Wall clock time and date at job start Fri Apr 10 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 N 1.46499 * 109.47462 * 181.15395 * 3 2 1 5 5 C 1.34777 * 119.99715 * 84.64583 * 4 3 2 6 6 O 1.21280 * 120.00121 * 175.13742 * 5 4 3 7 7 C 1.50700 * 119.99950 * 355.13810 * 5 4 3 8 8 C 1.53001 * 109.47230 * 179.97438 * 7 5 4 9 9 N 1.46498 * 109.47185 * 180.02562 * 8 7 5 10 10 C 1.35313 * 125.87053 * 125.00068 * 9 8 7 11 11 C 1.35353 * 106.17680 * 180.02562 * 10 9 8 12 12 N 1.33780 * 106.49398 * 359.97438 * 11 10 9 13 13 N 1.28626 * 108.88604 * 0.02562 * 12 11 10 14 14 C 1.46497 * 120.00429 * 264.65166 * 4 3 2 15 15 H 1.08996 * 110.88694 * 180.60555 * 14 4 3 16 16 C 1.55165 * 111.00283 * 56.73147 * 14 4 3 17 17 C 1.54324 * 102.93998 * 277.42625 * 16 14 4 18 18 N 1.47030 * 107.27307 * 337.80842 * 17 16 14 19 19 C 1.36935 * 125.65057 * 178.97395 * 18 17 16 20 20 H 1.07996 * 119.99732 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99784 * 359.97438 * 19 18 17 22 22 N 1.31624 * 120.00426 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46811 * 89.99885 * 23 21 19 25 25 H 1.48496 * 109.47695 * 209.99886 * 23 21 19 26 26 H 1.48498 * 109.46953 * 330.00369 * 23 21 19 27 27 C 1.47525 * 108.71364 * 358.94466 * 18 17 16 28 28 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46957 * 299.99259 * 1 2 3 30 30 H 1.08992 * 109.47161 * 59.99934 * 1 2 3 31 31 H 1.08997 * 109.46957 * 240.00741 * 2 1 3 32 32 H 1.08992 * 109.47161 * 120.00066 * 2 1 3 33 33 H 1.09003 * 109.47080 * 61.15836 * 3 2 1 34 34 H 1.08997 * 109.47660 * 301.16169 * 3 2 1 35 35 H 1.09000 * 109.47250 * 59.99722 * 7 5 4 36 36 H 1.09007 * 109.47129 * 299.99882 * 7 5 4 37 37 H 1.09001 * 109.46973 * 60.00197 * 8 7 5 38 38 H 1.08997 * 109.46933 * 299.99885 * 8 7 5 39 39 H 1.07995 * 126.91402 * 359.97417 * 10 9 8 40 40 H 1.07999 * 126.75517 * 179.97438 * 11 10 9 41 41 H 1.08994 * 110.72299 * 35.78975 * 16 14 4 42 42 H 1.08998 * 110.71456 * 159.06672 * 16 14 4 43 43 H 1.08997 * 109.88281 * 97.22564 * 17 16 14 44 44 H 1.08999 * 109.88676 * 218.39174 * 17 16 14 45 45 H 0.96992 * 120.00417 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36901 * 265.30777 * 27 18 17 47 47 H 1.08994 * 110.41489 * 142.95376 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4428 -0.0278 5 6 4.1564 1.3418 -1.2033 6 8 5.3655 1.4305 -1.2359 7 6 3.3826 1.1186 -2.4770 8 6 4.3536 1.0422 -3.6569 9 7 3.6013 0.8259 -4.8953 10 6 3.6634 1.5967 -6.0057 11 6 2.8134 1.0395 -6.8995 12 7 2.2803 -0.0312 -6.3003 13 7 2.7675 -0.1300 -5.1139 14 6 4.2611 1.5527 1.2219 15 1 5.3338 1.5487 1.0286 16 6 3.8700 0.4221 2.2100 17 6 2.5872 0.9691 2.8708 18 7 2.6048 2.4310 2.7145 19 6 1.6320 3.2918 3.1479 20 1 1.7390 4.3539 2.9844 21 6 0.5085 2.7991 3.7974 22 7 0.3779 1.5046 3.9962 23 14 -0.8182 3.9734 4.3894 24 1 -1.8270 4.1620 3.3161 25 1 -1.4771 3.4090 5.5945 26 1 -0.2050 5.2828 4.7279 27 6 3.8443 2.8171 2.0139 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6937 1.9503 0.9002 34 1 1.6598 1.9624 -0.8793 35 1 2.6891 1.9455 -2.6305 36 1 2.8245 0.1851 -2.4043 37 1 5.0473 0.2155 -3.5037 38 1 4.9113 1.9759 -3.7295 39 1 4.2687 2.4794 -6.1495 40 1 2.6063 1.3902 -7.8998 41 1 3.6629 -0.5041 1.6739 42 1 4.6528 0.2718 2.9534 43 1 1.7092 0.5539 2.3759 44 1 2.5758 0.7097 3.9294 45 1 -0.4070 1.1604 4.4503 46 1 4.6181 3.0867 2.7326 47 1 3.6533 3.6458 1.3322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691849411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:57 Heat of formation + Delta-G solvation = 97.799795 kcal Electronic energy + Delta-G solvation = -28484.557141 eV Core-core repulsion = 24706.007789 eV Total energy + Delta-G solvation = -3778.549352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.39429 -40.23065 -37.84000 -35.40822 -35.00936 -32.99049 -31.88374 -31.25815 -30.99234 -29.33665 -27.63061 -25.90061 -25.41311 -24.27405 -22.85385 -21.87316 -21.29909 -20.52642 -20.14169 -18.65573 -18.03765 -17.09860 -16.76844 -16.63108 -15.76812 -15.62525 -15.08613 -14.78095 -14.54840 -14.31158 -13.99177 -13.85247 -13.57288 -13.27040 -12.76844 -12.73074 -12.42527 -12.06897 -11.99910 -11.92520 -11.62809 -11.55437 -11.31565 -11.11937 -11.06182 -11.01884 -10.93186 -10.61250 -10.36869 -10.34703 -10.20743 -10.12579 -9.97463 -9.73677 -9.58647 -9.50377 -8.73990 -8.31586 -6.90321 -5.81949 -3.16593 1.42328 2.09766 2.42442 2.66477 3.23584 3.32673 3.39499 3.40518 4.15691 4.34731 4.40455 4.44488 4.60028 4.83072 4.96470 5.02943 5.20433 5.25694 5.29976 5.37426 5.39767 5.49343 5.51261 5.60003 5.64565 5.71011 5.81723 5.90123 5.97311 6.10128 6.16155 6.25415 6.31806 6.36352 6.41737 6.45534 6.53556 6.65003 6.69007 6.77329 7.03152 7.47071 7.52468 7.70228 7.74480 8.13734 8.26501 8.34906 9.10930 9.70035 10.35066 11.28376 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.003401 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.989770 B = 8231.319116 C = 8886.563622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.083 3.917 4 N -0.578 5.578 5 C 0.519 3.481 6 O -0.559 6.559 7 C -0.155 4.155 8 C 0.132 3.868 9 N -0.289 5.289 10 C -0.049 4.049 11 C -0.056 4.056 12 N -0.275 5.275 13 N -0.083 5.083 14 C 0.122 3.878 15 H 0.100 0.900 16 C -0.158 4.158 17 C 0.166 3.834 18 N -0.602 5.602 19 C -0.234 4.234 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.916 5.916 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.125 3.875 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.190 0.810 40 H 0.189 0.811 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.253 0.747 46 H 0.031 0.969 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 -0.539 -14.971 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.040 4.040 4 N -0.307 5.307 5 C 0.306 3.694 6 O -0.439 6.439 7 C -0.196 4.196 8 C 0.011 3.989 9 N -0.082 5.082 10 C -0.200 4.200 11 C -0.213 4.213 12 N -0.140 5.140 13 N -0.063 5.063 14 C 0.018 3.982 15 H 0.118 0.882 16 C -0.197 4.197 17 C 0.042 3.958 18 N -0.329 5.329 19 C -0.362 4.362 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.563 5.563 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.207 0.793 40 H 0.206 0.794 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.040 -1.752 -14.223 15.551 hybrid contribution -0.234 1.648 0.019 1.664 sum 5.807 -0.104 -14.203 15.345 Atomic orbital electron populations 1.21653 0.95085 1.01388 1.02372 1.22034 0.96621 0.97140 1.01828 1.22312 0.77771 0.97650 1.06248 1.47812 1.07673 1.69808 1.05420 1.20094 0.87637 0.76742 0.84926 1.90671 1.14087 1.52202 1.86935 1.21968 0.99214 1.06372 0.92031 1.21891 0.92762 1.05841 0.78454 1.47610 1.29178 1.18319 1.13139 1.23738 1.06400 1.01867 0.88012 1.23632 0.99551 0.95925 1.02210 1.75134 1.21068 1.17774 1.00060 1.78323 1.04837 1.10366 1.12751 1.22283 0.95811 0.97287 0.82784 0.88210 1.23310 1.00999 0.97471 0.97956 1.21411 0.92493 0.83242 0.98635 1.44624 1.18517 1.02760 1.66980 1.19014 0.96603 0.89086 1.31501 0.90515 1.24758 0.98393 0.96081 1.00656 1.69950 1.29127 1.10417 1.46812 0.86182 0.81876 0.79887 0.78174 1.21558 1.21683 1.20789 1.21920 0.90250 0.94335 0.93722 0.93126 0.90957 0.93594 0.93402 0.90483 0.84079 0.92343 0.88159 0.86857 0.87304 0.86738 0.79276 0.79440 0.91670 0.91401 0.91906 0.94070 0.93658 0.95111 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.09 5.30 -26.73 -0.14 -2.23 16 3 C 0.08 1.33 4.16 -4.04 -0.02 1.31 16 4 N -0.58 -9.07 2.53 -163.67 -0.41 -9.49 16 5 C 0.52 7.45 7.63 -10.99 -0.08 7.37 16 6 O -0.56 -9.18 15.37 5.56 0.09 -9.09 16 7 C -0.16 -1.74 4.49 -27.88 -0.13 -1.87 16 8 C 0.13 1.26 5.75 -4.04 -0.02 1.24 16 9 N -0.29 -3.07 3.44 -61.26 -0.21 -3.28 16 10 C -0.05 -0.41 11.57 -17.05 -0.20 -0.61 16 11 C -0.06 -0.54 12.06 -17.73 -0.21 -0.75 16 12 N -0.27 -3.71 12.41 30.24 0.38 -3.34 16 13 N -0.08 -1.12 12.91 60.35 0.78 -0.34 16 14 C 0.12 2.09 3.66 -65.78 -0.24 1.85 16 15 H 0.10 1.68 7.02 -51.93 -0.36 1.31 16 16 C -0.16 -2.77 5.99 -24.89 -0.15 -2.92 16 17 C 0.17 3.61 4.16 -3.06 -0.01 3.60 16 18 N -0.60 -13.69 1.91 -169.99 -0.32 -14.02 16 19 C -0.23 -5.93 9.90 -15.06 -0.15 -6.08 16 20 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 21 C 0.00 -0.05 5.49 -17.43 -0.10 -0.15 16 22 N -0.92 -24.45 10.31 55.49 0.57 -23.87 16 23 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.12 2.41 6.54 -2.47 -0.02 2.39 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 6.32 -51.93 -0.33 0.32 16 32 H 0.08 1.29 4.71 -51.93 -0.24 1.04 16 33 H 0.14 2.84 4.32 -51.93 -0.22 2.62 16 34 H 0.06 0.84 6.71 -51.93 -0.35 0.50 16 35 H 0.10 1.07 7.29 -51.93 -0.38 0.69 16 36 H 0.11 1.32 6.33 -51.93 -0.33 0.99 16 37 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.11 0.90 8.02 -51.93 -0.42 0.48 16 39 H 0.19 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.06 1.08 6.78 -51.93 -0.35 0.73 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.43 4.44 -51.93 -0.23 1.20 16 44 H 0.04 1.03 7.51 -51.93 -0.39 0.64 16 45 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -29.97 365.01 -6.71 -36.68 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.95 Total: 4.18 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.10 Total: 1.29 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.78 Total: -54.34 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.97 -6.71 -36.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691849411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.484 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds