 7.45327 8.19338 8.40766 9.36173 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.006065 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.234446 B = 4615.309360 C = 6695.289132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 H 0.125 0.875 4 C 0.462 3.538 5 O -0.491 6.491 6 N -0.605 5.605 7 C 0.094 3.906 8 C -0.120 4.120 9 C -0.089 4.089 10 H 0.069 0.931 11 C -0.140 4.140 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.055 0.945 15 C 0.164 3.836 16 N -0.701 5.701 17 C -0.210 4.210 18 H 0.058 0.942 19 C -0.077 4.077 20 N -0.962 5.962 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.303 1.303 24 H -0.291 1.291 25 N -0.358 5.358 26 C 0.269 3.731 27 N -0.576 5.576 28 C 0.186 3.814 29 N -0.340 5.340 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.008 0.992 44 H 0.364 0.636 45 H 0.241 0.759 46 H 0.243 0.757 47 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 12.761 6.430 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.032 3.968 3 H 0.143 0.857 4 C 0.246 3.754 5 O -0.362 6.362 6 N -0.343 5.343 7 C -0.027 4.027 8 C -0.158 4.158 9 C -0.108 4.108 10 H 0.088 0.912 11 C -0.197 4.197 12 C -0.148 4.148 13 C 0.047 3.953 14 H 0.073 0.927 15 C 0.037 3.963 16 N -0.342 5.342 17 C -0.343 4.343 18 H 0.076 0.924 19 C -0.269 4.269 20 N -0.615 5.615 21 Si 0.788 3.212 22 H -0.197 1.197 23 H -0.232 1.232 24 H -0.218 1.218 25 N -0.148 5.148 26 C -0.028 4.028 27 N -0.304 5.304 28 C -0.117 4.117 29 N -0.167 5.167 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.026 0.974 44 H 0.196 0.804 45 H 0.050 0.950 46 H 0.259 0.741 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.662 12.271 6.365 24.035 hybrid contribution 1.414 -0.990 -0.533 1.806 sum -18.249 11.281 5.832 22.232 Atomic orbital electron populations 1.22256 0.86681 1.05304 1.06536 1.21527 0.98669 0.96886 0.79721 0.85695 1.21031 0.80936 0.88241 0.85217 1.91163 1.41829 1.18449 1.84710 1.47874 1.59393 1.19466 1.07534 1.22143 0.96815 0.82254 1.01481 1.21969 0.97338 1.03394 0.93059 1.21104 0.98775 0.94723 0.96179 0.91207 1.21762 0.98463 1.02525 0.96967 1.21894 0.97723 0.98762 0.96465 1.21312 0.95327 0.92739 0.85927 0.92712 1.20925 0.90486 0.94615 0.90232 1.42283 1.35663 1.04935 1.51299 1.19386 1.08659 0.87634 1.18641 0.92432 1.25273 1.01244 0.99051 1.01304 1.69825 1.30428 1.24956 1.36265 0.85278 0.78226 0.80643 0.77007 1.19652 1.23166 1.21788 1.50150 1.18000 1.24716 1.21928 1.26321 0.99632 0.87698 0.89100 1.70464 1.08060 1.28990 1.22905 1.26247 0.97507 0.90401 0.97503 1.77959 1.03390 1.27143 1.08162 0.88641 0.90745 0.86169 0.87635 0.91278 0.90759 0.87853 0.92964 0.91187 0.92505 0.91580 0.90787 0.95678 0.97387 0.80417 0.94979 0.74143 0.75584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.44 71.98 0.61 -1.55 16 2 C 0.14 3.70 2.90 44.24 0.13 3.83 16 3 H 0.13 3.03 7.21 -2.39 -0.02 3.02 16 4 C 0.46 15.92 6.32 87.66 0.55 16.47 16 5 O -0.49 -23.05 10.08 -3.04 -0.03 -23.08 16 6 N -0.61 -16.76 2.97 -795.04 -2.36 -19.13 16 7 C 0.09 1.54 5.81 86.36 0.50 2.04 16 8 C -0.12 -1.35 5.36 30.67 0.16 -1.19 16 9 C -0.09 -1.33 2.68 -10.76 -0.03 -1.36 16 10 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 11 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 12 C -0.11 -2.41 4.65 30.67 0.14 -2.27 16 13 C 0.15 4.76 2.93 44.97 0.13 4.89 16 14 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 15 C 0.16 7.13 4.87 86.37 0.42 7.55 16 16 N -0.70 -38.88 3.21 -343.46 -1.10 -39.98 16 17 C -0.21 -13.06 9.69 84.03 0.81 -12.25 16 18 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 19 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 20 N -0.96 -64.48 13.06 21.65 0.28 -64.20 16 21 Si 0.96 51.90 29.55 68.60 2.03 53.93 16 22 H -0.27 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.30 -16.79 7.11 99.48 0.71 -16.08 16 24 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 25 N -0.36 -12.61 3.18 -335.03 -1.07 -13.67 16 26 C 0.27 9.13 11.54 180.36 2.08 11.21 16 27 N -0.58 -22.56 11.19 -203.99 -2.28 -24.84 16 28 C 0.19 7.45 13.03 180.76 2.36 9.80 16 29 N -0.34 -14.34 12.70 -61.24 -0.78 -15.12 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.12 7.47 -2.38 -0.02 1.10 16 32 H 0.12 0.98 6.23 -2.38 -0.01 0.97 16 33 H 0.11 1.19 4.35 -2.38 -0.01 1.18 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.03 1.19 6.37 -2.39 -0.02 1.17 16 43 H 0.01 0.37 8.13 -2.39 -0.02 0.35 16 44 H 0.36 21.93 7.00 -92.71 -0.65 21.28 16 45 H 0.24 15.87 8.31 -92.70 -0.77 15.10 16 46 H 0.24 5.94 7.46 -2.91 -0.02 5.92 16 47 H 0.23 7.62 8.06 -2.91 -0.02 7.59 16 Total: -1.00 -89.73 368.15 4.02 -85.72 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.32 Total: 28.58 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: 9.00 Total: 31.80 kcal Atomic # 7 Polarization: -169.64 SS G_CDS: -7.31 Total: -176.94 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.03 Total: -23.08 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.03 Total: 53.93 kcal Total: -89.73 4.02 -85.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691349509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.507 kcal (2) G-P(sol) polarization free energy of solvation -89.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds