Wall clock time and date at job start Fri Apr 10 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48497 * 109.46810 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47229 * 120.00469 * 3 2 1 7 7 C 1.38809 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99795 * 179.97438 * 9 7 2 11 11 C 1.53122 * 109.52171 * 204.99958 * 10 9 7 12 12 C 1.53033 * 109.27792 * 182.38216 * 11 10 9 13 13 N 1.46839 * 109.52993 * 59.17734 * 12 11 10 14 14 C 1.46899 * 111.00364 * 174.16376 * 13 12 11 15 15 C 1.53002 * 109.47205 * 169.99904 * 14 13 12 16 16 N 1.46497 * 109.47199 * 179.97438 * 15 14 13 17 17 C 1.34780 * 120.00233 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99800 * 0.02562 * 17 16 15 19 19 C 1.50690 * 119.99940 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47169 * 180.02562 * 19 17 16 21 21 C 1.36890 * 126.39537 * 270.03160 * 20 19 17 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 C 1.46859 * 111.19623 * 298.26096 * 13 12 11 26 26 C 1.53035 * 109.52455 * 61.73828 * 25 13 12 27 27 H 0.97003 * 119.99759 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00127 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.52363 * 325.12327 * 10 9 7 30 30 H 1.08998 * 109.50370 * 62.43632 * 11 10 9 31 31 H 1.09001 * 109.50215 * 302.31692 * 11 10 9 32 32 H 1.09008 * 109.46120 * 299.15419 * 12 11 10 33 33 H 1.09006 * 109.45381 * 179.18832 * 12 11 10 34 34 H 1.08990 * 109.47196 * 49.99993 * 14 13 12 35 35 H 1.08994 * 109.46790 * 289.99433 * 14 13 12 36 36 H 1.09006 * 109.47212 * 59.99750 * 15 14 13 37 37 H 1.09002 * 109.47266 * 299.99978 * 15 14 13 38 38 H 0.97006 * 119.99878 * 359.97438 * 16 15 14 39 39 H 1.09002 * 109.47377 * 60.00594 * 19 17 16 40 40 H 1.08998 * 109.47638 * 299.99878 * 19 17 16 41 41 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 42 42 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 43 43 H 1.08006 * 125.64571 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.46262 * 181.75551 * 25 13 12 45 45 H 1.08999 * 109.45989 * 301.72392 * 25 13 12 46 46 H 1.08994 * 109.50392 * 180.88263 * 26 25 13 47 47 H 1.08999 * 109.50130 * 60.75856 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.1811 -4.7539 -0.6094 12 6 1.9285 -6.0881 -0.5524 13 7 2.2487 -6.4121 0.8436 14 6 2.8436 -7.7511 0.9502 15 6 3.3893 -7.9555 2.3648 16 7 3.9820 -9.2910 2.4713 17 6 4.5297 -9.6945 3.6348 18 8 4.5316 -8.9520 4.5938 19 6 5.1399 -11.0680 3.7441 20 7 5.6624 -11.2639 5.0987 21 6 6.9255 -10.9646 5.5332 22 6 6.9792 -11.3008 6.8362 23 7 5.7816 -11.7924 7.1875 24 6 4.9882 -11.7742 6.1517 25 6 3.1288 -5.3966 1.4359 26 6 2.4172 -4.0417 1.4384 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3881 0.0005 29 1 2.9699 -3.5509 -0.5869 30 1 0.9573 -4.5061 -1.6470 31 1 0.2520 -4.8330 -0.0449 32 1 2.8507 -6.0127 -1.1286 33 1 1.3009 -6.8740 -0.9728 34 1 3.6562 -7.8460 0.2301 35 1 2.0834 -8.5039 0.7417 36 1 2.5766 -7.8606 3.0851 37 1 4.1494 -7.2026 2.5734 38 1 3.9802 -9.8850 1.7044 39 1 5.9524 -11.1631 3.0237 40 1 4.3797 -11.8209 3.5360 41 1 7.7253 -10.5405 4.9443 42 1 7.8351 -11.1901 7.4855 43 1 3.9620 -12.1108 6.1388 44 1 3.3732 -5.6803 2.4596 45 1 4.0454 -5.3243 0.8505 46 1 3.0765 -3.2852 1.8637 47 1 1.5075 -4.1096 2.0350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699996388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:17 Heat of formation + Delta-G solvation = 53.402552 kcal Electronic energy + Delta-G solvation = -26180.512815 eV Core-core repulsion = 22400.038254 eV Total energy + Delta-G solvation = -3780.474561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39254 -40.13186 -38.95275 -35.99491 -34.56875 -34.37041 -32.37419 -30.70865 -30.14852 -29.76319 -28.75720 -27.12089 -24.44458 -23.36909 -22.37093 -21.72537 -21.66125 -21.18090 -20.84599 -19.36190 -18.11738 -17.86927 -17.08221 -16.49408 -16.26222 -15.44215 -15.23040 -15.19933 -14.65870 -14.52868 -14.41821 -14.17682 -13.92493 -13.75133 -13.55462 -13.51943 -13.35289 -13.02367 -12.82194 -12.48202 -11.97453 -11.69694 -11.63220 -11.21280 -10.87269 -10.82271 -10.80260 -10.59718 -10.29264 -10.27581 -10.22227 -9.87229 -9.75320 -9.61043 -9.54315 -8.86699 -8.79793 -8.32115 -6.94839 -5.75973 -3.04652 1.60800 1.99520 2.19902 2.71976 2.94194 3.43684 3.48220 3.49178 3.87936 4.04429 4.11852 4.33047 4.42273 4.47720 4.53674 4.58648 4.75397 5.11451 5.13223 5.14207 5.27694 5.37177 5.38175 5.51355 5.55271 5.60151 5.63575 5.68286 5.82701 5.86648 5.88241 6.00431 6.10144 6.24133 6.41797 6.45047 6.47846 6.62719 6.73537 6.84994 6.90894 7.04525 7.17141 7.19745 7.61652 7.69163 7.77983 8.42767 9.53674 10.12141 10.46994 11.46593 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.001894 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.993984 B =14783.436946 C =15626.218846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.122 4.122 12 C 0.065 3.935 13 N -0.531 5.531 14 C 0.046 3.954 15 C 0.114 3.886 16 N -0.724 5.724 17 C 0.492 3.508 18 O -0.515 6.515 19 C 0.088 3.912 20 N -0.448 5.448 21 C -0.047 4.047 22 C -0.028 4.028 23 N -0.494 5.494 24 C 0.193 3.807 25 C 0.050 3.950 26 C -0.132 4.132 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.401 0.599 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.203 0.797 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -28.042 2.016 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.064 4.064 13 N -0.257 5.257 14 C -0.082 4.082 15 C -0.009 4.009 16 N -0.378 5.378 17 C 0.275 3.725 18 O -0.389 6.389 19 C -0.039 4.039 20 N -0.132 5.132 21 C -0.179 4.179 22 C -0.175 4.175 23 N -0.211 5.211 24 C -0.089 4.089 25 C -0.078 4.078 26 C -0.173 4.173 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.190 0.810 42 H 0.187 0.813 43 H 0.220 0.780 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.938 -27.564 3.628 29.524 hybrid contribution 1.100 1.077 -1.717 2.306 sum 11.038 -26.486 1.911 28.758 Atomic orbital electron populations 1.69654 1.05077 1.25728 1.57648 1.24741 0.95517 0.97657 1.03081 0.86283 0.78532 0.83658 0.77804 1.21349 1.21689 1.21285 1.19187 0.90890 0.84200 1.42738 0.91372 1.42407 1.05786 0.99694 1.88536 1.20231 0.94146 0.86150 0.92731 1.21864 0.99657 0.93128 1.01364 1.22060 0.98860 0.98268 0.87169 1.61997 1.44311 1.00597 1.18801 1.22211 0.98085 0.93165 0.94778 1.21621 0.98651 0.82721 0.97948 1.45875 1.60336 1.18123 1.13466 1.20736 0.79262 0.89100 0.83367 1.90845 1.56154 1.54954 1.36907 1.21658 1.02019 0.96469 0.83783 1.44998 1.11209 1.47391 1.09554 1.22687 0.88242 1.09077 0.97922 1.22282 0.96864 1.04758 0.93606 1.70297 1.02660 1.20702 1.27480 1.24980 0.99719 1.02233 0.81997 1.22319 0.93770 0.92944 0.98791 1.22321 1.00556 0.93231 1.01214 0.93482 0.78227 0.94122 0.91420 0.91229 0.95023 0.91186 0.94484 0.90223 0.90098 0.90616 0.76470 0.85967 0.85695 0.81023 0.81304 0.78045 0.90937 0.95268 0.91676 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -18.09 5.13 -53.30 -0.27 -18.37 16 10 C 0.18 3.48 2.84 -67.80 -0.19 3.28 16 11 C -0.12 -1.95 5.57 -26.65 -0.15 -2.10 16 12 C 0.06 0.81 5.42 -3.84 -0.02 0.79 16 13 N -0.53 -6.52 4.81 -234.67 -1.13 -7.65 16 14 C 0.05 0.39 5.39 -3.82 -0.02 0.37 16 15 C 0.11 1.01 4.92 -4.04 -0.02 0.99 16 16 N -0.72 -4.22 5.56 -60.29 -0.33 -4.55 16 17 C 0.49 3.81 7.90 -10.99 -0.09 3.72 16 18 O -0.51 -6.95 16.43 5.56 0.09 -6.85 16 19 C 0.09 0.34 6.63 -5.20 -0.03 0.30 16 20 N -0.45 -3.44 2.24 -119.87 -0.27 -3.71 16 21 C -0.05 -0.39 11.58 -16.56 -0.19 -0.59 16 22 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 23 N -0.49 -5.84 11.25 -14.66 -0.16 -6.00 16 24 C 0.19 1.77 12.56 -90.38 -1.14 0.63 16 25 C 0.05 0.69 4.85 -3.83 -0.02 0.67 16 26 C -0.13 -2.37 5.68 -26.65 -0.15 -2.52 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 29 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 38 H 0.40 0.87 8.47 -40.82 -0.35 0.52 16 39 H 0.12 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.20 1.18 8.06 -52.48 -0.42 0.75 16 44 H 0.07 0.95 5.81 -51.93 -0.30 0.65 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -37.11 384.29 -10.66 -47.76 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.59 Total: 5.87 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.48 Total: -2.22 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.44 Total: -67.79 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.09 Total: -6.85 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.11 -10.66 -47.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699996388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.163 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds