Wall clock time and date at job start Fri Apr 10 2020 18:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48497 * 109.46810 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47229 * 120.00469 * 3 2 1 7 7 C 1.38809 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99795 * 179.97438 * 9 7 2 11 11 C 1.53122 * 109.52171 * 204.99958 * 10 9 7 12 12 C 1.53033 * 109.27792 * 182.38216 * 11 10 9 13 13 N 1.46839 * 109.52993 * 59.17734 * 12 11 10 14 14 C 1.46899 * 111.00364 * 174.16376 * 13 12 11 15 15 C 1.53002 * 109.47205 * 169.99904 * 14 13 12 16 16 N 1.46497 * 109.47199 * 179.97438 * 15 14 13 17 17 C 1.34780 * 120.00233 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99800 * 0.02562 * 17 16 15 19 19 C 1.50690 * 119.99940 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47169 * 180.02562 * 19 17 16 21 21 C 1.36890 * 126.39537 * 270.03160 * 20 19 17 22 22 C 1.34669 * 106.81617 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.02026 * 0.02562 * 22 21 20 24 24 C 1.30493 * 109.25480 * 0.02562 * 23 22 21 25 25 C 1.46859 * 111.19623 * 298.26096 * 13 12 11 26 26 C 1.53035 * 109.52455 * 61.73828 * 25 13 12 27 27 H 0.97003 * 119.99759 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00127 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.52363 * 325.12327 * 10 9 7 30 30 H 1.08998 * 109.50370 * 62.43632 * 11 10 9 31 31 H 1.09001 * 109.50215 * 302.31692 * 11 10 9 32 32 H 1.09008 * 109.46120 * 299.15419 * 12 11 10 33 33 H 1.09006 * 109.45381 * 179.18832 * 12 11 10 34 34 H 1.08990 * 109.47196 * 49.99993 * 14 13 12 35 35 H 1.08994 * 109.46790 * 289.99433 * 14 13 12 36 36 H 1.09006 * 109.47212 * 59.99750 * 15 14 13 37 37 H 1.09002 * 109.47266 * 299.99978 * 15 14 13 38 38 H 0.97006 * 119.99878 * 359.97438 * 16 15 14 39 39 H 1.09002 * 109.47377 * 60.00594 * 19 17 16 40 40 H 1.08998 * 109.47638 * 299.99878 * 19 17 16 41 41 H 1.07996 * 126.59258 * 359.97438 * 21 20 19 42 42 H 1.08002 * 125.99042 * 180.26007 * 22 21 20 43 43 H 1.08006 * 125.64571 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.46262 * 181.75551 * 25 13 12 45 45 H 1.08999 * 109.45989 * 301.72392 * 25 13 12 46 46 H 1.08994 * 109.50392 * 180.88263 * 26 25 13 47 47 H 1.08999 * 109.50130 * 60.75856 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.1811 -4.7539 -0.6094 12 6 1.9285 -6.0881 -0.5524 13 7 2.2487 -6.4121 0.8436 14 6 2.8436 -7.7511 0.9502 15 6 3.3893 -7.9555 2.3648 16 7 3.9820 -9.2910 2.4713 17 6 4.5297 -9.6945 3.6348 18 8 4.5316 -8.9520 4.5938 19 6 5.1399 -11.0680 3.7441 20 7 5.6624 -11.2639 5.0987 21 6 6.9255 -10.9646 5.5332 22 6 6.9792 -11.3008 6.8362 23 7 5.7816 -11.7924 7.1875 24 6 4.9882 -11.7742 6.1517 25 6 3.1288 -5.3966 1.4359 26 6 2.4172 -4.0417 1.4384 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3881 0.0005 29 1 2.9699 -3.5509 -0.5869 30 1 0.9573 -4.5061 -1.6470 31 1 0.2520 -4.8330 -0.0449 32 1 2.8507 -6.0127 -1.1286 33 1 1.3009 -6.8740 -0.9728 34 1 3.6562 -7.8460 0.2301 35 1 2.0834 -8.5039 0.7417 36 1 2.5766 -7.8606 3.0851 37 1 4.1494 -7.2026 2.5734 38 1 3.9802 -9.8850 1.7044 39 1 5.9524 -11.1631 3.0237 40 1 4.3797 -11.8209 3.5360 41 1 7.7253 -10.5405 4.9443 42 1 7.8351 -11.1901 7.4855 43 1 3.9620 -12.1108 6.1388 44 1 3.3732 -5.6803 2.4596 45 1 4.0454 -5.3243 0.8505 46 1 3.0765 -3.2852 1.8637 47 1 1.5075 -4.1096 2.0350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699996388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:16 Heat of formation + Delta-G solvation = 25.621205 kcal Electronic energy + Delta-G solvation = -26181.717504 eV Core-core repulsion = 22400.038254 eV Total energy + Delta-G solvation = -3781.679251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.98123 -40.82601 -40.04525 -37.17012 -35.79331 -34.94932 -34.01779 -31.94748 -31.54570 -30.45690 -29.73920 -27.94569 -26.04721 -24.68863 -23.56215 -22.53538 -22.28697 -22.14438 -21.46924 -20.75080 -19.10786 -18.69804 -18.39147 -17.39391 -16.89264 -16.72602 -16.16630 -15.96843 -15.87500 -15.52443 -15.34078 -15.28788 -15.08480 -14.83085 -14.58565 -14.53186 -14.17913 -14.07164 -13.99413 -13.25774 -13.13050 -13.01108 -12.86031 -12.67655 -12.50615 -12.23522 -12.22190 -12.05506 -11.77294 -11.55934 -11.48371 -11.17807 -10.97212 -10.85349 -10.49933 -10.20371 -9.42835 -9.25907 -9.00337 -7.94927 -5.23280 1.01802 1.45009 1.45454 1.48018 1.54088 1.72833 2.17981 2.26899 2.54938 3.01934 3.37501 3.65225 3.75993 3.81221 3.84230 3.88623 4.00148 4.03942 4.07674 4.18898 4.20339 4.32243 4.35670 4.49116 4.54597 4.58718 4.68921 4.74123 4.77930 4.86015 4.92788 4.95975 4.96983 5.11092 5.17688 5.27613 5.31721 5.43277 5.48199 5.59570 5.81676 6.08615 6.16702 6.20453 6.27696 6.47228 7.13291 7.15314 7.32886 8.10438 8.33360 9.28347 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.001894 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.993984 B =14783.436946 C =15626.218846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.114 4.114 12 C 0.073 3.927 13 N -0.546 5.546 14 C 0.054 3.946 15 C 0.120 3.880 16 N -0.705 5.705 17 C 0.491 3.509 18 O -0.581 6.581 19 C 0.092 3.908 20 N -0.448 5.448 21 C -0.044 4.044 22 C -0.063 4.063 23 N -0.541 5.541 24 C 0.183 3.817 25 C 0.064 3.936 26 C -0.125 4.125 27 H 0.250 0.750 28 H 0.372 0.628 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.424 0.576 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.198 0.802 42 H 0.177 0.823 43 H 0.227 0.773 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.042 0.958 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.802 -30.610 0.055 32.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.153 4.153 12 C -0.055 4.055 13 N -0.272 5.272 14 C -0.074 4.074 15 C -0.004 4.004 16 N -0.359 5.359 17 C 0.277 3.723 18 O -0.460 6.460 19 C -0.033 4.033 20 N -0.131 5.131 21 C -0.177 4.177 22 C -0.209 4.209 23 N -0.260 5.260 24 C -0.100 4.100 25 C -0.065 4.065 26 C -0.165 4.165 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.262 0.738 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.215 0.785 42 H 0.194 0.806 43 H 0.244 0.756 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.256 -30.211 1.606 32.280 hybrid contribution 0.702 1.810 -1.121 2.242 sum 11.959 -28.401 0.485 30.820 Atomic orbital electron populations 1.69815 1.06552 1.26024 1.59641 1.25556 0.96401 1.01051 1.03994 0.85240 0.77221 0.79361 0.78129 1.20264 1.22158 1.20668 1.19565 0.91271 0.85402 1.40888 0.90962 1.42645 1.05410 1.01038 1.88642 1.20496 0.94156 0.85252 0.93824 1.21753 0.98905 0.94139 1.00482 1.21993 0.99301 0.96665 0.87533 1.61907 1.44707 1.01872 1.18687 1.22240 0.99367 0.91137 0.94606 1.21336 0.97391 0.83906 0.97794 1.45639 1.59045 1.17233 1.13984 1.21450 0.78279 0.90011 0.82583 1.90834 1.58829 1.57122 1.39179 1.22039 1.04214 0.94588 0.82505 1.45194 1.10760 1.46396 1.10733 1.23115 0.89174 1.07811 0.97613 1.22629 0.97057 1.06138 0.95035 1.70223 1.03865 1.22442 1.29468 1.25484 1.00501 1.01939 0.82045 1.22080 0.93574 0.91115 0.99721 1.22113 0.99617 0.95470 0.99316 0.94085 0.79669 0.94606 0.91671 0.92432 0.94006 0.88149 0.92329 0.87776 0.92501 0.92651 0.73779 0.82151 0.81595 0.78460 0.80609 0.75639 0.90368 0.94491 0.93962 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -13.49 9.93 84.03 0.83 -12.66 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -37.86 5.13 -322.55 -1.65 -39.52 16 10 C 0.17 6.74 2.84 45.07 0.13 6.87 16 11 C -0.11 -3.57 5.57 30.65 0.17 -3.40 16 12 C 0.07 1.59 5.42 86.33 0.47 2.06 16 13 N -0.55 -11.95 4.81 -896.37 -4.31 -16.26 16 14 C 0.05 0.70 5.39 86.30 0.46 1.16 16 15 C 0.12 1.86 4.92 86.38 0.43 2.28 16 16 N -0.70 -5.69 5.56 -463.06 -2.57 -8.26 16 17 C 0.49 6.28 7.90 87.65 0.69 6.97 16 18 O -0.58 -15.32 16.43 -3.04 -0.05 -15.37 16 19 C 0.09 0.32 6.63 85.63 0.57 0.89 16 20 N -0.45 -5.88 2.24 -533.16 -1.19 -7.08 16 21 C -0.04 -0.68 11.58 83.08 0.96 0.29 16 22 C -0.06 -1.27 11.87 83.52 0.99 -0.27 16 23 N -0.54 -12.96 11.25 -200.31 -2.25 -15.21 16 24 C 0.18 3.16 12.56 180.27 2.26 5.42 16 25 C 0.06 1.68 4.85 86.32 0.42 2.10 16 26 C -0.12 -4.53 5.68 30.65 0.17 -4.36 16 27 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.37 20.56 7.80 -92.71 -0.72 19.83 16 29 H 0.04 1.44 8.08 -2.39 -0.02 1.43 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 1.66 8.12 -2.38 -0.02 1.64 16 34 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.10 6.21 -2.39 -0.01 1.09 16 38 H 0.42 -0.37 8.47 -92.70 -0.79 -1.15 16 39 H 0.16 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.17 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.23 2.29 8.06 -2.91 -0.02 2.26 16 44 H 0.08 2.01 5.81 -2.39 -0.01 2.00 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -86.00 384.29 -1.23 -87.22 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.53 Total: 22.31 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 9.03 Total: 3.28 kcal Atomic # 7 Polarization: -134.55 SS G_CDS: -11.70 Total: -146.25 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.37 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -86.00 -1.23 -87.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699996388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.843 kcal (2) G-P(sol) polarization free energy of solvation -85.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds