Wall clock time and date at job start Fri Apr 10 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46665 * 2 1 4 4 C 1.50700 * 109.47487 * 239.99896 * 2 1 3 5 5 O 1.21276 * 120.00085 * 250.70207 * 4 2 1 6 6 N 1.34777 * 119.99932 * 70.70262 * 4 2 1 7 7 C 1.46930 * 120.63228 * 5.19087 * 6 4 2 8 8 C 1.53189 * 108.77747 * 126.36489 * 7 6 4 9 9 C 1.53042 * 109.30845 * 54.63644 * 8 7 6 10 10 H 1.08999 * 109.45111 * 58.64968 * 9 8 7 11 11 C 1.53003 * 109.45645 * 178.61129 * 9 8 7 12 12 C 1.53038 * 109.54021 * 298.63150 * 9 8 7 13 13 C 1.46924 * 120.63155 * 185.16098 * 6 4 2 14 14 H 1.09004 * 109.70451 * 113.77451 * 13 6 4 15 15 C 1.52999 * 109.58368 * 353.42369 * 13 6 4 16 16 N 1.46495 * 109.47524 * 68.26344 * 15 13 6 17 17 C 1.36938 * 120.00181 * 173.97904 * 16 15 13 18 18 H 1.07997 * 120.00317 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99703 * 179.72564 * 17 16 15 20 20 N 1.31622 * 120.00185 * 0.26227 * 19 17 16 21 21 Si 1.86800 * 119.99782 * 180.27324 * 19 17 16 22 22 H 1.48503 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47265 * 119.99475 * 21 19 17 24 24 H 1.48497 * 109.46895 * 239.99455 * 21 19 17 25 25 N 1.46496 * 109.47178 * 119.99294 * 2 1 3 26 26 C 1.34435 * 126.82106 * 34.71636 * 25 2 1 27 27 N 1.30826 * 108.07686 * 179.88750 * 26 25 2 28 28 C 1.33241 * 109.83169 * 0.38316 * 27 26 25 29 29 N 1.30718 * 108.94554 * 359.76435 * 28 27 26 30 30 H 1.09004 * 109.46882 * 183.55718 * 1 2 3 31 31 H 1.08991 * 109.47671 * 303.55802 * 1 2 3 32 32 H 1.09005 * 109.47045 * 63.56396 * 1 2 3 33 33 H 1.08998 * 109.58523 * 6.57569 * 7 6 4 34 34 H 1.08999 * 109.58298 * 246.15525 * 7 6 4 35 35 H 1.08998 * 109.49990 * 294.68483 * 8 7 6 36 36 H 1.09000 * 109.49829 * 174.58125 * 8 7 6 37 37 H 1.09000 * 109.47103 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47726 * 300.06722 * 11 9 8 39 39 H 1.09005 * 109.47339 * 60.06967 * 11 9 8 40 40 H 1.09003 * 109.49760 * 301.41588 * 12 9 8 41 41 H 1.08997 * 109.49784 * 181.31992 * 12 9 8 42 42 H 1.08997 * 109.47070 * 308.25820 * 15 13 6 43 43 H 1.09004 * 109.46891 * 188.26439 * 15 13 6 44 44 H 0.97006 * 119.99684 * 353.96622 * 16 15 13 45 45 H 0.96996 * 119.99447 * 179.97438 * 20 19 17 46 46 H 1.08005 * 125.96003 * 0.03751 * 26 25 2 47 47 H 1.08000 * 125.52770 * 179.79213 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5618 -1.7969 -1.1297 6 7 1.8934 -0.1384 -2.4428 7 6 1.3583 1.2240 -2.5709 8 6 2.3431 2.0658 -3.3885 9 6 2.6165 1.3698 -4.7238 10 1 1.6790 1.2411 -5.2647 11 6 3.5729 2.2247 -5.5577 12 6 3.2491 0.0001 -4.4670 13 6 2.2747 -0.8650 -3.6616 14 1 1.3871 -1.0697 -4.2603 15 6 2.9524 -2.1831 -3.2819 16 7 1.9682 -3.0802 -2.6714 17 6 2.3151 -4.3681 -2.3616 18 1 3.3141 -4.7228 -2.5677 19 6 1.3841 -5.2164 -1.7779 20 7 0.1665 -4.7843 -1.5269 21 14 1.8596 -6.9710 -1.3483 22 1 3.2754 -7.2075 -1.7289 23 1 1.6970 -7.1845 0.1122 24 1 0.9843 -7.9160 -2.0871 25 7 2.0183 -0.6904 1.1962 26 6 1.4529 -1.7484 1.8031 27 7 2.1930 -2.0688 2.8332 28 6 3.2302 -1.2370 2.9209 29 7 3.1669 -0.3749 1.9404 30 1 -0.3633 -1.0257 0.0638 31 1 -0.3634 0.5680 0.8563 32 1 -0.3633 0.4575 -0.9202 33 1 1.2365 1.6633 -1.5808 34 1 0.3949 1.1918 -3.0797 35 1 3.2766 2.1725 -2.8360 36 1 1.9141 3.0507 -3.5728 37 1 3.7674 1.7295 -6.5090 38 1 3.1226 3.2003 -5.7407 39 1 4.5107 2.3532 -5.0172 40 1 4.1741 0.1263 -3.9043 41 1 3.4651 -0.4851 -5.4188 42 1 3.7555 -1.9873 -2.5715 43 1 3.3645 -2.6505 -4.1763 44 1 1.0708 -2.7617 -2.4864 45 1 -0.4841 -5.3772 -1.1194 46 1 0.5472 -2.2482 1.4928 47 1 3.9988 -1.2700 3.6789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691349510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:20 Heat of formation + Delta-G solvation = 89.366667 kcal Electronic energy + Delta-G solvation = -29471.391374 eV Core-core repulsion = 25692.476334 eV Total energy + Delta-G solvation = -3778.915040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.08680 -41.57689 -38.65632 -36.90763 -35.63985 -34.76929 -33.65662 -32.31615 -31.58807 -30.83072 -29.18205 -27.17522 -26.17190 -24.59657 -24.20231 -23.75711 -22.79670 -22.13577 -21.00837 -20.25361 -19.16279 -18.13528 -17.95834 -16.80864 -16.73043 -16.36966 -16.24915 -15.86283 -15.58995 -15.37551 -15.21726 -14.91588 -14.84577 -14.60428 -14.51102 -14.02704 -13.81382 -13.46503 -13.38550 -13.20557 -13.12304 -12.85294 -12.82538 -12.67637 -12.56418 -12.45138 -12.13329 -12.05334 -11.88760 -11.68743 -11.29500 -11.21217 -11.07970 -11.02493 -10.87281 -10.71419 -9.79869 -9.49914 -8.61785 -7.86524 -5.03148 0.59421 1.26363 1.40129 1.43767 1.50480 1.80969 2.01281 2.15119 2.58801 3.40830 3.47568 3.48440 3.49707 3.72490 3.74448 3.86384 3.91228 4.00754 4.09419 4.28436 4.32061 4.33965 4.46803 4.53293 4.58810 4.62400 4.71125 4.79370 4.83332 4.92701 4.95469 5.00670 5.05484 5.12904 5.15142 5.23006 5.29450 5.33444 5.43253 5.50576 5.50895 5.58889 5.76038 5.83851 6.35874 6.56559 7.10815 7.41768 7.46339 8.20327 8.45942 9.37354 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.006191 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.213121 B = 4521.503812 C = 6615.823381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.144 0.856 4 C 0.458 3.542 5 O -0.492 6.492 6 N -0.605 5.605 7 C 0.097 3.903 8 C -0.124 4.124 9 C -0.087 4.087 10 H 0.081 0.919 11 C -0.141 4.141 12 C -0.113 4.113 13 C 0.152 3.848 14 H 0.070 0.930 15 C 0.165 3.835 16 N -0.696 5.696 17 C -0.213 4.213 18 H 0.050 0.950 19 C -0.069 4.069 20 N -0.960 5.960 21 Si 0.953 3.047 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.289 1.289 25 N -0.357 5.357 26 C 0.278 3.722 27 N -0.579 5.579 28 C 0.191 3.809 29 N -0.343 5.343 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.009 0.991 43 H 0.010 0.990 44 H 0.371 0.629 45 H 0.246 0.754 46 H 0.216 0.784 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 21.929 -3.100 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.162 0.838 4 C 0.242 3.758 5 O -0.363 6.363 6 N -0.342 5.342 7 C -0.024 4.024 8 C -0.162 4.162 9 C -0.105 4.105 10 H 0.099 0.901 11 C -0.199 4.199 12 C -0.152 4.152 13 C 0.049 3.951 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.337 5.337 17 C -0.346 4.346 18 H 0.068 0.932 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.785 3.215 22 H -0.206 1.206 23 H -0.228 1.228 24 H -0.216 1.216 25 N -0.146 5.146 26 C -0.019 4.019 27 N -0.307 5.307 28 C -0.111 4.111 29 N -0.171 5.171 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.203 0.797 45 H 0.055 0.945 46 H 0.232 0.768 47 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.800 21.523 -3.006 21.747 hybrid contribution 0.010 -1.713 0.316 1.741 sum 0.810 19.811 -2.691 20.009 Atomic orbital electron populations 1.22202 0.88227 1.04278 1.06519 1.21485 0.97871 0.97234 0.79739 0.83825 1.21017 0.82764 0.86405 0.85603 1.91202 1.40292 1.19871 1.84914 1.47885 1.65360 1.16811 1.04142 1.22157 0.97828 0.79796 1.02617 1.21986 0.99486 0.99501 0.95249 1.21097 0.99610 0.93173 0.96638 0.90096 1.21777 0.98872 0.99921 0.99308 1.21918 0.97544 0.96305 0.99459 1.21311 0.97618 0.90670 0.85523 0.91170 1.20851 0.92838 0.89310 0.93190 1.42206 1.10827 1.08623 1.72033 1.19365 0.95520 0.89099 1.30601 0.93170 1.25133 0.96449 1.01103 1.03425 1.69743 1.04194 1.35832 1.51507 0.85346 0.77086 0.82119 0.76943 1.20585 1.22765 1.21571 1.50172 1.18197 1.24541 1.21739 1.25997 0.99288 0.87525 0.89108 1.70546 1.08261 1.29236 1.22638 1.26574 0.97505 0.89508 0.97520 1.77835 1.03830 1.26743 1.08711 0.92583 0.88242 0.86760 0.88074 0.89355 0.92479 0.87696 0.92675 0.91006 0.93294 0.92897 0.90483 0.97289 0.97264 0.79651 0.94489 0.76818 0.73762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.62 71.98 0.62 -2.54 16 2 C 0.14 3.87 2.91 44.25 0.13 3.99 16 3 H 0.14 2.99 6.86 -2.38 -0.02 2.97 16 4 C 0.46 15.97 6.35 87.66 0.56 16.53 16 5 O -0.49 -23.65 10.07 -3.02 -0.03 -23.68 16 6 N -0.60 -16.54 2.97 -795.05 -2.36 -18.90 16 7 C 0.10 1.52 5.11 86.36 0.44 1.96 16 8 C -0.12 -1.64 5.36 30.67 0.16 -1.48 16 9 C -0.09 -1.35 2.68 -10.77 -0.03 -1.38 16 10 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 11 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16 12 C -0.11 -2.64 4.65 30.67 0.14 -2.50 16 13 C 0.15 4.73 2.94 44.97 0.13 4.86 16 14 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 15 C 0.16 7.23 4.87 86.38 0.42 7.65 16 16 N -0.70 -37.08 3.18 -343.46 -1.09 -38.17 16 17 C -0.21 -12.89 9.72 84.03 0.82 -12.07 16 18 H 0.05 3.09 7.83 -2.91 -0.02 3.07 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.96 -59.45 13.06 21.65 0.28 -59.17 16 21 Si 0.95 50.11 29.55 68.60 2.03 52.14 16 22 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 23 H -0.30 -15.98 7.11 99.48 0.71 -15.28 16 24 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 25 N -0.36 -12.22 3.10 -335.01 -1.04 -13.26 16 26 C 0.28 10.42 11.63 180.36 2.10 12.52 16 27 N -0.58 -22.37 11.19 -203.99 -2.28 -24.65 16 28 C 0.19 6.42 13.03 180.76 2.36 8.77 16 29 N -0.34 -12.09 12.70 -61.24 -0.78 -12.87 16 30 H 0.06 1.50 7.04 -2.38 -0.02 1.49 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.73 6.48 -2.38 -0.02 1.72 16 33 H 0.10 1.15 5.17 -2.39 -0.01 1.14 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.01 0.47 6.42 -2.39 -0.02 0.45 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.37 20.52 6.91 -92.70 -0.64 19.88 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.22 7.77 7.22 -2.91 -0.02 7.75 16 47 H 0.25 5.87 8.06 -2.91 -0.02 5.85 16 Total: -1.00 -82.64 367.73 4.03 -78.61 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.33 Total: 28.54 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 8.98 Total: 31.42 kcal Atomic # 7 Polarization: -159.74 SS G_CDS: -7.27 Total: -167.01 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.03 Total: -23.68 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.03 Total: 52.14 kcal Total: -82.64 4.03 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691349510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.974 kcal (2) G-P(sol) polarization free energy of solvation -82.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds