Wall clock time and date at job start Fri Apr 10 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46929 * 2 1 4 4 C 1.34818 * 126.59288 * 125.27596 * 3 2 1 5 5 C 1.36604 * 106.83800 * 180.10800 * 4 3 2 6 6 C 1.47526 * 125.76863 * 179.89685 * 5 4 3 7 7 O 1.21595 * 119.99572 * 352.68152 * 6 5 4 8 8 N 1.34770 * 119.99801 * 172.68037 * 6 5 4 9 9 C 1.46931 * 120.63211 * 352.70102 * 8 6 5 10 10 C 1.53196 * 108.77762 * 233.63266 * 9 8 6 11 11 C 1.53036 * 109.31113 * 305.36583 * 10 9 8 12 12 C 1.53002 * 109.46249 * 181.38615 * 11 10 9 13 13 H 1.08997 * 109.46779 * 299.97392 * 12 11 10 14 14 C 1.52997 * 109.46699 * 59.96825 * 12 11 10 15 15 N 1.46494 * 109.47394 * 179.97438 * 12 11 10 16 16 C 1.36941 * 120.00174 * 155.00076 * 15 12 11 17 17 H 1.07997 * 119.99709 * 359.97438 * 16 15 12 18 18 C 1.38812 * 120.00215 * 179.97438 * 16 15 12 19 19 N 1.31613 * 120.00037 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99720 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47067 * 89.99781 * 20 18 16 22 22 H 1.48506 * 109.46749 * 209.99818 * 20 18 16 23 23 H 1.48498 * 109.47109 * 329.99586 * 20 18 16 24 24 C 1.53040 * 109.52945 * 61.37008 * 11 10 9 25 25 C 1.46924 * 120.62949 * 172.72714 * 8 6 5 26 26 N 1.34397 * 108.45834 * 359.63435 * 5 4 3 27 27 N 1.28758 * 109.52634 * 0.22690 * 26 5 4 28 28 H 1.09005 * 109.47408 * 60.00057 * 1 2 3 29 29 H 1.09005 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47378 * 299.99825 * 1 2 3 31 31 H 1.08999 * 109.46680 * 240.00210 * 2 1 3 32 32 H 1.08993 * 109.47248 * 120.00314 * 2 1 3 33 33 H 1.07995 * 126.58425 * 359.96402 * 4 3 2 34 34 H 1.09005 * 109.58544 * 113.84502 * 9 8 6 35 35 H 1.08999 * 109.70117 * 353.49275 * 9 8 6 36 36 H 1.08999 * 109.49575 * 185.41618 * 10 9 8 37 37 H 1.08993 * 109.52372 * 65.33198 * 10 9 8 38 38 H 1.08999 * 109.46093 * 301.36149 * 11 10 9 39 39 H 1.08997 * 109.47043 * 60.00728 * 14 12 11 40 40 H 1.08995 * 109.47902 * 300.00105 * 14 12 11 41 41 H 1.09003 * 109.46816 * 179.97438 * 14 12 11 42 42 H 0.97005 * 119.99902 * 334.99199 * 15 12 11 43 43 H 0.96999 * 119.99601 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.49520 * 58.57806 * 24 11 10 45 45 H 1.08999 * 109.50057 * 178.67590 * 24 11 10 46 46 H 1.08997 * 109.58937 * 246.15379 * 25 8 6 47 47 H 1.08999 * 109.58769 * 6.44140 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9306 0.8837 5 6 3.0507 3.2322 0.5082 6 6 3.9084 4.2189 1.1917 7 8 4.4308 3.9384 2.2533 8 7 4.1129 5.4312 0.6395 9 6 3.6226 5.7301 -0.7130 10 6 4.7903 6.2507 -1.5570 11 6 5.4376 7.4411 -0.8457 12 6 6.5826 7.9856 -1.7021 13 1 7.3272 7.2039 -1.8526 14 6 6.0355 8.4365 -3.0579 15 7 7.2021 9.1255 -1.0217 16 6 8.5035 9.4578 -1.2888 17 1 9.0732 8.8791 -2.0007 18 6 9.0902 10.5382 -0.6445 19 7 10.3412 10.8572 -0.9008 20 14 8.1048 11.5387 0.5874 21 1 8.2716 10.9572 1.9437 22 1 8.5909 12.9419 0.5872 23 1 6.6686 11.5122 0.2107 24 6 5.9850 6.9907 0.5107 25 6 4.8308 6.4788 1.3782 26 7 2.3141 3.4604 -0.5926 27 7 1.6885 2.3845 -0.9224 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3338 1.4371 1.7279 34 1 2.8431 6.4901 -0.6594 35 1 3.2194 4.8245 -1.1662 36 1 4.4215 6.5666 -2.5328 37 1 5.5281 5.4589 -1.6858 38 1 4.6932 8.2229 -0.6952 39 1 5.2909 9.2182 -2.9074 40 1 5.5747 7.5884 -3.5641 41 1 6.8511 8.8249 -3.6679 42 1 6.6903 9.6451 -0.3821 43 1 10.7510 11.6124 -0.4509 44 1 6.7113 6.1916 0.3626 45 1 6.4667 7.8334 1.0066 46 1 4.1500 7.2999 1.6023 47 1 5.2244 6.0664 2.3073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691687329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:47 Heat of formation + Delta-G solvation = 81.596562 kcal Electronic energy + Delta-G solvation = -27431.413488 eV Core-core repulsion = 23652.161511 eV Total energy + Delta-G solvation = -3779.251977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.57645 -39.93919 -37.90172 -35.95322 -35.43716 -32.83974 -31.75926 -31.59574 -30.89571 -30.15882 -28.64651 -25.74223 -25.16631 -23.78505 -23.37546 -22.39623 -22.10353 -20.91748 -19.85123 -19.36485 -17.90656 -17.41745 -16.65122 -16.51029 -16.11154 -15.31164 -15.09343 -14.85101 -14.63704 -14.26024 -14.10613 -13.79600 -13.56389 -13.41188 -13.27424 -12.95560 -12.81480 -12.56541 -12.51170 -12.34282 -12.23902 -11.94349 -11.77818 -11.32650 -11.20940 -10.98025 -10.87242 -10.76567 -10.67696 -10.33091 -10.17529 -10.13466 -9.85004 -9.68084 -9.58940 -9.48931 -8.87055 -8.53844 -7.19401 -5.71183 -3.05542 0.80971 1.44919 1.63183 2.92912 3.15164 3.41542 3.44136 3.49328 3.80776 3.89586 4.20465 4.33132 4.47258 4.61527 4.64167 4.82891 4.87574 4.97998 5.08043 5.10156 5.14086 5.26215 5.35534 5.45374 5.46312 5.54969 5.66366 5.74606 5.81463 5.94120 5.97120 6.07545 6.10555 6.19270 6.21014 6.31920 6.41887 6.46667 6.53630 6.66276 6.77361 6.93661 7.11736 7.35829 7.63429 8.06380 8.08358 8.48332 9.27564 10.00284 10.20820 11.47515 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.002602 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.822171 B =10756.530067 C =11255.026849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.360 5.360 4 C 0.092 3.908 5 C -0.094 4.094 6 C 0.601 3.399 7 O -0.545 6.545 8 N -0.590 5.590 9 C 0.085 3.915 10 C -0.127 4.127 11 C -0.094 4.094 12 C 0.183 3.817 13 H 0.053 0.947 14 C -0.166 4.166 15 N -0.747 5.747 16 C -0.236 4.236 17 H 0.089 0.911 18 C 0.002 3.998 19 N -0.936 5.936 20 Si 0.882 3.118 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.277 1.277 24 C -0.122 4.122 25 C 0.110 3.890 26 N -0.203 5.203 27 N -0.066 5.066 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.204 0.796 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.360 0.640 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 -23.459 2.432 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.146 5.146 4 C -0.065 4.065 5 C -0.233 4.233 6 C 0.387 3.613 7 O -0.423 6.423 8 N -0.322 5.322 9 C -0.038 4.038 10 C -0.165 4.165 11 C -0.114 4.114 12 C 0.074 3.926 13 H 0.071 0.929 14 C -0.226 4.226 15 N -0.390 5.390 16 C -0.366 4.366 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.585 5.585 20 Si 0.713 3.287 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.160 4.160 25 C -0.012 4.012 26 N -0.076 5.076 27 N -0.046 5.046 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.221 0.779 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.192 0.808 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.088 -23.308 1.661 32.154 hybrid contribution -0.033 0.583 1.643 1.743 sum -22.121 -22.725 3.304 31.886 Atomic orbital electron populations 1.22092 0.92672 1.03745 1.04088 1.22057 0.96926 0.76149 1.05219 1.50599 1.31503 1.12336 1.20139 1.23385 0.93053 0.94015 0.96015 1.21504 1.07594 0.95109 0.99122 1.16811 0.79649 0.80866 0.83979 1.90793 1.50761 1.77996 1.22705 1.47925 1.55227 1.11810 1.17197 1.22545 0.96243 1.03857 0.81130 1.22005 0.97503 0.98117 0.98900 1.21449 0.98064 0.96674 0.95207 1.20190 0.92214 0.90013 0.90212 0.92886 1.22460 1.00834 0.99811 0.99515 1.42791 1.12061 1.33735 1.50429 1.19067 0.86532 1.10586 1.20459 0.89344 1.24663 0.95937 0.98713 1.00063 1.69700 1.11906 1.30485 1.46366 0.86575 0.79724 0.80177 0.82225 1.21093 1.21929 1.20333 1.21887 0.96668 1.01810 0.95672 1.21788 0.94178 0.89276 0.95943 1.74451 1.05324 1.17626 1.10208 1.81991 1.20050 0.90544 1.11985 0.90650 0.89835 0.91688 0.88231 0.87633 0.77879 0.91602 0.85875 0.90239 0.91732 0.91503 0.93722 0.93941 0.92625 0.80766 0.93187 0.91487 0.89706 0.91470 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.48 10.12 37.16 0.38 -0.10 16 2 C 0.12 0.34 7.26 -4.04 -0.03 0.31 16 3 N -0.36 -2.67 3.69 -61.07 -0.23 -2.90 16 4 C 0.09 0.77 11.28 -16.83 -0.19 0.58 16 5 C -0.09 -1.11 6.70 -83.55 -0.56 -1.67 16 6 C 0.60 8.45 7.67 -12.48 -0.10 8.35 16 7 O -0.55 -8.84 16.30 5.28 0.09 -8.75 16 8 N -0.59 -8.06 2.97 -173.99 -0.52 -8.58 16 9 C 0.09 1.06 6.08 -3.71 -0.02 1.03 16 10 C -0.13 -1.65 5.04 -26.61 -0.13 -1.79 16 11 C -0.09 -1.45 1.79 -90.58 -0.16 -1.62 16 12 C 0.18 3.46 2.47 -67.93 -0.17 3.29 16 13 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 14 C -0.17 -2.91 9.14 37.16 0.34 -2.57 16 15 N -0.75 -17.40 4.21 -53.43 -0.22 -17.63 16 16 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 19 N -0.94 -29.66 13.97 55.49 0.78 -28.89 16 20 Si 0.88 22.27 27.74 -169.99 -4.71 17.55 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 24 C -0.12 -1.92 5.22 -26.61 -0.14 -2.06 16 25 C 0.11 1.54 6.44 -3.71 -0.02 1.52 16 26 N -0.20 -2.43 8.79 32.85 0.29 -2.14 16 27 N -0.07 -0.70 13.65 60.35 0.82 0.12 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.11 0.03 8.08 -51.93 -0.42 -0.39 16 33 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.12 1.52 4.13 -77.65 -0.32 1.19 16 36 H 0.08 0.96 6.36 -51.93 -0.33 0.63 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.62 6.40 -51.93 -0.33 0.28 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.36 8.26 5.44 -40.82 -0.22 8.04 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.48 7.41 -51.93 -0.38 1.09 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -35.05 374.05 -6.59 -41.64 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.46 Total: 5.50 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.06 Total: -1.56 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.92 Total: -60.02 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.05 -6.59 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691687329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.235 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds