Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46929 * 2 1 4 4 C 1.34818 * 126.59288 * 125.27596 * 3 2 1 5 5 C 1.36604 * 106.83800 * 180.10800 * 4 3 2 6 6 C 1.47526 * 125.76863 * 179.89685 * 5 4 3 7 7 O 1.21595 * 119.99572 * 352.68152 * 6 5 4 8 8 N 1.34770 * 119.99801 * 172.68037 * 6 5 4 9 9 C 1.46931 * 120.63211 * 352.70102 * 8 6 5 10 10 C 1.53196 * 108.77762 * 233.63266 * 9 8 6 11 11 C 1.53036 * 109.31113 * 305.36583 * 10 9 8 12 12 C 1.53002 * 109.46249 * 181.38615 * 11 10 9 13 13 H 1.08997 * 109.46779 * 299.97392 * 12 11 10 14 14 C 1.52997 * 109.46699 * 59.96825 * 12 11 10 15 15 N 1.46494 * 109.47394 * 179.97438 * 12 11 10 16 16 C 1.36941 * 120.00174 * 155.00076 * 15 12 11 17 17 H 1.07997 * 119.99709 * 359.97438 * 16 15 12 18 18 C 1.38812 * 120.00215 * 179.97438 * 16 15 12 19 19 N 1.31613 * 120.00037 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99720 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47067 * 89.99781 * 20 18 16 22 22 H 1.48506 * 109.46749 * 209.99818 * 20 18 16 23 23 H 1.48498 * 109.47109 * 329.99586 * 20 18 16 24 24 C 1.53040 * 109.52945 * 61.37008 * 11 10 9 25 25 C 1.46924 * 120.62949 * 172.72714 * 8 6 5 26 26 N 1.34397 * 108.45834 * 359.63435 * 5 4 3 27 27 N 1.28758 * 109.52634 * 0.22690 * 26 5 4 28 28 H 1.09005 * 109.47408 * 60.00057 * 1 2 3 29 29 H 1.09005 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47378 * 299.99825 * 1 2 3 31 31 H 1.08999 * 109.46680 * 240.00210 * 2 1 3 32 32 H 1.08993 * 109.47248 * 120.00314 * 2 1 3 33 33 H 1.07995 * 126.58425 * 359.96402 * 4 3 2 34 34 H 1.09005 * 109.58544 * 113.84502 * 9 8 6 35 35 H 1.08999 * 109.70117 * 353.49275 * 9 8 6 36 36 H 1.08999 * 109.49575 * 185.41618 * 10 9 8 37 37 H 1.08993 * 109.52372 * 65.33198 * 10 9 8 38 38 H 1.08999 * 109.46093 * 301.36149 * 11 10 9 39 39 H 1.08997 * 109.47043 * 60.00728 * 14 12 11 40 40 H 1.08995 * 109.47902 * 300.00105 * 14 12 11 41 41 H 1.09003 * 109.46816 * 179.97438 * 14 12 11 42 42 H 0.97005 * 119.99902 * 334.99199 * 15 12 11 43 43 H 0.96999 * 119.99601 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.49520 * 58.57806 * 24 11 10 45 45 H 1.08999 * 109.50057 * 178.67590 * 24 11 10 46 46 H 1.08997 * 109.58937 * 246.15379 * 25 8 6 47 47 H 1.08999 * 109.58769 * 6.44140 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9306 0.8837 5 6 3.0507 3.2322 0.5082 6 6 3.9084 4.2189 1.1917 7 8 4.4308 3.9384 2.2533 8 7 4.1129 5.4312 0.6395 9 6 3.6226 5.7301 -0.7130 10 6 4.7903 6.2507 -1.5570 11 6 5.4376 7.4411 -0.8457 12 6 6.5826 7.9856 -1.7021 13 1 7.3272 7.2039 -1.8526 14 6 6.0355 8.4365 -3.0579 15 7 7.2021 9.1255 -1.0217 16 6 8.5035 9.4578 -1.2888 17 1 9.0732 8.8791 -2.0007 18 6 9.0902 10.5382 -0.6445 19 7 10.3412 10.8572 -0.9008 20 14 8.1048 11.5387 0.5874 21 1 8.2716 10.9572 1.9437 22 1 8.5909 12.9419 0.5872 23 1 6.6686 11.5122 0.2107 24 6 5.9850 6.9907 0.5107 25 6 4.8308 6.4788 1.3782 26 7 2.3141 3.4604 -0.5926 27 7 1.6885 2.3845 -0.9224 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3338 1.4371 1.7279 34 1 2.8431 6.4901 -0.6594 35 1 3.2194 4.8245 -1.1662 36 1 4.4215 6.5666 -2.5328 37 1 5.5281 5.4589 -1.6858 38 1 4.6932 8.2229 -0.6952 39 1 5.2909 9.2182 -2.9074 40 1 5.5747 7.5884 -3.5641 41 1 6.8511 8.8249 -3.6679 42 1 6.6903 9.6451 -0.3821 43 1 10.7510 11.6124 -0.4509 44 1 6.7113 6.1916 0.3626 45 1 6.4667 7.8334 1.0066 46 1 4.1500 7.2999 1.6023 47 1 5.2244 6.0664 2.3073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691687329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = 57.610128 kcal Electronic energy + Delta-G solvation = -27432.453618 eV Core-core repulsion = 23652.161511 eV Total energy + Delta-G solvation = -3780.292107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.29701 -41.02285 -39.18442 -37.02053 -36.35821 -34.60762 -32.88929 -32.48912 -32.26356 -30.95731 -30.25960 -26.93128 -25.67517 -25.46612 -24.40540 -23.65521 -22.72139 -22.09405 -21.34613 -20.42535 -19.53707 -18.53492 -17.51716 -17.24097 -17.01487 -16.71823 -16.15659 -15.95891 -15.81076 -15.29332 -15.13919 -15.09747 -14.85691 -14.55165 -14.43308 -14.21459 -13.86942 -13.76942 -13.51070 -13.31210 -13.12023 -12.97644 -12.93177 -12.84686 -12.44802 -12.33095 -12.20404 -12.09730 -11.91166 -11.78884 -11.50175 -11.37791 -11.30010 -11.25562 -10.91652 -10.78272 -10.36846 -9.63007 -9.25343 -7.98559 -5.30194 0.15690 0.57651 1.12627 1.39107 1.42701 1.49687 1.94219 2.18776 2.51369 3.09384 3.33171 3.37099 3.60140 3.71748 3.81313 3.91907 3.96036 4.01233 4.12584 4.17889 4.29890 4.30852 4.39346 4.41529 4.56431 4.62111 4.63960 4.76345 4.78609 4.84982 4.91039 4.93143 5.02152 5.09220 5.12360 5.18863 5.23531 5.25838 5.33973 5.48549 5.50776 5.64816 5.66769 5.82123 6.25998 6.33277 6.83116 7.08597 7.12891 7.90340 8.09831 9.23477 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.002602 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.822171 B =10756.530067 C =11255.026849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.346 5.346 4 C 0.110 3.890 5 C -0.123 4.123 6 C 0.599 3.401 7 O -0.575 6.575 8 N -0.594 5.594 9 C 0.090 3.910 10 C -0.119 4.119 11 C -0.083 4.083 12 C 0.176 3.824 13 H 0.033 0.967 14 C -0.158 4.158 15 N -0.748 5.748 16 C -0.219 4.219 17 H 0.052 0.948 18 C -0.070 4.070 19 N -0.988 5.988 20 Si 0.953 3.047 21 H -0.279 1.279 22 H -0.300 1.300 23 H -0.249 1.249 24 C -0.117 4.117 25 C 0.117 3.883 26 N -0.219 5.219 27 N -0.086 5.086 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.235 0.765 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.365 0.635 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.979 -25.199 3.033 35.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.132 5.132 4 C -0.048 4.048 5 C -0.263 4.263 6 C 0.386 3.614 7 O -0.454 6.454 8 N -0.325 5.325 9 C -0.032 4.032 10 C -0.157 4.157 11 C -0.103 4.103 12 C 0.069 3.931 13 H 0.051 0.949 14 C -0.217 4.217 15 N -0.391 5.391 16 C -0.350 4.350 17 H 0.070 0.930 18 C -0.260 4.260 19 N -0.639 5.639 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.227 1.227 23 H -0.174 1.174 24 C -0.156 4.156 25 C -0.006 4.006 26 N -0.092 5.092 27 N -0.066 5.066 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.158 0.842 33 H 0.251 0.749 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.198 0.802 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.370 -25.103 2.218 35.759 hybrid contribution 0.958 0.908 1.387 1.915 sum -24.413 -24.195 3.605 34.559 Atomic orbital electron populations 1.22081 0.92590 1.04940 1.02676 1.22578 0.96999 0.73976 1.07690 1.50927 1.30336 1.13182 1.18740 1.23824 0.91975 0.92962 0.96083 1.21371 1.08769 0.96016 1.00112 1.17119 0.79445 0.81093 0.83711 1.90766 1.52094 1.78580 1.23981 1.48004 1.55067 1.11771 1.17660 1.22588 0.95892 1.04476 0.80252 1.21954 0.97463 0.96687 0.99612 1.21336 0.96742 0.97844 0.94340 1.20415 0.92929 0.88170 0.91592 0.94897 1.22330 1.00091 1.01314 0.98003 1.42771 1.10478 1.34940 1.50937 1.18989 0.88193 1.09357 1.18501 0.93015 1.25493 0.97121 1.00537 1.02898 1.69891 1.14141 1.31483 1.48390 0.85425 0.79462 0.77576 0.79435 1.20489 1.22693 1.17374 1.21788 0.97018 1.00528 0.96254 1.21658 0.93855 0.89900 0.95148 1.74362 1.05768 1.18552 1.10540 1.81906 1.20513 0.91080 1.13100 0.92524 0.87340 0.92587 0.86780 0.84167 0.74882 0.90352 0.85366 0.88442 0.92599 0.90258 0.92836 0.90489 0.95444 0.80191 0.93585 0.93289 0.91504 0.89772 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.12 71.98 0.73 0.20 16 2 C 0.11 0.27 7.26 86.38 0.63 0.90 16 3 N -0.35 -4.27 3.69 -347.11 -1.28 -5.55 16 4 C 0.11 1.56 11.28 83.85 0.95 2.51 16 5 C -0.12 -2.71 6.70 40.82 0.27 -2.44 16 6 C 0.60 16.26 7.67 86.69 0.67 16.92 16 7 O -0.57 -18.29 16.30 -4.01 -0.07 -18.36 16 8 N -0.59 -15.48 2.97 -822.65 -2.44 -17.93 16 9 C 0.09 2.05 6.08 86.36 0.52 2.57 16 10 C -0.12 -2.85 5.04 30.67 0.15 -2.69 16 11 C -0.08 -2.43 1.79 -10.77 -0.02 -2.45 16 12 C 0.18 6.59 2.47 44.99 0.11 6.70 16 13 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 14 C -0.16 -5.28 9.14 71.98 0.66 -4.63 16 15 N -0.75 -34.63 4.21 -322.96 -1.36 -35.99 16 16 C -0.22 -12.62 10.41 84.03 0.87 -11.75 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 18 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 19 N -0.99 -64.66 13.97 21.65 0.30 -64.36 16 20 Si 0.95 46.24 27.74 68.60 1.90 48.14 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 23 H -0.25 -10.81 6.52 99.48 0.65 -10.17 16 24 C -0.12 -3.65 5.22 30.67 0.16 -3.49 16 25 C 0.12 3.15 6.44 86.36 0.56 3.70 16 26 N -0.22 -4.94 8.79 -49.99 -0.44 -5.38 16 27 N -0.09 -1.70 13.65 37.02 0.51 -1.19 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 30 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.14 -0.55 8.08 -2.39 -0.02 -0.57 16 33 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.13 2.92 4.13 -35.67 -0.15 2.78 16 36 H 0.10 2.01 6.36 -2.39 -0.02 2.00 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.03 6.40 -2.39 -0.02 2.02 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.36 16.17 5.44 -92.70 -0.50 15.67 16 43 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.31 7.41 -2.39 -0.02 2.29 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.08 2.38 7.00 -2.39 -0.02 2.36 16 Total: -1.00 -79.11 374.05 4.12 -74.99 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.28 Total: 23.26 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.73 Total: 2.35 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -4.72 Total: -130.39 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.07 Total: -18.36 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -79.11 4.12 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691687329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.601 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds