Wall clock time and date at job start Fri Apr 10 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46665 * 2 1 4 4 C 1.50700 * 109.47487 * 239.99896 * 2 1 3 5 5 O 1.21276 * 120.00085 * 250.70207 * 4 2 1 6 6 N 1.34777 * 119.99932 * 70.70262 * 4 2 1 7 7 C 1.46930 * 120.63228 * 5.19087 * 6 4 2 8 8 C 1.53189 * 108.77747 * 126.36489 * 7 6 4 9 9 C 1.53042 * 109.30845 * 54.63644 * 8 7 6 10 10 H 1.08999 * 109.45111 * 58.64968 * 9 8 7 11 11 C 1.53003 * 109.45645 * 178.61129 * 9 8 7 12 12 C 1.53038 * 109.54021 * 298.63150 * 9 8 7 13 13 C 1.46924 * 120.63155 * 185.16098 * 6 4 2 14 14 H 1.09004 * 109.70451 * 113.77451 * 13 6 4 15 15 C 1.52999 * 109.58368 * 353.42369 * 13 6 4 16 16 N 1.46495 * 109.47524 * 68.26344 * 15 13 6 17 17 C 1.36938 * 120.00181 * 173.97904 * 16 15 13 18 18 H 1.07997 * 120.00317 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99703 * 179.72564 * 17 16 15 20 20 N 1.31622 * 120.00185 * 0.26227 * 19 17 16 21 21 Si 1.86800 * 119.99782 * 180.27324 * 19 17 16 22 22 H 1.48503 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47265 * 119.99475 * 21 19 17 24 24 H 1.48497 * 109.46895 * 239.99455 * 21 19 17 25 25 N 1.46496 * 109.47178 * 119.99294 * 2 1 3 26 26 C 1.34435 * 126.82106 * 34.71636 * 25 2 1 27 27 N 1.30826 * 108.07686 * 179.88750 * 26 25 2 28 28 C 1.33241 * 109.83169 * 0.38316 * 27 26 25 29 29 N 1.30718 * 108.94554 * 359.76435 * 28 27 26 30 30 H 1.09004 * 109.46882 * 183.55718 * 1 2 3 31 31 H 1.08991 * 109.47671 * 303.55802 * 1 2 3 32 32 H 1.09005 * 109.47045 * 63.56396 * 1 2 3 33 33 H 1.08998 * 109.58523 * 6.57569 * 7 6 4 34 34 H 1.08999 * 109.58298 * 246.15525 * 7 6 4 35 35 H 1.08998 * 109.49990 * 294.68483 * 8 7 6 36 36 H 1.09000 * 109.49829 * 174.58125 * 8 7 6 37 37 H 1.09000 * 109.47103 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47726 * 300.06722 * 11 9 8 39 39 H 1.09005 * 109.47339 * 60.06967 * 11 9 8 40 40 H 1.09003 * 109.49760 * 301.41588 * 12 9 8 41 41 H 1.08997 * 109.49784 * 181.31992 * 12 9 8 42 42 H 1.08997 * 109.47070 * 308.25820 * 15 13 6 43 43 H 1.09004 * 109.46891 * 188.26439 * 15 13 6 44 44 H 0.97006 * 119.99684 * 353.96622 * 16 15 13 45 45 H 0.96996 * 119.99447 * 179.97438 * 20 19 17 46 46 H 1.08005 * 125.96003 * 0.03751 * 26 25 2 47 47 H 1.08000 * 125.52770 * 179.79213 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5618 -1.7969 -1.1297 6 7 1.8934 -0.1384 -2.4428 7 6 1.3583 1.2240 -2.5709 8 6 2.3431 2.0658 -3.3885 9 6 2.6165 1.3698 -4.7238 10 1 1.6790 1.2411 -5.2647 11 6 3.5729 2.2247 -5.5577 12 6 3.2491 0.0001 -4.4670 13 6 2.2747 -0.8650 -3.6616 14 1 1.3871 -1.0697 -4.2603 15 6 2.9524 -2.1831 -3.2819 16 7 1.9682 -3.0802 -2.6714 17 6 2.3151 -4.3681 -2.3616 18 1 3.3141 -4.7228 -2.5677 19 6 1.3841 -5.2164 -1.7779 20 7 0.1665 -4.7843 -1.5269 21 14 1.8596 -6.9710 -1.3483 22 1 3.2754 -7.2075 -1.7289 23 1 1.6970 -7.1845 0.1122 24 1 0.9843 -7.9160 -2.0871 25 7 2.0183 -0.6904 1.1962 26 6 1.4529 -1.7484 1.8031 27 7 2.1930 -2.0688 2.8332 28 6 3.2302 -1.2370 2.9209 29 7 3.1669 -0.3749 1.9404 30 1 -0.3633 -1.0257 0.0638 31 1 -0.3634 0.5680 0.8563 32 1 -0.3633 0.4575 -0.9202 33 1 1.2365 1.6633 -1.5808 34 1 0.3949 1.1918 -3.0797 35 1 3.2766 2.1725 -2.8360 36 1 1.9141 3.0507 -3.5728 37 1 3.7674 1.7295 -6.5090 38 1 3.1226 3.2003 -5.7407 39 1 4.5107 2.3532 -5.0172 40 1 4.1741 0.1263 -3.9043 41 1 3.4651 -0.4851 -5.4188 42 1 3.7555 -1.9873 -2.5715 43 1 3.3645 -2.6505 -4.1763 44 1 1.0708 -2.7617 -2.4864 45 1 -0.4841 -5.3772 -1.1194 46 1 0.5472 -2.2482 1.4928 47 1 3.9988 -1.2700 3.6789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691349510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:21 Heat of formation + Delta-G solvation = 111.766786 kcal Electronic energy + Delta-G solvation = -29470.420032 eV Core-core repulsion = 25692.476334 eV Total energy + Delta-G solvation = -3777.943698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74653 -40.31227 -37.53810 -35.41405 -34.05479 -33.61548 -32.01113 -30.95261 -29.88781 -29.68418 -28.21587 -25.55475 -24.95796 -23.36905 -22.86670 -22.27782 -21.46417 -20.76832 -20.05498 -18.99447 -17.26971 -16.85710 -16.56499 -15.55271 -15.25335 -14.91410 -14.88029 -14.62295 -14.34396 -14.05402 -13.89110 -13.67848 -13.52332 -13.28823 -13.02189 -12.84041 -12.48165 -12.27825 -12.22172 -12.04415 -11.96917 -11.75379 -11.61153 -11.29706 -11.04293 -10.94640 -10.75706 -10.72203 -10.49589 -10.27778 -9.87712 -9.67866 -9.62763 -9.53899 -9.33742 -8.77008 -8.35289 -8.17206 -6.55661 -5.61144 -2.80068 1.96595 2.49948 3.10817 3.31059 3.41634 3.54348 3.60615 3.61494 4.53183 4.55370 4.62574 4.70988 4.76391 4.78915 4.81303 4.82916 5.07608 5.16217 5.22841 5.34759 5.43674 5.49472 5.52418 5.53511 5.61462 5.65596 5.66493 5.70284 5.76271 5.83913 5.97553 6.01047 6.04676 6.06849 6.09516 6.34578 6.48181 6.56152 6.58973 6.79562 6.86329 7.13771 7.20561 7.78639 7.85084 8.47276 8.57654 8.75711 9.70017 10.26989 10.62063 11.62929 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.006191 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.213121 B = 4521.503812 C = 6615.823381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.114 0.886 4 C 0.458 3.542 5 O -0.421 6.421 6 N -0.611 5.611 7 C 0.107 3.893 8 C -0.129 4.129 9 C -0.091 4.091 10 H 0.071 0.929 11 C -0.145 4.145 12 C -0.122 4.122 13 C 0.145 3.855 14 H 0.070 0.930 15 C 0.160 3.840 16 N -0.693 5.693 17 C -0.208 4.208 18 H 0.064 0.936 19 C -0.018 4.018 20 N -0.939 5.939 21 Si 0.900 3.100 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.295 1.295 25 N -0.358 5.358 26 C 0.291 3.709 27 N -0.552 5.552 28 C 0.195 3.805 29 N -0.328 5.328 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.017 0.983 44 H 0.379 0.621 45 H 0.249 0.751 46 H 0.215 0.785 47 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 18.906 -2.391 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.132 0.868 4 C 0.240 3.760 5 O -0.286 6.286 6 N -0.350 5.350 7 C -0.016 4.016 8 C -0.168 4.168 9 C -0.110 4.110 10 H 0.090 0.910 11 C -0.203 4.203 12 C -0.161 4.161 13 C 0.042 3.958 14 H 0.088 0.912 15 C 0.032 3.968 16 N -0.336 5.336 17 C -0.340 4.340 18 H 0.082 0.918 19 C -0.212 4.212 20 N -0.590 5.590 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.220 1.220 24 H -0.223 1.223 25 N -0.148 5.148 26 C -0.006 4.006 27 N -0.279 5.279 28 C -0.108 4.108 29 N -0.156 5.156 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.034 0.966 44 H 0.212 0.788 45 H 0.059 0.941 46 H 0.232 0.768 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.386 18.421 -2.242 18.609 hybrid contribution -0.245 -0.880 0.126 0.923 sum 1.141 17.541 -2.116 17.705 Atomic orbital electron populations 1.22188 0.90749 1.05234 1.03953 1.21173 0.96073 0.96849 0.82292 0.86848 1.20325 0.84647 0.87017 0.84046 1.91218 1.36902 1.16797 1.83693 1.47745 1.66550 1.15200 1.05535 1.21719 0.96791 0.82553 1.00552 1.21990 1.00053 0.98380 0.96351 1.21103 0.99185 0.95052 0.95622 0.91043 1.21817 0.99357 0.99342 0.99747 1.21978 0.98932 0.94850 1.00306 1.21494 0.97312 0.92347 0.84647 0.91173 1.20887 0.93769 0.87153 0.94945 1.42245 1.10522 1.09165 1.71671 1.19185 0.96216 0.87368 1.31203 0.91829 1.24547 0.96130 0.98012 1.02509 1.69639 1.03726 1.35113 1.50497 0.86196 0.77216 0.85522 0.77844 1.20941 1.22023 1.22289 1.49996 1.18633 1.24797 1.21380 1.25940 0.98959 0.86927 0.88749 1.70565 1.07261 1.28236 1.21834 1.25845 0.97435 0.90434 0.97120 1.77902 1.03402 1.25997 1.08255 0.89839 0.90930 0.89334 0.90356 0.91459 0.91532 0.91044 0.92653 0.92878 0.92800 0.91565 0.90859 0.94514 0.96554 0.78785 0.94091 0.76829 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.62 37.16 0.32 -1.53 16 2 C 0.14 2.05 2.91 -69.08 -0.20 1.85 16 3 H 0.11 1.37 6.86 -51.93 -0.36 1.01 16 4 C 0.46 8.03 6.35 -10.99 -0.07 7.96 16 5 O -0.42 -9.75 10.07 5.56 0.06 -9.70 16 6 N -0.61 -8.79 2.97 -165.23 -0.49 -9.28 16 7 C 0.11 1.05 5.11 -3.71 -0.02 1.03 16 8 C -0.13 -1.13 5.36 -26.61 -0.14 -1.27 16 9 C -0.09 -0.86 2.68 -90.58 -0.24 -1.10 16 10 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 11 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 12 C -0.12 -1.49 4.65 -26.62 -0.12 -1.62 16 13 C 0.15 2.28 2.94 -67.60 -0.20 2.08 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 15 C 0.16 3.37 4.87 -4.04 -0.02 3.35 16 16 N -0.69 -17.80 3.18 -59.91 -0.19 -17.99 16 17 C -0.21 -6.06 9.72 -15.06 -0.15 -6.21 16 18 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 20 N -0.94 -28.35 13.06 55.49 0.72 -27.62 16 21 Si 0.90 23.75 29.55 -169.99 -5.02 18.72 16 22 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.87 7.11 56.52 0.40 -7.46 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 25 N -0.36 -6.19 3.10 -57.24 -0.18 -6.36 16 26 C 0.29 5.35 11.63 -90.65 -1.05 4.29 16 27 N -0.55 -10.53 11.19 -15.83 -0.18 -10.71 16 28 C 0.19 3.30 13.03 -91.81 -1.20 2.11 16 29 N -0.33 -5.87 12.70 29.29 0.37 -5.49 16 30 H 0.08 1.14 7.04 -51.93 -0.37 0.77 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.83 6.48 -51.93 -0.34 0.50 16 33 H 0.08 0.64 5.17 -51.93 -0.27 0.37 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.87 6.42 -51.93 -0.33 0.54 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.13 6.91 -40.82 -0.28 9.85 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.22 3.69 7.22 -52.48 -0.38 3.31 16 47 H 0.21 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -36.09 367.73 -9.58 -45.67 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.36 Total: 7.73 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -2.85 Total: 9.49 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: 0.06 Total: -77.45 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.70 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.72 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.09 -9.58 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691349510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.433 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds